IVF0002206 (gene) Melon (IVF77) v1

Overview


Name	IVF0002206
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Poly(A)-specific ribonuclease
Location	chr07: 22765099 .. 22765698 (-)
RNA-Seq Expression	IVF0002206
Synteny	IVF0002206

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCGTTCGACAAGTTTGGTATCATAATCTTACCCAAGAATTGACCATTCTCAACGATCGACTTTTCAAGTTTCCAGTGATCGCGATGGACACTGAGTTCCCCGGCTTTCTCCGATCAACTTCGAGAGGTGCTCCCGAGGAACATCTCTACCAAGATTTGAAGTTCAATCTAAACCATTTAAAAATTCTTCAACTGGGTCTCACTTTGATGGATGAGAACGAGCATGTTGGGTTGTCTTGGGTGTTTACCTTTTCTGATTTTGATGAACAAACAGACTTCTCTAGTCCTACGTCAATCCAATATTTGAAGAACAAGAAACAGAGGAAAGACGGAATTCCATCAGCTGAATTCCGACATGCATTTTTGCCGATCTTGTTTAGCAATCAAATAACTAAATGGATCACATTTCATGGCATTCACGATGTTGCTTATTTGTTGAAGCTAATGATGATTAGAACCATGCCGGATTCCATGGTGGAATTCGCCATCATAGCTCAACGTCACCTTGGTACAGTCAACGACCTAAAACACATGATTCGCAATTGTGAACACTTAATGATGGACTTAAGAGACTTGTCGAGTTACTCAATGTGA

mRNA sequence

ATGAGTTTCGTTCGACAAGTTTGGTATCATAATCTTACCCAAGAATTGACCATTCTCAACGATCGACTTTTCAAGTTTCCAGTGATCGCGATGGACACTGAGTTCCCCGGCTTTCTCCGATCAACTTCGAGAGGTGCTCCCGAGGAACATCTCTACCAAGATTTGAAGTTCAATCTAAACCATTTAAAAATTCTTCAACTGGGTCTCACTTTGATGGATGAGAACGAGCATGTTGGGTTGTCTTGGGTGTTTACCTTTTCTGATTTTGATGAACAAACAGACTTCTCTAGTCCTACGTCAATCCAATATTTGAAGAACAAGAAACAGAGGAAAGACGGAATTCCATCAGCTGAATTCCGACATGCATTTTTGCCGATCTTGTTTAGCAATCAAATAACTAAATGGATCACATTTCATGGCATTCACGATGTTGCTTATTTGTTGAAGCTAATGATGATTAGAACCATGCCGGATTCCATGGTGGAATTCGCCATCATAGCTCAACGTCACCTTGGTACAGTCAACGACCTAAAACACATGATTCGCAATTGTGAACACTTAATGATGGACTTAAGAGACTTGTCGAGTTACTCAATGTGA

Coding sequence (CDS)

ATGAGTTTCGTTCGACAAGTTTGGTATCATAATCTTACCCAAGAATTGACCATTCTCAACGATCGACTTTTCAAGTTTCCAGTGATCGCGATGGACACTGAGTTCCCCGGCTTTCTCCGATCAACTTCGAGAGGTGCTCCCGAGGAACATCTCTACCAAGATTTGAAGTTCAATCTAAACCATTTAAAAATTCTTCAACTGGGTCTCACTTTGATGGATGAGAACGAGCATGTTGGGTTGTCTTGGGTGTTTACCTTTTCTGATTTTGATGAACAAACAGACTTCTCTAGTCCTACGTCAATCCAATATTTGAAGAACAAGAAACAGAGGAAAGACGGAATTCCATCAGCTGAATTCCGACATGCATTTTTGCCGATCTTGTTTAGCAATCAAATAACTAAATGGATCACATTTCATGGCATTCACGATGTTGCTTATTTGTTGAAGCTAATGATGATTAGAACCATGCCGGATTCCATGGTGGAATTCGCCATCATAGCTCAACGTCACCTTGGTACAGTCAACGACCTAAAACACATGATTCGCAATTGTGAACACTTAATGATGGACTTAAGAGACTTGTCGAGTTACTCAATGTGA

Protein sequence

MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM

Homology

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BLAST of IVF0002206 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 4   VRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL---RSTSRGAPEEHLYQDLKFNLN 63
           +R+VW  NL +E+ ++ D +  FP +AMDTEFPG +     T +   + H Y+ LK N+N
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYH-YETLKTNVN 71

Query: 64  HLKILQLGLTLMDENEHVGLS-------WVFTFSDFDEQTDFSSPTSIQYLKNK-----K 123
            LK++QLGLT  +E  ++          W F F +FD  +D  +  SI+ LK       K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 124 QRKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIA 183
              DGI S  F    +   +  N+   W+TFH  +D  YLLKL+  + +PDS  +F  + 
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 184 QRHLGTVNDLKHMIRNCEHLMMDLRDLS 196
             +  TV D+KH+++ C  L   L  L+
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHGGLNKLA 218

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BLAST of IVF0002206 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = 0


Query: 5   RQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL-RSTSRGAPEEHLYQDLKFNLNHLK 64
           R+VW  NL  E  ++++ +  +P I+MDTEFPG + +S  R    + LY  LK N++ L 
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 65  ILQLGLTLMDENE---------HVGLSWVFTFSDFDEQTDFSSPTSIQYLKN-----KKQ 124
           ++Q+GLTL D N          H G  W F F DFD   D  +P SI+ L+      ++ 
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 125 RKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQ 184
            +DG+ S  F    +   L  N+   W+TFH  +D  YL+K++  R +P ++ EF  + +
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 185 RHLG-TVNDLKHMIRNCE 186
              G  V D+KHM++ CE
Sbjct: 200 VLFGERVYDVKHMMKFCE 217

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BLAST of IVF0002206 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-24
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = 0


Query: 16  LTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDEN 75
           ++++ D L  +  IA+DTEFP  LR T++ A +E  Y D+ F+++  K++QLGLTL D N
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 76  EHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN-----KKQRKDGIP-SAEFRHAFLPILFS 135
             +G +W   FSDF    D  +  SI++L+      +K R++GI     F   F  +  +
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 136 NQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHL 188
            +   W+TFHG +D+AYLLK      +P +   F+    R LG+V DLK M   CE L
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL 177

[Close]

BLAST of IVF0002206 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 5.7e-24
Identity = 68/209 (32.54%), Postives = 108/209 (51.67%), Query Frame = 0


Query: 4   VRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL---RSTSRGAPEEHLYQDLKFNLN 63
           +R+VW  NL  E+ ++ + +  FP +AMDTEFPG +     T +   E H Y+ LK N+N
Sbjct: 12  IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYH-YETLKTNVN 71

Query: 64  HLKILQLGLTLMDENEHVGLS--------WVFTFSDFDEQTDFSSPTSIQYLKNK----- 123
            LK++QLGLT  DE  ++           W F F +FD ++D  +  SI+ L+       
Sbjct: 72  ILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFV 131

Query: 124 KQRKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAII 183
           K  + GI S  F    +   +  N+   W+TFH  +D  YLLKL+  + +P++   F  +
Sbjct: 132 KNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEM 191

Query: 184 AQRHLGTVNDLKHMIRNCEHLMMDLRDLS 196
              +   V D+KH+++ C  L   L  L+
Sbjct: 192 ISVYFPRVYDIKHLMKFCNSLHGGLNKLA 219

[Close]

BLAST of IVF0002206 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-23
Identity = 66/213 (30.99%), Postives = 109/213 (51.17%), Query Frame = 0


Query: 4   VRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPE--------EHLYQDL 63
           +R+VW HNL QE+ ++   +  FP +AMDTEFPG +  T    P         E+ Y  L
Sbjct: 16  IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75

Query: 64  KFNLNHLKILQLGLTLMDENEHVGLS-------WVFTFSDFDEQTDFSSPTSIQYLKN-- 123
           K N+N LK++QLGLTL DE  ++          W F F +F+  +D  +  SI+ L+   
Sbjct: 76  KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135

Query: 124 ---KKQRKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVE 183
              +K  + G+ +  F    +   +  N    W+TFH  +D  YLLKL+  + +P+ + +
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISD 195

Query: 184 FAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLS 196
           F    ++    V D+K+++  C +L   L  ++
Sbjct: 196 FFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIA 228

[Close]

BLAST of IVF0002206 vs. ExPASy TrEMBL
Match: A0A5D3CZR2 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001900 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.8e-110
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN
Sbjct: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFR 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFR
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFR 120

Query: 121 HAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHM 180
           HAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHM
Sbjct: 121 HAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHM 180

Query: 181 IRNCEHLMMDLRDLSSYSM 200
           IRNCEHLMMDLRDLSSYSM
Sbjct: 181 IRNCEHLMMDLRDLSSYSM 199

[Close]

BLAST of IVF0002206 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.2e-95
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVRQVWYHNLTQEL ILND+LFKFPVIAMDTEFPGFLRST RGAPEEH YQDLKFNLN
Sbjct: 1   MSFVRQVWYHNLTQELVILNDQLFKFPVIAMDTEFPGFLRSTLRGAPEEHFYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN------KKQRKDGI 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN      KKQRKDGI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTV 180
           PSAEFR AFLPI  SN+ITKWITFHGI+DVAYLLKLMMIRTMP+SMVEFAIIAQRHLGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 NDLKHMIRNCEHLM 189
           NDLKHMIRNCE+LM
Sbjct: 181 NDLKHMIRNCEYLM 194

[Close]

BLAST of IVF0002206 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.0e-94
Identity = 174/194 (89.69%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVR+VWYHN  QEL ILND+LFKFPVIAMDTEFPGFLRST RGAPEEH YQDLKFNLN
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN------KKQRKDGI 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN      KKQRKDGI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTV 180
           PSAEFR AFLPI  SN+ITKWITFHGI+DVAYLLKLMMIRTMP+SMVEFAIIAQRHLGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 NDLKHMIRNCEHLM 189
           NDLKHMIRNCE+LM
Sbjct: 181 NDLKHMIRNCEYLM 194

[Close]

BLAST of IVF0002206 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.0e-94
Identity = 174/194 (89.69%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVR+VWYHN  QEL ILND+LFKFPVIAMDTEFPGFLRST RGAPEEH YQDLKFNLN
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN------KKQRKDGI 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN      KKQRKDGI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTV 180
           PSAEFR AFLPI  SN+ITKWITFHGI+DVAYLLKLMMIRTMP+SMVEFAIIAQRHLGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 NDLKHMIRNCEHLM 189
           NDLKHMIRNCE+LM
Sbjct: 181 NDLKHMIRNCEYLM 194

[Close]

BLAST of IVF0002206 vs. ExPASy TrEMBL
Match: A0A1S3BYU5 (putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC103494885 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.0e-92
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 31  MDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFD 90
           MDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFD
Sbjct: 1   MDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFD 60

Query: 91  EQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKL 150
           EQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKL
Sbjct: 61  EQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKL 120

Query: 151 MMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM 200
           MMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM
Sbjct: 121 MMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM 169

[Close]

BLAST of IVF0002206 vs. NCBI nr
Match: TYK17042.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 409 bits (1051), Expect = 3.72e-144
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN
Sbjct: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFR 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFR
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKQRKDGIPSAEFR 120

Query: 121 HAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHM 180
           HAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHM
Sbjct: 121 HAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHM 180

Query: 181 IRNCEHLMMDLRDLSSYSM 199
           IRNCEHLMMDLRDLSSYSM
Sbjct: 181 IRNCEHLMMDLRDLSSYSM 199

[Close]

BLAST of IVF0002206 vs. NCBI nr
Match: KAA0044544.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 359 bits (922), Expect = 2.19e-123
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVRQVWYHNLTQEL ILND+LFKFPVIAMDTEFPGFLRST RGAPEEH YQDLKFNLN
Sbjct: 1   MSFVRQVWYHNLTQELVILNDQLFKFPVIAMDTEFPGFLRSTLRGAPEEHFYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKK------QRKDGI 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKK      QRKDGI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTV 180
           PSAEFR AFLPI  SN+ITKWITFHGI+DVAYLLKLMMIRTMP+SMVEFAIIAQRHLGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 NDLKHMIRNCEHLM 188
           NDLKHMIRNCE+LM
Sbjct: 181 NDLKHMIRNCEYLM 194

[Close]

BLAST of IVF0002206 vs. NCBI nr
Match: XP_008454486.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 354 bits (909), Expect = 2.09e-121
Identity = 174/194 (89.69%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVR+VWYHN  QEL ILND+LFKFPVIAMDTEFPGFLRST RGAPEEH YQDLKFNLN
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKK------QRKDGI 120
           HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKK      QRKDGI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 121 PSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTV 180
           PSAEFR AFLPI  SN+ITKWITFHGI+DVAYLLKLMMIRTMP+SMVEFAIIAQRHLGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 181 NDLKHMIRNCEHLM 188
           NDLKHMIRNCE+LM
Sbjct: 181 NDLKHMIRNCEYLM 194

[Close]

BLAST of IVF0002206 vs. NCBI nr
Match: XP_008454487.2 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo])

HSP 1 Score: 347 bits (891), Expect = 3.21e-120
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 31  MDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFD 90
           MDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFD
Sbjct: 1   MDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDENEHVGLSWVFTFSDFD 60

Query: 91  EQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKL 150
           EQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKL
Sbjct: 61  EQTDFSSPTSIQYLKNKKQRKDGIPSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKL 120

Query: 151 MMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM 199
           MMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM
Sbjct: 121 MMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHLMMDLRDLSSYSM 169

[Close]

BLAST of IVF0002206 vs. NCBI nr
Match: XP_008466654.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >KAA0038652.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa] >TYK31255.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 337 bits (863), Expect = 7.68e-115
Identity = 168/194 (86.60%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MSFVRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLN 60
           MSFVRQVWYHNLTQEL ILND+LFK P+I MDTEF GFLRST RGAPEEHLYQDLKFNLN
Sbjct: 1   MSFVRQVWYHNLTQELAILNDQLFKLPMIVMDTEFLGFLRSTPRGAPEEHLYQDLKFNLN 60

Query: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN------KKQRKDGI 120
           HLKILQLGLTLMD+NEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN      KK RK  I
Sbjct: 61  HLKILQLGLTLMDKNEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNNKWFEFKKHRKYRI 120

Query: 121 PSAEFRHAFLPILFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTV 180
           PSAEFR AFLPI  SN+ITKWITFHGI+DVAYLLKLMMIRTMP+SMVEFA IAQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFATIAQRQLGTV 180

Query: 181 NDLKHMIRNCEHLM 188
           NDLKHMI NCEHLM
Sbjct: 181 NDLKHMICNCEHLM 194

[Close]

BLAST of IVF0002206 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 4   VRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL---RSTSRGAPEEHLYQDLKFNLN 63
           +R+VW  NL +E+ ++ D +  FP +AMDTEFPG +     T +   + H Y+ LK N+N
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYH-YETLKTNVN 71

Query: 64  HLKILQLGLTLMDENEHVGLS-------WVFTFSDFDEQTDFSSPTSIQYLKNK-----K 123
            LK++QLGLT  +E  ++          W F F +FD  +D  +  SI+ LK       K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 124 QRKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIA 183
              DGI S  F    +   +  N+   W+TFH  +D  YLLKL+  + +PDS  +F  + 
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 184 QRHLGTVNDLKHMIRNCEHLMMDLRDLS 196
             +  TV D+KH+++ C  L   L  L+
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHGGLNKLA 218

[Close]

BLAST of IVF0002206 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 4   VRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL---RSTSRGAPEEHLYQDLKFNLN 63
           +R+VW  NL +E+ ++ D +  FP +AMDTEFPG +     T +   + H Y+ LK N+N
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYH-YETLKTNVN 71

Query: 64  HLKILQLGLTLMDENEHVGLS-------WVFTFSDFDEQTDFSSPTSIQYLKNK-----K 123
            LK++QLGLT  +E  ++          W F F +FD  +D  +  SI+ LK       K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 124 QRKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIA 183
              DGI S  F    +   +  N+   W+TFH  +D  YLLKL+  + +PDS  +F  + 
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 184 QRHLGTVNDLKHMIRNCEHLMMDLRDLS 196
             +  TV D+KH+++ C  L   L  L+
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHGGLNKLA 218

[Close]

BLAST of IVF0002206 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 0


Query: 4   VRQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL---RSTSRGAPEEHLYQDLKFNLN 63
           +R+VW  NL +E+ ++ D +  FP +AMDTEFPG +     T +   + H Y+ LK N+N
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYH-YETLKTNVN 71

Query: 64  HLKILQLGLTLMDENEHVGLS-------WVFTFSDFDEQTDFSSPTSIQYLKNK-----K 123
            LK++QLGLT  +E  ++          W F F +FD  +D  +  SI+ LK       K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 124 QRKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIA 183
              DGI S  F    +   +  N+   W+TFH  +D  YLLKL+  + +PDS  +F  + 
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 184 QRHLGTVNDLKHMIRNCEHLMMDLRDLS 196
             +  TV D+KH+++ C  L   L  L+
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHGGLNKLA 218

[Close]

BLAST of IVF0002206 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-27
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = 0


Query: 5   RQVWYHNLTQELTILNDRLFKFPVIAMDTEFPGFL-RSTSRGAPEEHLYQDLKFNLNHLK 64
           R+VW  NL  E  ++++ +  +P I+MDTEFPG + +S  R    + LY  LK N++ L 
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 65  ILQLGLTLMDENE---------HVGLSWVFTFSDFDEQTDFSSPTSIQYLKN-----KKQ 124
           ++Q+GLTL D N          H G  W F F DFD   D  +P SI+ L+      ++ 
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 125 RKDGIPSAEFRHAFLPI-LFSNQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQ 184
            +DG+ S  F    +   L  N+   W+TFH  +D  YL+K++  R +P ++ EF  + +
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 185 RHLG-TVNDLKHMIRNCE 186
              G  V D+KHM++ CE
Sbjct: 200 VLFGERVYDVKHMMKFCE 217

[Close]

BLAST of IVF0002206 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-25
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = 0


Query: 16  LTILNDRLFKFPVIAMDTEFPGFLRSTSRGAPEEHLYQDLKFNLNHLKILQLGLTLMDEN 75
           ++++ D L  +  IA+DTEFP  LR T++ A +E  Y D+ F+++  K++QLGLTL D N
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 76  EHVGLSWVFTFSDFDEQTDFSSPTSIQYLKN-----KKQRKDGIP-SAEFRHAFLPILFS 135
             +G +W   FSDF    D  +  SI++L+      +K R++GI     F   F  +  +
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 136 NQITKWITFHGIHDVAYLLKLMMIRTMPDSMVEFAIIAQRHLGTVNDLKHMIRNCEHL 188
            +   W+TFHG +D+AYLLK      +P +   F+    R LG+V DLK M   CE L
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL 177

The following BLAST results are available for this feature:

BLAST of IVF0002206 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAI2	1.6e-26	34.62	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM2	6.1e-26	34.85	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	3.3e-24	37.08	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	5.7e-24	32.54	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9S9P2	2.2e-23	30.99	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of IVF0002206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZR2	1.8e-110	100.00	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TN62	2.2e-95	91.24	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D333	7.0e-94	89.69	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BY95	7.0e-94	89.69	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1	[more]
A0A1S3BYU5	5.0e-92	100.00	putative CCR4-associated factor 1 homolog 8 OS=Cucumis melo OX=3656 GN=LOC103494...	[more]

BLAST of IVF0002206 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17042.1	3.72e-144	100.00	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]	[more]
KAA0044544.1	2.19e-123	91.24	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]	[more]
XP_008454486.1	2.09e-121	89.69	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039....	[more]
XP_008454487.2	3.21e-120	100.00	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo]	[more]
XP_008466654.1	7.68e-115	86.60	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >KAA003865...	[more]

BLAST of IVF0002206 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80780.1	1.1e-27	34.62	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.1e-27	34.62	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	1.1e-27	34.62	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	4.3e-27	34.85	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	2.4e-25	37.08	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 9..107 e-value: 1.2E-5 score: 24.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..197 e-value: 1.1E-44 score: 154.5
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 3..188
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 3..188
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002206.2	IVF0002206.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity