IVF0002094 (gene) Melon (IVF77) v1

Overview


Name	IVF0002094
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	S locus-related glycoprotein 1 binding pollen coat
Location	chr08: 16315609 .. 16315980 (+)
RNA-Seq Expression	IVF0002094
Synteny	IVF0002094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTCGTATCATCTGCTTTGCTCTTATTTTTTCAAGTTCGTTTCCTTTTATTTCTCCCCCAAATACTATATTATCATGTGTTTCAAAATCAAATAATTATGAGACATATTAGAATATTGCTAAATTTGTATATTTATCTTTTTATGTTTTTGTATATAGTTGTATGATCTTGGTACCTCGAGACGTCTTAGCTGCCAAAAGATGTCAAGACGTTTTATATAACACTGGGTGCTCTCTCAATGACTGTGGAAAGAAATGTTGGGATAAGCATCATACTATTTCATATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

mRNA sequence

ATGGCTTCTTCTCGTATCATCTGCTTTGCTCTTATTTTTTCAAGTTCTTGTATGATCTTGGTACCTCGAGACGTCTTAGCTGCCAAAAGATGTCAAGACGTTTTATATAACACTGGGTGCTCTCTCAATGACTGTGGAAAGAAATGTTGGGATAAGCATCATACTATTTCATATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Coding sequence (CDS)

ATGGCTTCTTCTCGTATCATCTGCTTTGCTCTTATTTTTTCAAGTTCTTGTATGATCTTGGTACCTCGAGACGTCTTAGCTGCCAAAAGATGTCAAGACGTTTTATATAACACTGGGTGCTCTCTCAATGACTGTGGAAAGAAATGTTGGGATAAGCATCATACTATTTCATATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Protein sequence

MASSRIICFALIFSSSCMILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDCGDQKN

Homology

[Close]

BLAST of IVF0002094 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 66/83 (79.52%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MASSRIICFALIFSSSCMILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQC 60
          M SSRIICFALIF+ + ++L  +DV AA+RCQDVLYNTGC+LNDCGKKCW+KHHT+S+QC
Sbjct: 1  MDSSRIICFALIFAVA-LLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQC 60

Query: 61 IPTNPSQTIYACYCFFDCGDQKN 84
          IPTNPSQTIYACYCFFDCG QKN
Sbjct: 61 IPTNPSQTIYACYCFFDCGGQKN 82

[Close]

BLAST of IVF0002094 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-22
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 3  SSRIICFALIFSSSCMILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIP 62
          SS I+  AL  + + MILVP+  LA +RCQD LY+TGC+L DCG+KCW+KHH  S+QCIP
Sbjct: 6  SSWILTIALTIAVA-MILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIP 65

Query: 63 TNPSQTIYACYCFFDCG 80
          T+P QTIYACYCF++CG
Sbjct: 66 TDPGQTIYACYCFYNCG 81

[Close]

BLAST of IVF0002094 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 3  SSRIICFALIFSSSCMILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIP 62
          SS I+   LI + + MI +P+  LAA RCQD+LYN+GC+L DCG+KCW+KHH  S QCIP
Sbjct: 6  SSWILTIVLIIAVA-MISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIP 65

Query: 63 TNPSQTIYACYCFFDCG 80
          T+P QTIYACYCF+ CG
Sbjct: 66 TDPDQTIYACYCFYTCG 80

[Close]

BLAST of IVF0002094 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.8e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 27  AAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 79
           A KRC + LY +GC+L+DCGKKCW+KHH   Y+CI  N +QT YACYC F+C
Sbjct: 62  AQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

[Close]

BLAST of IVF0002094 vs. ExPASy TrEMBL
Match: A0A6J5VH03 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 27 AAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 79
          A KRC++ LY++GC+L DCGKKCWDKHH   + C+  N +Q  YACYC F+C
Sbjct: 42 AQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

[Close]

BLAST of IVF0002094 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 132 bits (332), Expect = 1.91e-38
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 18 MILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFD 77
          ++L  +DV AA+RCQDVLYNTGC+LNDCGKKCW+KHHTIS+QCIPTNPSQTIYACYCFFD
Sbjct: 2  LLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFD 61

Query: 78 CGDQKN 83
          CG QKN
Sbjct: 62 CGGQKN 67

[Close]

BLAST of IVF0002094 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 1.48e-29
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 3  SSRIICFALIFSSSCMILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIP 62
          SS I+  AL  + + MILVP+  LA +RCQD LY+TGC+L DCG+KCW+KHH  S+QCIP
Sbjct: 6  SSWILTIALTIAVA-MILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIP 65

Query: 63 TNPSQTIYACYCFFDCG 79
          T+P QTIYACYCF++CG
Sbjct: 66 TDPGQTIYACYCFYNCG 81

[Close]

BLAST of IVF0002094 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 3.74e-27
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 3  SSRIICFALIFSSSCMILVPRDVLAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIP 62
          SS I+   LI + + MI +P+  LAA RCQD+LYN+GC+L DCG+KCW+KHH  S QCIP
Sbjct: 6  SSWILTIVLIIAVA-MISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIP 65

Query: 63 TNPSQTIYACYCFFDCG 79
          T+P QTIYACYCF+ CG
Sbjct: 66 TDPDQTIYACYCFYTCG 80

[Close]

BLAST of IVF0002094 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 77.8 bits (190), Expect = 2.80e-16
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 27  AAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 78
           A KRC + LY +GC+L+DCGKKCW+KHH   Y+CI  N +QT YACYC F+C
Sbjct: 62  AQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

[Close]

BLAST of IVF0002094 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 75.1 bits (183), Expect = 1.91e-15
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 27 AAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 78
          A KRC++ LY++GC+L DCGKKCWDKHH   + C+  N +Q  YACYC F+C
Sbjct: 42 AQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

The following BLAST results are available for this feature:

BLAST of IVF0002094 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2R3	4.9e-33	79.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1	[more]
A0A5A7THQ7	8.7e-22	63.64	S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O...	[more]
A0A0A0LVZ5	6.3e-20	62.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1	[more]
A0A4Y1RT05	4.8e-12	61.54	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1	[more]
A0A6J5VH03	3.1e-11	57.69	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 S...	[more]

BLAST of IVF0002094 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649772.1	1.91e-38	83.33	hypothetical protein Csa_012405, partial [Cucumis sativus]	[more]
KAA0042348.1	1.48e-29	63.64	S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T...	[more]
KGN64987.1	3.74e-27	62.34	hypothetical protein Csa_022748 [Cucumis sativus]	[more]
BBH07492.1	2.80e-16	61.54	hypothetical protein Prudu_019451 [Prunus dulcis]	[more]
CAB4286917.1	1.91e-15	57.69	unnamed protein product [Prunus armeniaca]	[more]

BLAST of IVF0002094 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 28..78 e-value: 2.7E-6 score: 27.7
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002094.1	IVF0002094.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism