IVF0002259 (gene) Melon (IVF77) v1

Overview


Name	IVF0002259
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Location	chr06: 23475578 .. 23475799 (-)
RNA-Seq Expression	IVF0002259
Synteny	IVF0002259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCAATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAATTTATGA

mRNA sequence

ATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCAATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAATTTATGA

Coding sequence (CDS)

ATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCAATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAATTTATGA

Protein sequence

MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

Homology

[Close]

BLAST of IVF0002259 vs. ExPASy TrEMBL
Match: A0A5A7TZF3 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001550 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MALVNTSSNTWTMMFDGATNEIGHGVGAILMSP+GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 482 MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSM 541

Query: 61  GVRMAYEMKIKNL 74
           GVRMAYEMK+K L
Sbjct: 542 GVRMAYEMKVKKL 554

[Close]

BLAST of IVF0002259 vs. ExPASy TrEMBL
Match: A0A5D3BMZ2 (Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00450 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MALVNTSSNTWTMMFDGATNEIGHGV AILMSP+GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 626 MALVNTSSNTWTMMFDGATNEIGHGVRAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSM 685

Query: 61  GVRMAYEMKIKNL 74
           GVRMAYEMKIK L
Sbjct: 686 GVRMAYEMKIKKL 698

[Close]

BLAST of IVF0002259 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.4e-33
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MA++NTS NTWTMMFDGATNEIGHGVG ILMSP+GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 698 MAIINTSPNTWTMMFDGATNEIGHGVGVILMSPDGKWYPLTAKLYFDCTNNMAEYEACSM 757

Query: 61  GVRMAYEMKIKNL 74
           GVRMAYEMKIK L
Sbjct: 758 GVRMAYEMKIKKL 770

[Close]

BLAST of IVF0002259 vs. ExPASy TrEMBL
Match: A0A5D3C389 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003060 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MALVNTSSNTWTM FDGATNEIGHGVGAILMS +GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 260 MALVNTSSNTWTMKFDGATNEIGHGVGAILMSHDGKWYPLTAKLYFDCTNNMAEYEACSM 319

Query: 61  GVRMAYEMKIKNL 74
           GVRMAYEMK+K L
Sbjct: 320 GVRMAYEMKVKTL 332

[Close]

BLAST of IVF0002259 vs. ExPASy TrEMBL
Match: A0A5A7T2W3 (Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00120 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-29
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           +A+VNTSSNTWT+MFDGAT EIGHGVGAILMSP+GKWYPLTAKLYFD TNNMA+YEA S+
Sbjct: 217 VAIVNTSSNTWTVMFDGATKEIGHGVGAILMSPDGKWYPLTAKLYFDYTNNMAKYEASSI 276

Query: 61  GVRMAYEMKIKNL 74
           GVR+AYEMKIKNL
Sbjct: 277 GVRIAYEMKIKNL 289

[Close]

BLAST of IVF0002259 vs. NCBI nr
Match: KAA0046609.1 (hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 4.08e-41
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MALVNTSSNTWTMMFDGATNEIGHGVGAILMSP+GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 482 MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSM 541

Query: 61  GVRMAYEMKIKNL 73
           GVRMAYEMK+K L
Sbjct: 542 GVRMAYEMKVKKL 554

[Close]

BLAST of IVF0002259 vs. NCBI nr
Match: TYK05800.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.49e-40
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MALVNTSSNTWTM FDGATNEIGHGVGAILMS +GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 260 MALVNTSSNTWTMKFDGATNEIGHGVGAILMSHDGKWYPLTAKLYFDCTNNMAEYEACSM 319

Query: 61  GVRMAYEMKIKNL 73
           GVRMAYEMK+K L
Sbjct: 320 GVRMAYEMKVKTL 332

[Close]

BLAST of IVF0002259 vs. NCBI nr
Match: TYK00092.1 (protein NYNRIN-like [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 3.83e-40
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MALVNTSSNTWTMMFDGATNEIGHGV AILMSP+GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 626 MALVNTSSNTWTMMFDGATNEIGHGVRAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSM 685

Query: 61  GVRMAYEMKIKNL 73
           GVRMAYEMKIK L
Sbjct: 686 GVRMAYEMKIKKL 698

[Close]

BLAST of IVF0002259 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 1.42e-39
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           MA++NTS NTWTMMFDGATNEIGHGVG ILMSP+GKWYPLTAKLYFDCTNNMAEYEACSM
Sbjct: 698 MAIINTSPNTWTMMFDGATNEIGHGVGVILMSPDGKWYPLTAKLYFDCTNNMAEYEACSM 757

Query: 61  GVRMAYEMKIKNL 73
           GVRMAYEMKIK L
Sbjct: 758 GVRMAYEMKIKKL 770

[Close]

BLAST of IVF0002259 vs. NCBI nr
Match: KAA0037720.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 4.76e-36
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1   MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSM 60
           +A+VNTSSNTWT+MFDGAT EIGHGVGAILMSP+GKWYPLTAKLYFD TNNMA+YEA S+
Sbjct: 217 VAIVNTSSNTWTVMFDGATKEIGHGVGAILMSPDGKWYPLTAKLYFDYTNNMAKYEASSI 276

Query: 61  GVRMAYEMKIKNL 73
           GVR+AYEMKIKNL
Sbjct: 277 GVRIAYEMKIKNL 289

The following BLAST results are available for this feature:

BLAST of IVF0002259 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZF3	3.9e-34	95.89	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00155...	[more]
A0A5D3BMZ2	2.5e-33	95.89	Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G...	[more]
A0A5A7U7X5	7.4e-33	91.78	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]
A0A5D3C389	2.2e-32	93.15	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T2W3	2.9e-29	86.30	Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=...	[more]

BLAST of IVF0002259 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046609.1	4.08e-41	95.89	hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]	[more]
TYK05800.1	1.49e-40	93.15	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK00092.1	3.83e-40	95.89	protein NYNRIN-like [Cucumis melo var. makuwa]	[more]
KAA0049671.1	1.42e-39	91.78	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0037720.1	4.76e-36	86.30	putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu...	[more]

BLAST of IVF0002259 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 15..73 e-value: 5.5E-5 score: 23.0
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 7..73 score: 8.833818
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 9..73 e-value: 5.9E-10 score: 41.3
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 9..71
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..71
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 9..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002259.1	IVF0002259.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding