IVF0002213 (gene) Melon (IVF77) v1

Overview
NameIVF0002213
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr04: 4400927 .. 4401346 (-)
RNA-Seq ExpressionIVF0002213
SyntenyIVF0002213
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGAAAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCATCAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAAGTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA

mRNA sequence

ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGAAAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCATCAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAAGTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA

Coding sequence (CDS)

ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGAAAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCATCAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAAGTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA

Protein sequence

MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
Homology
BLAST of IVF0002213 vs. ExPASy TrEMBL
Match: A0A5A7VBW5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00070 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.3e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP
Sbjct: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK
Sbjct: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 140
           ISRLQLITLKFEALKMSED
Sbjct: 121 ISRLQLITLKFEALKMSED 139

BLAST of IVF0002213 vs. ExPASy TrEMBL
Match: A0A5A7TAN7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003180 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.1e-60
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSASRPPV DGKNY YWKPRMIFF+KTLDEKAW+VLV+GYEPPMVTVD V VP
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 140
           ISRLQLIT KFEAL+M+ED
Sbjct: 121 ISRLQLITSKFEALEMTED 139

BLAST of IVF0002213 vs. ExPASy TrEMBL
Match: A0A5D3BBI3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00740 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 117/139 (84.17%), Postives = 126/139 (90.65%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSAS PPVLDGKNYSYWKP MIFFIKTLD KAW+VLV GYEPPMVTV+ V VP
Sbjct: 1   MEIIREGPSASHPPVLDGKNYSYWKPHMIFFIKTLDGKAWRVLVGGYEPPMVTVNEVSVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPE DWTDAEEQAS GNARA+NAIF G+DLNVFKLINS +TAKEA +IL+VAYE TSKVK
Sbjct: 61  KPEIDWTDAEEQASVGNARAINAIFKGVDLNVFKLINSCTTAKEARKILKVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 140
           ISRLQLIT KFEALKM+ED
Sbjct: 121 ISRLQLITSKFEALKMTED 139

BLAST of IVF0002213 vs. ExPASy TrEMBL
Match: A0A5D3BCD8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 117/139 (84.17%), Postives = 128/139 (92.09%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSASRPPV DGKNY YWKPRMIF IKTLDEKAW+VLV+GYEPPMVTVD V VP
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFSIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 140
           ISRLQLIT KFEAL+M++D
Sbjct: 121 ISRLQLITSKFEALEMTKD 139

BLAST of IVF0002213 vs. ExPASy TrEMBL
Match: A0A5A7SY66 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002670 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.3e-58
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSASRPPVLDGKNYSYWKPRMIFFIKTL  KAW+ LV+GYEPPMVTVD V VP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLYGKAWRALVAGYEPPMVTVDGVSVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPE DWT A+EQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61  KPEVDWTYAKEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAGKILEVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 140
           IS+LQLIT KFEALKM+ED
Sbjct: 121 ISKLQLITSKFEALKMTED 139

BLAST of IVF0002213 vs. NCBI nr
Match: KAA0063201.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK23492.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (717), Expect = 3.39e-95
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP
Sbjct: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK
Sbjct: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 139
           ISRLQLITLKFEALKMSED
Sbjct: 121 ISRLQLITLKFEALKMSED 139

BLAST of IVF0002213 vs. NCBI nr
Match: KAA0038419.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (613), Expect = 1.32e-75
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSASRPPV DGKNY YWKPRMIFF+KTLDEKAW+VLV+GYEPPMVTVD V VP
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 139
           ISRLQLIT KFEAL+M+ED
Sbjct: 121 ISRLQLITSKFEALEMTED 139

BLAST of IVF0002213 vs. NCBI nr
Match: KAA0035513.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31018.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (597), Expect = 2.90e-75
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSASRPPVLDGKNYSYWKPRMIFFIKTL  KAW+ LV+GYEPPMVTVD V VP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLYGKAWRALVAGYEPPMVTVDGVSVP 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPE DWT A+EQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61  KPEVDWTYAKEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAGKILEVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 139
           IS+LQLIT KFEALKM+ED
Sbjct: 121 ISKLQLITSKFEALKMTED 139

BLAST of IVF0002213 vs. NCBI nr
Match: TYK07991.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 1.32e-74
Identity = 117/139 (84.17%), Postives = 123/139 (88.49%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREG S S PPVLDGKNYSYWKPRMI FIKTLD KAW+ LV+GYEPPM+TVD V VP
Sbjct: 3   MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVP 62

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPE DWTDAEEQAS GNARALNAIFNG+DLNVFK IN  ST KEA RILEVAYEETSKVK
Sbjct: 63  KPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCSTTKEAWRILEVAYEETSKVK 122

Query: 121 ISRLQLITLKFEALKMSED 139
           ISRLQLIT KFEALKMS+D
Sbjct: 123 ISRLQLITSKFEALKMSKD 141

BLAST of IVF0002213 vs. NCBI nr
Match: KAA0025734.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (584), Expect = 3.53e-74
Identity = 114/139 (82.01%), Postives = 123/139 (88.49%), Query Frame = 0

Query: 1   MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
           M+IIREGPSASRPPVLDGKNYSYWKPRMIF IKTLD KAW+ LV+GYEPPMVT+D V V 
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
           KPE DWTD EEQAS GNARA+NAIFNG+DLNVFKLINS +T KEA +ILEVAYE TSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 ISRLQLITLKFEALKMSED 139
           IS LQLIT KFE LKM+ED
Sbjct: 121 ISSLQLITSKFEVLKMTED 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VBW55.3e-72100.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774... [more]
A0A5A7TAN76.1e-6084.89Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G... [more]
A0A5D3BBI31.5e-5884.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BCD81.5e-5884.17Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G... [more]
A0A5A7SY664.3e-5884.17Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... [more]
Match NameE-valueIdentityDescription
KAA0063201.13.39e-95100.00gag-pol polyprotein [Cucumis melo var. makuwa] >TYK23492.1 gag-pol polyprotein [... [more]
KAA0038419.11.32e-7584.89gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0035513.12.90e-7584.17gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31018.1 gag-pol polyprotein [... [more]
TYK07991.11.32e-7484.17gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0025734.13.53e-7482.01gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 5..139
NoneNo IPR availablePANTHERPTHR34676:SF8MYOSIN-11-LIKEcoord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002213.2IVF0002213.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding