IVF0002344 (gene) Melon (IVF77) v1

Overview
NameIVF0002344
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionnucleotide-sugar uncharacterized transporter 3
Locationchr04: 7719580 .. 7719840 (+)
RNA-Seq ExpressionIVF0002344
SyntenyIVF0002344
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCACATCATCGTGTTCTTCTCCCAAATCCCAATTCCAAATCCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAAGATATCATTGAAGCCATTGAATTCAGAGAAGAATTTGATGTTGCTGTTGTCGGATCCTCCTCGCGACACTAAAGAGAAAGACCGATTGATCAGAGTCGATGAGAAGCTCTCTAGAGGATCCTCCATGACCAAACGAGGAGCCTATGTTGCTCTCTCTTACACGGCTTGCAGTTGTGTGTAA

mRNA sequence

ATGCTCCACATCATCGTGTTCTTCTCCCAAATCCCAATTCCAAATCCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAAGATATCATTGAAGCCATTGAATTCAGAGAAGAATTTGATGTTGCTGTTGTCGGATCCTCCTCGCGACACTAAAGAGAAAGACCGATTGATCAGAGTCGATGAGAAGCTCTCTAGAGGATCCTCCATGACCAAACGAGGAGCCTATGTTGCTCTCTCTTACACGGCTTGCAGTTGTGTGTAA

Coding sequence (CDS)

ATGCTCCACATCATCGTGTTCTTCTCCCAAATCCCAATTCCAAATCCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAAGATATCATTGAAGCCATTGAATTCAGAGAAGAATTTGATGTTGCTGTTGTCGGATCCTCCTCGCGACACTAAAGAGAAAGACCGATTGATCAGAGTCGATGAGAAGCTCTCTAGAGGATCCTCCATGACCAAACGAGGAGCCTATGTTGCTCTCTCTTACACGGCTTGCAGTTGTGTGTAA

Protein sequence

MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYTACSCV
Homology
[Close]
BLAST of IVF0002344 vs. ExPASy Swiss-Prot
Match: A8MRY9 (UDP-N-acetylglucosamine transporter UGNT1 OS=Arabidopsis thaliana OX=3702 GN=UGNT1 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.3e-04
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 38 NLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYTACS 85
          N +L +SDPP   +       VD++L +GS+MTKRGAY ALSY AC+
Sbjct: 4  NPVLPVSDPPLAGENDSDGKGVDDRLFKGSAMTKRGAYAALSYMACA 50

[Close]
BLAST of IVF0002344 vs. ExPASy TrEMBL
Match: A0A5A7T635 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001410 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60
          MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD
Sbjct: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60

Query: 61 EKLSRGSSMTKRGAYVALSYTACS 85
          EKLSRGSSMTKRGAYVALSYTACS
Sbjct: 61 EKLSRGSSMTKRGAYVALSYTACS 84

[Close]
BLAST of IVF0002344 vs. ExPASy TrEMBL
Match: A0A5D3BAI3 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002090 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60
          MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD
Sbjct: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60

Query: 61 EKLSRGSSMTKRGAYVALSYTACS 85
          EKLSRGSSMTKRGAYVALSYTACS
Sbjct: 61 EKLSRGSSMTKRGAYVALSYTACS 84

[Close]
BLAST of IVF0002344 vs. ExPASy TrEMBL
Match: A0A5D3E2E6 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00340 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.3e-16
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 21 TAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSY 80
          ++ ASSKISLKPLN EKNLML +SDPP  ++EKDRL R D+KL RGSSMTKRG+Y ALSY
Sbjct: 4  SSNASSKISLKPLNHEKNLMLPMSDPPHGSEEKDRLNRGDKKLFRGSSMTKRGSYAALSY 63

Query: 81 TACSC 86
           ACSC
Sbjct: 64 IACSC 68

[Close]
BLAST of IVF0002344 vs. ExPASy TrEMBL
Match: A0A5D3E6J4 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007510 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.3e-16
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 22  AKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYT 81
           AKA SK+SLKP NSEKNLML +SDPP  T++KDRLIR DEKL RGSSMTKRGAY ALSY 
Sbjct: 38  AKARSKMSLKPSNSEKNLMLPVSDPPHGTEDKDRLIRGDEKLFRGSSMTKRGAYAALSYM 97

Query: 82  ACS 85
           AC+
Sbjct: 98  ACA 100

[Close]
BLAST of IVF0002344 vs. ExPASy TrEMBL
Match: A0A5A7TBQ5 (Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003740 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 28 ISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYTACS 85
          +SLKP NSEKNLML +SDPP  T++KDRLIR DEKL RGSSMTKRGAY ALSY AC+
Sbjct: 1  MSLKPSNSEKNLMLPVSDPPHGTEDKDRLIRGDEKLFRGSSMTKRGAYAALSYMACA 57

[Close]
BLAST of IVF0002344 vs. NCBI nr
Match: TYJ95906.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 4.37e-46
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60
          MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD
Sbjct: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60

Query: 61 EKLSRGSSMTKRGAYVALSYTACS 84
          EKLSRGSSMTKRGAYVALSYTACS
Sbjct: 61 EKLSRGSSMTKRGAYVALSYTACS 84

[Close]
BLAST of IVF0002344 vs. NCBI nr
Match: KAA0036839.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 8.54e-46
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60
          MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD
Sbjct: 1  MLHIIVFFSQIPIPNPFLLFTAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVD 60

Query: 61 EKLSRGSSMTKRGAYVALSYTACS 84
          EKLSRGSSMTKRGAYVALSYTACS
Sbjct: 61 EKLSRGSSMTKRGAYVALSYTACS 84

[Close]
BLAST of IVF0002344 vs. NCBI nr
Match: KAA0065956.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa] >TYK30273.1 putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 4.06e-23
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 21 TAKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSY 80
          ++ ASSKISLKPLN EKNLML +SDPP  ++EKDRL R D+KL RGSSMTKRG+Y ALSY
Sbjct: 4  SSNASSKISLKPLNHEKNLMLPMSDPPHGSEEKDRLNRGDKKLFRGSSMTKRGSYAALSY 63

Query: 81 TACSC 85
           ACSC
Sbjct: 64 IACSC 68

[Close]
BLAST of IVF0002344 vs. NCBI nr
Match: TYK31438.1 (putative UDP-sugar transporter [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.75e-20
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0 

Query: 22 AKASSKISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYT 81
          AKA SK+SLKP NSEKNLML +SDPP  T++KDRLIR DEKL RGSSMTKRGAY ALSY 
Sbjct: 38 AKARSKMSLKPSNSEKNLMLPVSDPPHGTEDKDRLIRGDEKLFRGSSMTKRGAYAALSYM 97

Query: 82 AC 83
          AC
Sbjct: 98 AC 99

[Close]
BLAST of IVF0002344 vs. NCBI nr
Match: XP_008466419.1 (PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 1.16e-17
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0 

Query: 28 ISLKPLNSEKNLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYTAC 83
          +SLKP NSEKNLML +SDPP  T++KDRLIR DEKL RGSSMTKRGAY ALSY AC
Sbjct: 1  MSLKPSNSEKNLMLPVSDPPHGTEDKDRLIRGDEKLFRGSSMTKRGAYAALSYMAC 56

[Close]
BLAST of IVF0002344 vs. TAIR 10
Match: AT4G32272.1 (Nucleotide/sugar transporter family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.5e-05
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 38 NLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYTACS 85
          N +L +SDPP   +       VD++L +GS+MTKRGAY ALSY AC+
Sbjct: 4  NPVLPVSDPPLAGENDSDGKGVDDRLFKGSAMTKRGAYAALSYMACA 50

[Close]
BLAST of IVF0002344 vs. TAIR 10
Match: AT4G32272.2 (Nucleotide/sugar transporter family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.5e-05
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 38 NLMLLLSDPPRDTKEKDRLIRVDEKLSRGSSMTKRGAYVALSYTACS 85
          N +L +SDPP   +       VD++L +GS+MTKRGAY ALSY AC+
Sbjct: 4  NPVLPVSDPPLAGENDSDGKGVDDRLFKGSAMTKRGAYAALSYMACA 50

The following BLAST results are available for this feature:
BLAST of IVF0002344 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A8MRY96.3e-0451.06UDP-N-acetylglucosamine transporter UGNT1 OS=Arabidopsis thaliana OX=3702 GN=UGN... [more]
BLAST of IVF0002344 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6353.8e-36100.00Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BAI33.8e-36100.00Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3E2E64.3e-1673.85Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3E6J44.3e-1677.78Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TBQ51.5e-1377.19Putative UDP-sugar transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
BLAST of IVF0002344 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ95906.14.37e-46100.00putative UDP-sugar transporter [Cucumis melo var. makuwa][more]
KAA0036839.18.54e-46100.00putative UDP-sugar transporter [Cucumis melo var. makuwa][more]
KAA0065956.14.06e-2373.85putative UDP-sugar transporter [Cucumis melo var. makuwa] >TYK30273.1 putative U... [more]
TYK31438.11.75e-2079.03putative UDP-sugar transporter [Cucumis melo var. makuwa][more]
XP_008466419.11.16e-1778.57PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Cucumis melo][more]
BLAST of IVF0002344 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32272.14.5e-0551.06Nucleotide/sugar transporter family protein [more]
AT4G32272.24.5e-0551.06Nucleotide/sugar transporter family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002344.1IVF0002344.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0015787 UDP-glucuronic acid transmembrane transport
biological_process GO:0015789 UDP-N-acetylgalactosamine transmembrane transport
biological_process GO:1990569 UDP-N-acetylglucosamine transmembrane transport
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005689 U12-type spliceosomal complex
molecular_function GO:0015297 antiporter activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0005461 UDP-glucuronic acid transmembrane transporter activity
molecular_function GO:0005463 UDP-N-acetylgalactosamine transmembrane transporter activity
molecular_function GO:0005462 UDP-N-acetylglucosamine transmembrane transporter activity