IVF0001997 (gene) Melon (IVF77) v1

Overview
NameIVF0001997
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationtig00195367: 410249 .. 410623 (-)
RNA-Seq ExpressionIVF0001997
SyntenyIVF0001997
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAACATGGAGATTTGCGAGGGGTGGAGATGAAGAAGCAGGATTTCAAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCCACTTGGGTGATTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTCAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGAATCAAACTGCTACTTCTGCAGCGCCATCCTCCGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

mRNA sequence

ATGGATCAAACATGGAGATTTGCGAGGGGTGGAGATGAAGAAGCAGGATTTCAAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCCACTTGGGTGATTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGCGCCATCCTCCGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

Coding sequence (CDS)

ATGGATCAAACATGGAGATTTGCGAGGGGTGGAGATGAAGAAGCAGGATTTCAAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCCACTTGGGTGATTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGCGCCATCCTCCGACCATGTCATCCAACAATCTGTTCAAATTCGATGA

Protein sequence

MDQTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVFAPSSDHVIQQSVQIR
Homology
BLAST of IVF0001997 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 71/124 (57.26%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 1   MDQTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVF- 60
           MDQTWRFARGGDEEAGF MESAMKEEDRDKKRNGNMKSCKIATWVISMVVACL GGLVF 
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  -------------------------------------------------APSSDHVIQQS 75
                                                            APSSDHVIQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

BLAST of IVF0001997 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_011278 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 6.43e-34
Identity = 71/124 (57.26%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 1   MDQTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVF- 60
           MDQTWRFARGGDEEAGF MESAMKEEDRDKKRNGNMKSCKIATWVISMVVACL GGLVF 
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  -------------------------------------------------APSSDHVIQQS 74
                                                            APSSDHVIQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

BLAST of IVF0001997 vs. NCBI nr
Match: KAG6582696.1 (hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 4.78e-10
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 3  QTWRFARGGDEEAGFQMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLMGGLVF 59
          +TW FA GG EEAG  MESAMKE         NMKSCK+ATWV+SM V  ++GG+VF
Sbjct: 4  KTWGFAGGG-EEAGQPMESAMKE---------NMKSCKMATWVVSMAVTSMVGGVVF 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5S11.7e-2457.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN56384.16.43e-3457.26hypothetical protein Csa_011278 [Cucumis sativus][more]
KAG6582696.14.78e-1059.65hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001997.1IVF0001997.1mRNA