IVF0002353 (gene) Melon (IVF77) v1

Overview
NameIVF0002353
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhotosystem I assembly protein Ycf3
Locationtig00000662: 108416 .. 110420 (+)
RNA-Seq ExpressionIVF0002353
SyntenyIVF0002353
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGGGGAAAAAGAGGCATTCACCTATTACAGAGATGGTGCGATTTGATTTTTTTTTTTTTCAATTTTCTTTACCGCTCTCCGTCTTAGTAGAAAGACACAGTATTCGGGATAGAAAGAAAACAATAATTGAAATAAATCTACGCTTCTTGGAGGTGCAATTTGAAAATCAAAAAATTCCTTCTGTCGTGTATCCCCGATTAATGTAACCTTAGATGCTTTAATTGTCGATTCTAGTATTAAGCGAAAGGTGTAACCTATGGATTAAGTCAACCCTACTCCACTAGTAAAAATATTCACTAGTAAAAATAGGTAGCAGAGGGGAAGAAGCACTACACCTAGGAATCAACAACACGAAAACTTTGTTATAAATTATACCTTTTCCTTATCGGGATCGGAACTTAGAAAAATGGTTGGGACAACAAACATCCATCTCGTTTGTATTTTGGATACCTGTATAACCATCGAAGACTGTTGAAGTGACTAATTCCTGGAAATTTAGAGGCGTTGAGGACAAAGAAATTGTTAGAGTTACCATTTTTATTTTTATCTAGTAAACCATGCTTGATGTTAAGAAAAGATCTTTTACAGGAAGGTTGGCTAGAGATTTTTTGTAAAAACGCTAGTCCCATGAGTTCATAATGAGAGTATTTCAATGTTTTTTGATTTCATGTATTATTCTCATCTCATTATGCGCATCAGATAAAGGGGGAGCCGTATGAGATGAAAATCTCACGTACGGTTCTGGAACGGAGATTCTTTCAATGGAATAACGAACGACCGTAACGGATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGAAAATTCGCTAATAAATACTAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGCAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTTTTGGCCGATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCTCTTTTGCTTAACTCGAGAAAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGATAAATTTTTTTAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

mRNA sequence

ATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGGGGAAAAAGAGGCATTCACCTATTACAGAGATGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

Coding sequence (CDS)

ATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGGGGAAAAAGAGGCATTCACCTATTACAGAGATGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

Protein sequence

MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Homology
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BLAST of IVF0002353 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 2.8e-88
Identity = 162/177 (91.53%), Postives = 162/177 (91.53%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of IVF0002353 vs. ExPASy Swiss-Prot
Match: Q49KZ7 (Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.6e-83
Identity = 157/177 (88.70%), Postives = 159/177 (89.83%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-RINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of IVF0002353 vs. ExPASy Swiss-Prot
Match: A0ZZ36 (Photosystem I assembly protein Ycf3 OS=Gossypium barbadense OX=3634 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.6e-83
Identity = 157/177 (88.70%), Postives = 159/177 (89.83%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-QINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of IVF0002353 vs. ExPASy Swiss-Prot
Match: Q2L906 (Photosystem I assembly protein Ycf3 OS=Gossypium hirsutum OX=3635 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.6e-83
Identity = 157/177 (88.70%), Postives = 159/177 (89.83%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-QINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of IVF0002353 vs. ExPASy Swiss-Prot
Match: Q9MTP0 (Photosystem I assembly protein Ycf3 OS=Oenothera elata subsp. hookeri OX=85636 GN=ycf3 PE=3 SV=3)

HSP 1 Score: 310.1 bits (793), Expect = 1.6e-83
Identity = 157/177 (88.70%), Postives = 159/177 (89.83%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-RINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of IVF0002353 vs. ExPASy TrEMBL
Match: A0A6G8QRP2 (Photosystem I assembly protein Ycf3 OS=Rubus amabilis OX=616954 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87
Identity = 162/175 (92.57%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV-----NL 120
           DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY      NL
Sbjct: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRNL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
           P YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]
BLAST of IVF0002353 vs. ExPASy TrEMBL
Match: A0A7T7D536 (Hypothetical chloroplast RF34 OS=Rubus sachalinensis OX=59502 GN=ycf3 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87
Identity = 162/175 (92.57%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV-----NL 120
           DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY      NL
Sbjct: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRNL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
           P YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]
BLAST of IVF0002353 vs. ExPASy TrEMBL
Match: A0A218KG30 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 162/177 (91.53%), Postives = 162/177 (91.53%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of IVF0002353 vs. ExPASy TrEMBL
Match: G3ETY6 (Photosystem I assembly protein Ycf3 OS=Cucumis melo subsp. melo OX=412675 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 162/177 (91.53%), Postives = 162/177 (91.53%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of IVF0002353 vs. ExPASy TrEMBL
Match: A0A1S4EU10 (Photosystem I assembly protein Ycf3 OS=Cucumis melo OX=3656 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 162/177 (91.53%), Postives = 162/177 (91.53%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 171
                  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of IVF0002353 vs. NCBI nr
Match: KAG5222305.1 (photosystem assembly related protein [Salix suchowensis])

HSP 1 Score: 327 bits (839), Expect = 8.40e-113
Identity = 161/170 (94.71%), Postives = 164/170 (96.47%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           MPRS  I GN IDKTF+IVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MPRSR-ITGNLIDKTFTIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVNLPAYSD 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV+L AYSD
Sbjct: 61  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVHLLAYSD 120

Query: 121 RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 170
           RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 169

[Close]
BLAST of IVF0002353 vs. NCBI nr
Match: YP_009758243.1 (hypothetical chloroplast RF34 [Rubus amabilis] >YP_010142801.1 hypothetical chloroplast RF34 [Rubus sachalinensis] >QIN90022.1 hypothetical chloroplast RF34 [Rubus amabilis] >QQL03818.1 hypothetical chloroplast RF34 [Rubus sachalinensis])

HSP 1 Score: 327 bits (839), Expect = 1.00e-112
Identity = 162/175 (92.57%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RSG INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRSG-INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV-----NL 120
           DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY      NL
Sbjct: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRNL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 170
           P YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]
BLAST of IVF0002353 vs. NCBI nr
Match: YP_004841784.1 (hypothetical chloroplast RF34 [Cucumis melo subsp. melo] >YP_009004045.1 hypothetical chloroplast RF34 [Cucumis hystrix] >YP_009317387.1 photosystem I assembly protein Ycf3 [Coccinia grandis] >YP_009860074.1 photosystem I assembly protein Ycf3 [Cucumis melo subsp. agrestis] >YP_010131095.1 photosystem I assembly protein Ycf3 [Benincasa hispida] >YP_247600.1 photosystem I assembly protein Ycf3 [Cucumis sativus] >Q4VZH4.1 RecName: Full=Photosystem I assembly protein Ycf3 [Cucumis sativus] >ALF03302.1 photosystem I assembly protein Ycf3 [Cucumis sativus var. hardwickii] >AVE15332.1 Ycf3 [Cucumis sativus var. sativus] >QJF46384.1 photosystem I assembly protein Ycf3 [Cucumis melo] >QZL38682.1 photosystem I assembly factor Ycf3 [Citrullus ecirrhosus] >AAZ94652.1 ycf3 protein [Cucumis sativus])

HSP 1 Score: 322 bits (826), Expect = 8.07e-111
Identity = 162/177 (91.53%), Postives = 162/177 (91.53%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG-------NYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG       NYAEALQNYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 170
                  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of IVF0002353 vs. NCBI nr
Match: YP_009325990.1 (photosystem I assembly protein Ycf3 [Citrullus lanatus] >YP_009348032.1 photosystem I assembly protein Ycf3 [Citrullus mucosospermus] >YP_009420795.1 photosystem I assembly protein Ycf3 [Citrullus colocynthis] >YP_009431558.1 photosystem I assembly protein Ycf3 [Citrullus amarus] >YP_009431643.1 photosystem I assembly protein Ycf3 [Citrullus rehmii] >APW82462.1 photosystem I assembly protein Ycf3 [Citrullus lanatus subsp. vulgaris] >ASY96361.1 photosystem I assembly protein Ycf3 [Cucumis melo subsp. agrestis] >ASY96621.1 photosystem I assembly protein Ycf3 [Cucumis melo var. conomon] >ASY96709.1 photosystem I assembly protein Ycf3 [Cucumis melo var. makuwa] >ASY96796.1 photosystem I assembly protein Ycf3 [Cucumis melo var. momordica] >ASY96883.1 photosystem I assembly protein Ycf3 [Cucumis melo var. dudaim] >ASY96970.1 photosystem I assembly protein Ycf3 [Cucumis melo var. cantalupo] >ASY97144.1 photosystem I assembly protein Ycf3 [Cucumis melo var. inodorus] >ASY97318.1 photosystem I assembly protein Ycf3 [Cucumis melo var. flexuosus] >ASY97493.1 photosystem I assembly protein Ycf3 [Cucumis sativus var. hardwickii] >QDH07745.1 Ycf3 [Cucumis sativus] >QZL38594.1 photosystem I assembly factor Ycf3 [Citrullus naudinianus])

HSP 1 Score: 322 bits (825), Expect = 1.19e-110
Identity = 162/178 (91.01%), Postives = 162/178 (91.01%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG--------NYAEALQNY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG        NYAEALQNY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGGMSAQSEGNYAEALQNY 60

Query: 61  YEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 120
           YEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct: 61  YEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 120

Query: 121 VNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 170
                   RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 --------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 170

[Close]
BLAST of IVF0002353 vs. NCBI nr
Match: YP_009751907.1 (photosystem I assembly protein Ycf3 [Cyclanthera pedata] >YP_009752328.1 photosystem I assembly protein Ycf3 [Bryonia marmorata] >QIT04302.1 photosystem I assembly protein Ycf3 [Bryonia marmorata] >QIT04725.1 photosystem I assembly protein Ycf3 [Cyclanthera pedata] >QWQ50153.1 photosystem I assembly protein Ycf3 [Cyclanthera pedata])

HSP 1 Score: 321 bits (823), Expect = 2.31e-110
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 0 

Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG-------NYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG       NYAEAL+NYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALENYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 NLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 170
                  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 -------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of IVF0002353 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-62
Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0 

Query: 42  DGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQ 101
           +GNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQ
Sbjct: 6   EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 65

Query: 102 AFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQN 161
           AFNNMAVICHY        RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQN
Sbjct: 66  AFNNMAVICHY--------RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQN 125

Query: 162 WLKITRRFK 171
           WL ITRRF+
Sbjct: 126 WLTITRRFE 126

The following BLAST results are available for this feature:
BLAST of IVF0002353 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZH42.8e-8891.53Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1[more]
Q49KZ71.6e-8388.70Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71... [more]
A0ZZ361.6e-8388.70Photosystem I assembly protein Ycf3 OS=Gossypium barbadense OX=3634 GN=ycf3 PE=3... [more]
Q2L9061.6e-8388.70Photosystem I assembly protein Ycf3 OS=Gossypium hirsutum OX=3635 GN=ycf3 PE=3 S... [more]
Q9MTP01.6e-8388.70Photosystem I assembly protein Ycf3 OS=Oenothera elata subsp. hookeri OX=85636 G... [more]
BLAST of IVF0002353 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6G8QRP23.2e-8792.57Photosystem I assembly protein Ycf3 OS=Rubus amabilis OX=616954 GN=ycf3 PE=3 SV=... [more]
A0A7T7D5363.2e-8792.57Hypothetical chloroplast RF34 OS=Rubus sachalinensis OX=59502 GN=ycf3 PE=4 SV=1[more]
A0A218KG301.0e-8591.53Photosystem I assembly protein Ycf3 OS=Cucumis sativus var. hardwickii OX=319220... [more]
G3ETY61.0e-8591.53Photosystem I assembly protein Ycf3 OS=Cucumis melo subsp. melo OX=412675 GN=ycf... [more]
A0A1S4EU101.0e-8591.53Photosystem I assembly protein Ycf3 OS=Cucumis melo OX=3656 GN=ycf3 PE=3 SV=1[more]
BLAST of IVF0002353 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG5222305.18.40e-11394.71photosystem assembly related protein [Salix suchowensis][more]
YP_009758243.11.00e-11292.57hypothetical chloroplast RF34 [Rubus amabilis] >YP_010142801.1 hypothetical chlo... [more]
YP_004841784.18.07e-11191.53hypothetical chloroplast RF34 [Cucumis melo subsp. melo] >YP_009004045.1 hypothe... [more]
YP_009325990.11.19e-11091.01photosystem I assembly protein Ycf3 [Citrullus lanatus] >YP_009348032.1 photosys... [more]
YP_009751907.12.31e-11090.96photosystem I assembly protein Ycf3 [Cyclanthera pedata] >YP_009752328.1 photosy... [more]
BLAST of IVF0002353 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00360.13.5e-6287.60Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 66..99
e-value: 3.2E-5
score: 33.4
coord: 115..148
e-value: 120.0
score: 5.3
coord: 29..62
e-value: 200.0
score: 3.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 66..99
score: 10.8564
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 67..97
e-value: 5.5E-9
score: 35.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 23..168
e-value: 3.4E-18
score: 68.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 36..158
NoneNo IPR availablePANTHERPTHR26312TETRATRICOPEPTIDE REPEAT PROTEIN 5coord: 1..170
NoneNo IPR availablePANTHERPTHR26312:SF159PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3coord: 1..170
NoneNo IPR availablePROSITEPS50293TPR_REGIONcoord: 66..97
score: 9.159513
IPR022818Photosystem I Ycf3, assemblyHAMAPMF_00439Ycf3coord: 1..170
score: 36.5942

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002353.2IVF0002353.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0005515 protein binding