IVF0002342 (gene) Melon (IVF77) v1

Overview
NameIVF0002342
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibosomal protein L5
Locationchr04: 15701438 .. 15701656 (-)
RNA-Seq ExpressionIVF0002342
SyntenyIVF0002342
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTCTACGCAGTCAGAAATTGATACAGAAAAGGGGTTCGACAGGAAAGTCCTTTCAATCCAATCCATTCTTGAAGTCCAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAGAAAGCACTCTCCGAAGGCATGAAATGTCCAATTTTTTTCTTCAAAATCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCTGGCCGAAATATATAA

mRNA sequence

ATGGAGATTCTACGCAGTCAGAAATTGATACAGAAAAGGGGTTCGACAGGAAAGTCCTTTCAATCCAATCCATTCTTGAAGTCCAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAGAAAGCACTCTCCGAAGGCATGAAATGTCCAATTTTTTTCTTCAAAATCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCTGGCCGAAATATATAA

Coding sequence (CDS)

ATGGAGATTCTACGCAGTCAGAAATTGATACAGAAAAGGGGTTCGACAGGAAAGTCCTTTCAATCCAATCCATTCTTGAAGTCCAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAGAAAGCACTCTCCGAAGGCATGAAATGTCCAATTTTTTTCTTCAAAATCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCTGGCCGAAATATATAA

Protein sequence

MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQNHYRNSNVFLKFSGRNI
Homology
[Close]
BLAST of IVF0002342 vs. ExPASy Swiss-Prot
Match: Q05492 (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEILR QK IQ +RGSTGKSF+SNPFL+SNKDKGYVSDLAR+S LR H MSNF ++
Sbjct: 55  MEILRGQKFIQTERGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVR 110

[Close]
BLAST of IVF0002342 vs. ExPASy Swiss-Prot
Match: P49388 (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI R QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 53  MEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNF 105

[Close]
BLAST of IVF0002342 vs. ExPASy Swiss-Prot
Match: P42793 (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-14
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEI   QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF ++
Sbjct: 53  MEIPCGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVR 108

[Close]
BLAST of IVF0002342 vs. ExPASy Swiss-Prot
Match: P51409 (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 7.6e-11
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKD-KGYVSDLARESTLRRHEMSNFFLQ 56
           MEI   QKL ++R STGKSF+SNPFL SNKD KGYVSDLAR+STLR H MS+F ++
Sbjct: 55  MEISCGQKL-KQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVR 109

[Close]
BLAST of IVF0002342 vs. ExPASy TrEMBL
Match: A0A5A7SYB1 (Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48303G00010 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.2e-16
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 103 MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 154

[Close]
BLAST of IVF0002342 vs. ExPASy TrEMBL
Match: G3EU44 (Ribosomal protein L5 OS=Cucumis melo subsp. melo OX=412675 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.2e-16
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 107

[Close]
BLAST of IVF0002342 vs. ExPASy TrEMBL
Match: A0A3S9JIG3 (Ribosomal protein L5 OS=Cucumis melo var. momordica OX=2034244 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.2e-16
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 107

[Close]
BLAST of IVF0002342 vs. ExPASy TrEMBL
Match: G3EIZ3 (Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.9e-15
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of IVF0002342 vs. ExPASy TrEMBL
Match: Q7Y6H0 (Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-14
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEIL  QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILCGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of IVF0002342 vs. NCBI nr
Match: AEN56134.1 (ribosomal protein L5 [Cucumis melo subsp. melo] >AZP40310.1 ribosomal protein L5 [Cucumis melo var. momordica])

HSP 1 Score: 94.0 bits (232), Expect = 6.00e-22
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 52
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 107

[Close]
BLAST of IVF0002342 vs. NCBI nr
Match: KAA0034876.1 (ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.65e-21
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 52
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 103 MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 154

[Close]
BLAST of IVF0002342 vs. NCBI nr
Match: YP_004849341.1 (ribosomal protein L5 [Cucumis sativus] >ADZ10768.1 ribosomal protein L5 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.47e-20
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 55
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of IVF0002342 vs. NCBI nr
Match: AAP33159.1 (ribosomal protein L5 [Cucumis sativus] >AAP33161.1 ribosomal protein L5 [Cucumis sativus] >AAP33162.1 ribosomal protein L5 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 2.33e-19
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 55
           MEIL  QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILCGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of IVF0002342 vs. NCBI nr
Match: PKI31295.1 (hypothetical protein CRG98_048315 [Punica granatum])

HSP 1 Score: 82.4 bits (202), Expect = 4.74e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 1  MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 55
          MEILR QK I+ +RGSTGKSFQSNPFL+SNKDK YVSDLAR+STLR H MSNF ++
Sbjct: 1  MEILRGQKFIRTERGSTGKSFQSNPFLESNKDKRYVSDLARQSTLRGHGMSNFLVR 56

[Close]
BLAST of IVF0002342 vs. TAIR 10
Match: AT2G07725.1 (Ribosomal L5P family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI R QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 53  MEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNF 105

[Close]
BLAST of IVF0002342 vs. TAIR 10
Match: ATMG00210.1 (ribosomal protein L5 )

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI R QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 53  MEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNF 105

The following BLAST results are available for this feature:
BLAST of IVF0002342 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q054923.0e-1576.7960S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ... [more]
P493881.5e-1481.1360S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S... [more]
P427937.3e-1475.0060S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ... [more]
P514097.6e-1169.6460S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=... [more]
BLAST of IVF0002342 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SYB16.2e-1690.38Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
G3EU446.2e-1690.38Ribosomal protein L5 OS=Cucumis melo subsp. melo OX=412675 GN=rpl5 PE=3 SV=1[more]
A0A3S9JIG36.2e-1690.38Ribosomal protein L5 OS=Cucumis melo var. momordica OX=2034244 GN=rpl5 PE=3 SV=1[more]
G3EIZ36.9e-1581.82Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=3 SV=1[more]
Q7Y6H05.8e-1480.00Ribosomal protein L5 OS=Cucumis sativus OX=3659 GN=rpl5 PE=3 SV=1[more]
BLAST of IVF0002342 vs. NCBI nr
Match NameE-valueIdentityDescription
AEN56134.16.00e-2290.38ribosomal protein L5 [Cucumis melo subsp. melo] >AZP40310.1 ribosomal protein L5... [more]
KAA0034876.11.65e-2190.38ribosomal protein L5 [Cucumis melo var. makuwa][more]
YP_004849341.11.47e-2081.82ribosomal protein L5 [Cucumis sativus] >ADZ10768.1 ribosomal protein L5 [Cucumis... [more]
AAP33159.12.33e-1980.00ribosomal protein L5 [Cucumis sativus] >AAP33161.1 ribosomal protein L5 [Cucumis... [more]
PKI31295.14.74e-1876.79hypothetical protein CRG98_048315 [Punica granatum][more]
BLAST of IVF0002342 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07725.11.0e-1581.13Ribosomal L5P family protein [more]
ATMG00210.11.0e-1581.13ribosomal protein L5 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002342.1IVF0002342.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome