IVF0002372 (gene) Melon (IVF77) v1

Overview


Name	IVF0002372
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Collagen triple helix repeat protein
Location	chr02: 17901178 .. 17901336 (+)
RNA-Seq Expression	IVF0002372
Synteny	IVF0002372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGACGAAGAGGAAGAGTCAGACAAAAACTATGGATCCGACGAAGAGGAACAATCAGGCAAAAACTATGGATCCGACGAAGAAGAACAGTCTAGCAAAGAGGAAAAGTCCGGGTTGTAGAGGAAGACGGTGTGCAAAGGAAGATGATGAGTGA

mRNA sequence

ATGGATCCGACGAAGAGGAAGAGTCAGACAAAAACTATGGATCCGACGAAGAGGAACAATCAGGCAAAAACTATGGATCCGACGAAGAAGAACAGTCTAGCAAAGAGGAAAAGTCCGGGTTGTAGAGGAAGACGGTGTGCAAAGGAAGATGATGAGTGA

Coding sequence (CDS)

ATGGATCCGACGAAGAGGAAGAGTCAGACAAAAACTATGGATCCGACGAAGAGGAACAATCAGGCAAAAACTATGGATCCGACGAAGAAGAACAGTCTAGCAAAGAGGAAAAGTCCGGGTTGTAGAGGAAGACGGTGTGCAAAGGAAGATGATGAGTGA

Protein sequence

MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE

Homology

[Close]

BLAST of IVF0002372 vs. ExPASy TrEMBL
Match: A0A5A7UXT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00860 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKS--------PGCRGRR 46
          MDP KRKSQTKTMDPTKRNNQAKTMDPTK+NSL KR S        P CRGRR
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCRGRR 53

[Close]

BLAST of IVF0002372 vs. ExPASy TrEMBL
Match: A0A5A7UD84 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001290 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-09
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MDPTKRKSQTKTMDPTKRNNQAKTMD------PTKKNSLAKRKSPGCRGRR 46
          MDP KRK QTKTMDPTKRNN+AKTM+      PTK+N+ AKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0002372 vs. ExPASy TrEMBL
Match: A0A5D3DFL7 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001450 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-09
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MDPTKRKSQTKTMDPTKRNNQAKTMD------PTKKNSLAKRKSPGCRGRR 46
          MDP KRK QTKTMDPTKRNN+AKTM+      PTK+N+ AKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0002372 vs. ExPASy TrEMBL
Match: A0A5D3BQB8 (Putative transposable element-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001450 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-05
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 13 MDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE 53
          MDPTKRNNQAKTMDPTK+NSL KRKS GCR      EDDE
Sbjct: 1  MDPTKRNNQAKTMDPTKRNSLVKRKSLGCR------EDDE 34

[Close]

BLAST of IVF0002372 vs. NCBI nr
Match: KAA0060038.1 (hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.37e-14
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKSP--------GCRGRR 45
          MDP KRKSQTKTMDPTKRNNQAKTMDPTK+NSL KR SP         CRGRR
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCRGRR 53

[Close]

BLAST of IVF0002372 vs. NCBI nr
Match: KAA0051389.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.08e-13
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKK------NSLAKRKSPGCRGRR 45
          MDP KRK QTKTMDPTKRNN+AKTM+PTK+      N+ AKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0002372 vs. NCBI nr
Match: TYK22248.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.08e-13
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSL------AKRKSPGCRGRR 45
          MDP KRK QTKTMDPTKRNN+AKTM+PTK+N+       AKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0002372 vs. NCBI nr
Match: TYK01567.1 (putative transposable element-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 4.78e-08
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 13 MDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE 52
          MDPTKRNNQAKTMDPTK+NSL KRKS GCR      EDDE
Sbjct: 1  MDPTKRNNQAKTMDPTKRNSLVKRKSLGCR------EDDE 34

[Close]

BLAST of IVF0002372 vs. NCBI nr
Match: KAA0039080.1 (reticulon-like protein B2 [Cucumis melo var. makuwa])

HSP 1 Score: 45.8 bits (107), Expect = 1.98e-04
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 11 KTMDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRR 45
          KTMDPTKRNNQA+TMDPTK      RKS GCR RR
Sbjct: 2  KTMDPTKRNNQARTMDPTK------RKSSGCRERR 30

The following BLAST results are available for this feature:

BLAST of IVF0002372 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXT0	1.8e-09	75.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UD84	9.0e-09	74.51	Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DFL7	9.0e-09	74.51	Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BQB8	6.1e-05	77.50	Putative transposable element-related protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0002372 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060038.1	1.37e-14	75.47	hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]	[more]
KAA0051389.1	1.08e-13	74.51	Collagen triple helix repeat protein [Cucumis melo var. makuwa]	[more]
TYK22248.1	1.08e-13	74.51	Collagen triple helix repeat protein [Cucumis melo var. makuwa]	[more]
TYK01567.1	4.78e-08	77.50	putative transposable element-related protein [Cucumis melo var. makuwa]	[more]
KAA0039080.1	1.98e-04	74.29	reticulon-like protein B2 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0002372 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002372.2	IVF0002372.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity