Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGAAAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCATCAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAAGTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA
mRNA sequence
ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGAAAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCATCAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAAGTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA
Coding sequence (CDS)
ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGAAAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCATCAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAAGTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA
Protein sequence
MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
Homology
BLAST of IVF0002213 vs. ExPASy TrEMBL
Match:
A0A5A7VBW5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00070 PE=4 SV=1)
HSP 1 Score: 280.0 bits (715), Expect = 5.3e-72
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP
Sbjct: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK
Sbjct: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 140
ISRLQLITLKFEALKMSED
Sbjct: 121 ISRLQLITLKFEALKMSED 139
BLAST of IVF0002213 vs. ExPASy TrEMBL
Match:
A0A5A7TAN7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003180 PE=4 SV=1)
HSP 1 Score: 240.0 bits (611), Expect = 6.1e-60
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSASRPPV DGKNY YWKPRMIFF+KTLDEKAW+VLV+GYEPPMVTVD V VP
Sbjct: 1 MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61 KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 140
ISRLQLIT KFEAL+M+ED
Sbjct: 121 ISRLQLITSKFEALEMTED 139
BLAST of IVF0002213 vs. ExPASy TrEMBL
Match:
A0A5D3BBI3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00740 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 117/139 (84.17%), Postives = 126/139 (90.65%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSAS PPVLDGKNYSYWKP MIFFIKTLD KAW+VLV GYEPPMVTV+ V VP
Sbjct: 1 MEIIREGPSASHPPVLDGKNYSYWKPHMIFFIKTLDGKAWRVLVGGYEPPMVTVNEVSVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPE DWTDAEEQAS GNARA+NAIF G+DLNVFKLINS +TAKEA +IL+VAYE TSKVK
Sbjct: 61 KPEIDWTDAEEQASVGNARAINAIFKGVDLNVFKLINSCTTAKEARKILKVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 140
ISRLQLIT KFEALKM+ED
Sbjct: 121 ISRLQLITSKFEALKMTED 139
BLAST of IVF0002213 vs. ExPASy TrEMBL
Match:
A0A5D3BCD8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00170 PE=4 SV=1)
HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 117/139 (84.17%), Postives = 128/139 (92.09%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSASRPPV DGKNY YWKPRMIF IKTLDEKAW+VLV+GYEPPMVTVD V VP
Sbjct: 1 MEIIREGPSASRPPVPDGKNYLYWKPRMIFSIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61 KPKVDWTDAEEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 140
ISRLQLIT KFEAL+M++D
Sbjct: 121 ISRLQLITSKFEALEMTKD 139
BLAST of IVF0002213 vs. ExPASy TrEMBL
Match:
A0A5A7SY66 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002670 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 4.3e-58
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSASRPPVLDGKNYSYWKPRMIFFIKTL KAW+ LV+GYEPPMVTVD V VP
Sbjct: 1 MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLYGKAWRALVAGYEPPMVTVDGVSVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPE DWT A+EQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61 KPEVDWTYAKEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAGKILEVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 140
IS+LQLIT KFEALKM+ED
Sbjct: 121 ISKLQLITSKFEALKMTED 139
BLAST of IVF0002213 vs. NCBI nr
Match:
KAA0063201.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK23492.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 280 bits (717), Expect = 3.39e-95
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP
Sbjct: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK
Sbjct: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 139
ISRLQLITLKFEALKMSED
Sbjct: 121 ISRLQLITLKFEALKMSED 139
BLAST of IVF0002213 vs. NCBI nr
Match:
KAA0038419.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 240 bits (613), Expect = 1.32e-75
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSASRPPV DGKNY YWKPRMIFF+KTLDEKAW+VLV+GYEPPMVTVD V VP
Sbjct: 1 MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61 KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 139
ISRLQLIT KFEAL+M+ED
Sbjct: 121 ISRLQLITSKFEALEMTED 139
BLAST of IVF0002213 vs. NCBI nr
Match:
KAA0035513.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31018.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 234 bits (597), Expect = 2.90e-75
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSASRPPVLDGKNYSYWKPRMIFFIKTL KAW+ LV+GYEPPMVTVD V VP
Sbjct: 1 MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLYGKAWRALVAGYEPPMVTVDGVSVP 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPE DWT A+EQAS GNARA+NAIFNG+DLNVFKLINS +TAKEA +ILEVAYE TSKVK
Sbjct: 61 KPEVDWTYAKEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAGKILEVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 139
IS+LQLIT KFEALKM+ED
Sbjct: 121 ISKLQLITSKFEALKMTED 139
BLAST of IVF0002213 vs. NCBI nr
Match:
TYK07991.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 234 bits (596), Expect = 1.32e-74
Identity = 117/139 (84.17%), Postives = 123/139 (88.49%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREG S S PPVLDGKNYSYWKPRMI FIKTLD KAW+ LV+GYEPPM+TVD V VP
Sbjct: 3 MEIIREGLSTSLPPVLDGKNYSYWKPRMILFIKTLDGKAWRTLVAGYEPPMITVDGVSVP 62
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPE DWTDAEEQAS GNARALNAIFNG+DLNVFK IN ST KEA RILEVAYEETSKVK
Sbjct: 63 KPEVDWTDAEEQASVGNARALNAIFNGMDLNVFKFINFCSTTKEAWRILEVAYEETSKVK 122
Query: 121 ISRLQLITLKFEALKMSED 139
ISRLQLIT KFEALKMS+D
Sbjct: 123 ISRLQLITSKFEALKMSKD 141
BLAST of IVF0002213 vs. NCBI nr
Match:
KAA0025734.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 229 bits (584), Expect = 3.53e-74
Identity = 114/139 (82.01%), Postives = 123/139 (88.49%), Query Frame = 0
Query: 1 MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVP 60
M+IIREGPSASRPPVLDGKNYSYWKPRMIF IKTLD KAW+ LV+GYEPPMVT+D V V
Sbjct: 1 MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60
Query: 61 KPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILEVAYEETSKVK 120
KPE DWTD EEQAS GNARA+NAIFNG+DLNVFKLINS +T KEA +ILEVAYE TSKVK
Sbjct: 61 KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120
Query: 121 ISRLQLITLKFEALKMSED 139
IS LQLIT KFE LKM+ED
Sbjct: 121 ISSLQLITSKFEVLKMTED 139
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VBW5 | 5.3e-72 | 100.00 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774... | [more] |
A0A5A7TAN7 | 6.1e-60 | 84.89 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G... | [more] |
A0A5D3BBI3 | 1.5e-58 | 84.17 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3BCD8 | 1.5e-58 | 84.17 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G... | [more] |
A0A5A7SY66 | 4.3e-58 | 84.17 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... | [more] |
Match Name | E-value | Identity | Description | |
KAA0063201.1 | 3.39e-95 | 100.00 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK23492.1 gag-pol polyprotein [... | [more] |
KAA0038419.1 | 1.32e-75 | 84.89 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0035513.1 | 2.90e-75 | 84.17 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31018.1 gag-pol polyprotein [... | [more] |
TYK07991.1 | 1.32e-74 | 84.17 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0025734.1 | 3.53e-74 | 82.01 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [... | [more] |
Match Name | E-value | Identity | Description | |