IVF0002273 (gene) Melon (IVF77) v1

Overview
NameIVF0002273
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Locationchr09: 530817 .. 532844 (+)
RNA-Seq ExpressionIVF0002273
SyntenyIVF0002273
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATCACATCACGTCAGTCTTGGAGGGGAAGATTAAGATCGGTTGGGTTTAAGAAGATTACGACCGGTTGGGATTAGTCTTGGAGAGGAAGCTACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCTGCTCGTACCAAATCGGTTGAGGATCGACAGCAAATGGAATCGATTGTCGCGGCCGAGTTTCGCCGCAACGCCAAGCAAATTGATCGGAAAAATTTCATCTACATTGAGTACCTTCTCCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGCCACAGTTCGATTGTCTACGCTCGATCCCAATCCCGAGCCTTGAAATTGGGTGTACATTTCTTCGATTATTGGGTATTACTCTTCTTGGTAGGATCAATTTTGAACCCTAGAAATTAAACTGCTTTCTTTCTTTCCTTTTGATGATTATTTGTAATCTTAGGCATGAATGCAGTTTAGTAGTGGGAAGTGGTTGTAAATTGAGCAAATGTATCAACACCAATTTGGAAACTCTGTCGGTTTTATTCACAAATTATTTGATTATGGGAGTATTCCATACCACTTACTTAATCAATTGCATTCACAACAATTATTCAATTGAAACGAGTAATGTCATGATAGCTCAAATAGAGAAATGTCAAACTATTTATAACAAAATAGCAAAATAAATAAAACACTCACAGACTTCTATCAACCTTTCAACCTGAAAAGTTTCAAGTTTAGCAGTGTAATACCTTGTGAGCTAAACTCTTGTTCTGACCTTTTGAACATATACAAAGTGATTATGGCATTTGATTGGTGTGACTTTGAAAGGGAATTTTGCAACCTATAACAAAGGGTGGTGAAAGATATTTGTGAGCTGCTTAAAGTGTTTGTAACTTAGTCTCTCTTATTCTGCCTCCAAATTCAACACAGGTATTTAATTACCATCTCTCTCTCTATATATTTTATTGTTTAACATTATTTTCTAACTTAAGCCATTTTTCCTTTTTAATCTCTGCTTCCAAGGCCTTCCTAAAATCGGCTGCTTTAAGTGGACTGTCATTTAAAAAATTGGGATATTTGAAGGAGTTCAAAGACAAACGGACCGAAAGGAAACCATATAGATTCTACTTGACACAACTCAACTTTATAAGTAAGCACATAATTTCACTTCTCTTAATGAAAGTGCAGTTTCTTACCAAAGATAAAATAAAACTAAACTTGGGTTGTTGGTTATGTGAATTGTGCAAGGGAACCCTTGTTGTTTCTTCAATTAGTTTAGGGAGCCTAAACTTTTATCTTTCTGTGGGTTTTGTGTATAAAGAAAGTGTACCCTCCATTTTGAATCTCAATAAAAGAATCTTTTCAATTGGGCTCAAGGTCCCCTTAGACGTGGGTGTGATTGCACCGAATTGTGTTACCAACTTGGTTGTATTATGTTTTTTCCTCTGTCCTATGCTATTTACATGGTTGATAGCTGGAGAGAAAACTTACTTTTCCGGATAAAACTGTGCTTTTTCACTTCTAGTCGGAAATTTTTTGAAACCATTCATTGCAGATTTTACTACTAAGTTGATCATATTTGTGTTTTAAGCTCTTAATATCATGCAATTGATCATGTAATTTTTGTTCAACTAACTAGTAATTCTCGATTTCTCGGTTGCTGTTCTAGGTGTTACATTAGTTCTTTGTCAAGCAGATCCATTGCTTAATGGTGGATCCAGAGAATCCGTGCTCGTAAGAAAGTGGTGAGAGATCATGAAGATGAAAATGAAGTGTCTTGGAGTGATTATTTTTGTTCGAATCATTTGCCCTTTCTAGCTCCTTGTTTTTTAGGTGGAGGTTAAAAAGTTCGGTTATAGTTTGTGGTCTTACACTTACCCAATGTGCATGCGCATTCTTGTTTTTATCGAACGTTTTATTATCTAATGAATGCTTCTGTGATGTATTAAACATTGTGTATTGTGTTTGTATTATTTTTAATCCTAAAATTAGAATTACTTTACCACTA

mRNA sequence

CAATCACATCACGTCAGTCTTGGAGGGGAAGATTAAGATCGGTTGGGTTTAAGAAGATTACGACCGGTTGGGATTAGTCTTGGAGAGGAAGCTACAATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCTGCTCGTACCAAATCGGTTGAGGATCGACAGCAAATGGAATCGATTGTCGCGGCCGAGTTTCGCCGCAACGCCAAGCAAATTGATCGGAAAAATTTCATCTACATTGAGTACCTTCTCCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGCCACAGTTCGATTGTCTACGCTCGATCCCAATCCCGAGCCTTGAAATTGGGTGTACATTTCTTCGATTATTGGGTATTACTCTTCTTGGTAGGATCAATTTTGAACCCTAGAAATTAAACTGCTTTCTTTCTTTCCTTTTGATGATTATTTGTAATCTTAGGCATGAATGCAGTTTAGTAGTGGGAAGTGGTTGTAAATTGAGCAAATGTATCAACACCAATTTGGAAACTCTGTCGGTTTTATTCACAAATTATTTGATTATGGGAGTATTCCATACCACTTACTTAATCAATTGCATTCACAACAATTATTCAATTGAAACGAGTAATGTCATGATAGCTCAAATAGAGAAATGTCAAACTATTTATAACAAAATAGCAAAATAAATAAAACACTCACAGACTTCTATCAACCTTTCAACCTGAAAAGTTTCAAGTTTAGCAGTGTAATACCTTGTGAGCTAAACTCTTGTTCTGACCTTTTGAACATATACAAAGTGATTATGGCATTTGATTGGTGTGACTTTGAAAGGGAATTTTGCAACCTATAACAAAGGGTGGTGAAAGATATTTGTGAGCTGCTTAAAGTGTTTGTAACTTAGTCTCTCTTATTCTGCCTCCAAATTCAACACAGGTATTTAATTACCATCTCTCTCTCTATATATTTTATTGTTTAACATTATTTTCTAACTTAAGCCATTTTTCCTTTTTAATCTCTGCTTCCAAGGCCTTCCTAAAATCGGCTGCTTTAAGTGGACTGTCATTTAAAAAATTGGGATATTTGAAGGAGTTCAAAGACAAACGGACCGAAAGGAAACCATATAGATTCTACTTGACACAACTCAACTTTATAAGTGTTACATTAGTTCTTTGTCAAGCAGATCCATTGCTTAATGGTGGATCCAGAGAATCCGTGCTCGTAAGAAAGTGGTGAGAGATCATGAAGATGAAAATGAAGTGTCTTGGAGTGATTATTTTTGTTCGAATCATTTGCCCTTTCTAGCTCCTTGTTTTTTAGGTGGAGGTTAAAAAGTTCGGTTATAGTTTGTGGTCTTACACTTACCCAATGTGCATGCGCATTCTTGTTTTTATCGAACGTTTTATTATCTAATGAATGCTTCTGTGATGTATTAAACATTGTGTATTGTGTTTGTATTATTTTTAATCCTAAAATTAGAATTACTTTACCACTA

Coding sequence (CDS)

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCTGCTCGTACCAAATCGGTTGAGGATCGACAGCAAATGGAATCGATTGTCGCGGCCGAGTTTCGCCGCAACGCCAAGCAAATTGATCGGAAAAATTTCATCTACATTGAGTACCTTCTCCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGCCACAGTTCGATTGTCTACGCTCGATCCCAATCCCGAGCCTTGA

Protein sequence

MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Homology
[Close]
BLAST of IVF0002273 vs. ExPASy Swiss-Prot
Match: B0K036 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhaf1 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-07
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60
          M++LS LQ+QVLSLYR  LRA R K        E+ V AEFR++A  + R + + IEYL 
Sbjct: 1  MSRLSRLQRQVLSLYRELLRAGRGK-----PGAEARVRAEFRQHA-SLPRSDVLRIEYLY 60

Query: 61 RRGNKQLDQLKSPATVRLSTL----DPNPEP 88
          RRG +QL  L+S     + T      P  EP
Sbjct: 61 RRGRRQLQLLRSGHATAMGTFVRPRGPTEEP 85

[Close]
BLAST of IVF0002273 vs. ExPASy Swiss-Prot
Match: A6ZYX9 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=SCY_1267 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
          +LSGLQK+VL LYRA +R A TK  E++    + +  EF +  + + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGK-YRNLPRKDFTTIEHLLRV 63

Query: 63 GNKQLDQLKSP 74
          GNK++     P
Sbjct: 64 GNKKIATFSHP 73

[Close]
BLAST of IVF0002273 vs. ExPASy Swiss-Prot
Match: Q3E785 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
          +LSGLQK+VL LYRA +R A TK  E++    + +  EF +  + + RK+F  IE+LLR 
Sbjct: 4  RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGK-YRNLPRKDFTTIEHLLRV 63

Query: 63 GNKQLDQLKSP 74
          GNK++     P
Sbjct: 64 GNKKIATFSHP 73

[Close]
BLAST of IVF0002273 vs. ExPASy Swiss-Prot
Match: Q9US02 (Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC664.12c PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.8e-06
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 4  LSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRG 63
          LSGLQ+QV+  YR  L AA+ K     ++  + V  EFR+N + I +++F YIE+LLR G
Sbjct: 3  LSGLQRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKN-QTISKRDFFYIEHLLRVG 62

Query: 64 NKQLDQLKSP 74
           +Q +    P
Sbjct: 63 QRQYEAYSRP 71

[Close]
BLAST of IVF0002273 vs. ExPASy Swiss-Prot
Match: Q54HG5 (Succinate dehydrogenase assembly factor 1A, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=sdhaf1A PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.8e-06
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 5  SGLQKQVLSLYRAFLRAARTKSVED-RQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRG 64
          SGLQK VLSLYR+FLR +  K +++    + + +  +FR  A  I +++   IE LL +G
Sbjct: 9  SGLQKAVLSLYRSFLRVSNKKEMDNPSSSISNYIKTQFRLKATTIQKRDINKIESLLVKG 68

Query: 65 NKQLDQLKSP 74
           +QL+Q++ P
Sbjct: 69 KRQLEQIQDP 78

[Close]
BLAST of IVF0002273 vs. ExPASy TrEMBL
Match: A0A1S3CAJ2 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103498675 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60
          MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60

Query: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 88
          RRGNKQLDQLKSPATVRLSTLDPNPEP
Sbjct: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87

[Close]
BLAST of IVF0002273 vs. ExPASy TrEMBL
Match: A0A0A0KST3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.5e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60
          MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVA EFRRNAKQIDRKNFIYIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLL 60

Query: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 88
          RRGNKQLDQLKSPATVRLSTLDPNPEP
Sbjct: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87

[Close]
BLAST of IVF0002273 vs. ExPASy TrEMBL
Match: A0A6J1CJC1 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012137 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
          KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QID KNFIYIEYLLRR
Sbjct: 6  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRR 65

Query: 63 GNKQLDQLKSPATVRLSTLD 83
          GNKQLDQLKSPATVRLS+++
Sbjct: 66 GNKQLDQLKSPATVRLSSMN 85

[Close]
BLAST of IVF0002273 vs. ExPASy TrEMBL
Match: A0A6J1EX50 (LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111438897 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.2e-27
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 3   KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
           KLSG+QKQVLSLY AFLRAAR+KS EDR+++ES+V+AEFRRNAK IDRK+FIYIEYLLRR
Sbjct: 26  KLSGMQKQVLSLYXAFLRAARSKSAEDRKRIESVVSAEFRRNAKLIDRKDFIYIEYLLRR 85

Query: 63  GNKQLDQLKSPATVRLSTLDPNPEP 88
           GNKQLDQL+SPATV LSTL  N  P
Sbjct: 86  GNKQLDQLRSPATVGLSTLTLNSSP 110

[Close]
BLAST of IVF0002273 vs. ExPASy TrEMBL
Match: A0A6J1I7F5 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471950 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 66/85 (77.65%), Postives = 75/85 (88.24%), Query Frame = 0 

Query: 3   KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
           KLSG+Q QVLSLYRAFLRAAR+KS EDR+ +ES+V+AEFRRNAK ID KNFIYIEYLLRR
Sbjct: 38  KLSGMQMQVLSLYRAFLRAARSKSAEDRKGIESVVSAEFRRNAKLIDHKNFIYIEYLLRR 97

Query: 63  GNKQLDQLKSPATVRLSTLDPNPEP 88
           G+KQLDQL+SPATV LS+L  N  P
Sbjct: 98  GDKQLDQLRSPATVGLSSLTLNSSP 122

[Close]
BLAST of IVF0002273 vs. NCBI nr
Match: XP_008459591.1 (PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo])

HSP 1 Score: 164 bits (416), Expect = 6.12e-51
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60
          MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60

Query: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87
          RRGNKQLDQLKSPATVRLSTLDPNPEP
Sbjct: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87

[Close]
BLAST of IVF0002273 vs. NCBI nr
Match: XP_011656085.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus] >KGN52665.1 hypothetical protein Csa_008140 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 2.49e-50
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60
          MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVA EFRRNAKQIDRKNFIYIEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQIDRKNFIYIEYLL 60

Query: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87
          RRGNKQLDQLKSPATVRLSTLDPNPEP
Sbjct: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87

[Close]
BLAST of IVF0002273 vs. NCBI nr
Match: XP_038890134.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida])

HSP 1 Score: 145 bits (367), Expect = 1.83e-43
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLL 60
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQIDRKNFI+IEYLL
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQIDRKNFIHIEYLL 60

Query: 61 RRGNKQLDQLKSPATVRLSTLDPNPEP 87
          RRGNKQLDQLKSP TVR ST++P+ EP
Sbjct: 61 RRGNKQLDQLKSPGTVRFSTINPHSEP 87

[Close]
BLAST of IVF0002273 vs. NCBI nr
Match: XP_022141880.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia])

HSP 1 Score: 134 bits (337), Expect = 7.76e-39
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 3  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
          KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QID KNFIYIEYLLRR
Sbjct: 6  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRR 65

Query: 63 GNKQLDQLKSPATVRLSTLD 82
          GNKQLDQLKSPATVRLS+++
Sbjct: 66 GNKQLDQLKSPATVRLSSMN 85

[Close]
BLAST of IVF0002273 vs. NCBI nr
Match: XP_023525064.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023525065.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132 bits (332), Expect = 1.21e-37
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 0 

Query: 3   KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRR 62
           KLSG+Q+QVLSLYRAFLRAAR+KS EDR+Q+ES+V+AEFRRNAK IDRKNFIYIEYLLRR
Sbjct: 34  KLSGMQRQVLSLYRAFLRAARSKSAEDRRQIESVVSAEFRRNAKLIDRKNFIYIEYLLRR 93

Query: 63  GNKQLDQLKSPATVRLSTLDPNPEP 87
           GNKQLDQL+SPATV LS+L  N  P
Sbjct: 94  GNKQLDQLRSPATVGLSSLTLNSSP 118

[Close]
BLAST of IVF0002273 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 2  AKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLR 61
          +KLSG+QKQVLSLYR FLRAAR++ +EDR+++E IV+ EFR N+K++DRKNF YIEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 62 RGNKQLDQLKSPATVRLSTL 82
           G KQLDQLKSPA V LS++
Sbjct: 64 LGTKQLDQLKSPAIVSLSSI 83

[Close]
BLAST of IVF0002273 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 2  AKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLR 61
          +KLSG+QKQVLSLYR FLRAAR++ +EDR+++E IV+ EFR N+K++DRKNF YIEYLLR
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQYIEYLLR 63

Query: 62 RGNKQLDQLKSPATVRLSTL 82
           G KQLDQLKSPA V LS++
Sbjct: 64 LGTKQLDQLKSPAIVSLSSI 83

The following BLAST results are available for this feature:
BLAST of IVF0002273 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B0K0366.1e-0743.96Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus OX... [more]
A6ZYX91.8e-0643.66Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevi... [more]
Q3E7851.8e-0643.66Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevi... [more]
Q9US026.8e-0641.43Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces ... [more]
Q54HG56.8e-0640.00Succinate dehydrogenase assembly factor 1A, mitochondrial OS=Dictyostelium disco... [more]
BLAST of IVF0002273 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CAJ21.6e-37100.00succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656... [more]
A0A0A0KST34.5e-3798.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1[more]
A0A6J1CJC12.2e-2887.50succinate dehydrogenase assembly factor 1, mitochondrial OS=Momordica charantia ... [more]
A0A6J1EX507.2e-2780.00LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS... [more]
A0A6J1I7F51.8e-2577.65succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita maxima OX=... [more]
BLAST of IVF0002273 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008459591.16.12e-51100.00PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis mel... [more]
XP_011656085.12.49e-5098.85succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus] >KGN5... [more]
XP_038890134.11.83e-4387.36succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida][more]
XP_022141880.17.76e-3987.50succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia][more]
XP_023525064.11.21e-3781.18succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. ... [more]
BLAST of IVF0002273 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39725.11.3e-2570.00LYR family of Fe/S cluster biogenesis protein [more]
AT2G39725.21.3e-2570.00LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 9..69
e-value: 2.2E-13
score: 50.1
NoneNo IPR availablePANTHERPTHR13675LYR MOTIF-CONTAINING PROTEIN 2coord: 3..81
NoneNo IPR availablePANTHERPTHR13675:SF1SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIALcoord: 3..81
NoneNo IPR availableCDDcd20268Complex1_LYR_SDHAF1_LYRM8coord: 5..69
e-value: 6.58457E-26
score: 88.8074

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002273.3IVF0002273.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034553 mitochondrial respiratory chain complex II assembly
cellular_component GO:0005739 mitochondrion