IVF0001980 (gene) Melon (IVF77) v1

Overview
NameIVF0001980
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 13709941 .. 13710174 (+)
RNA-Seq ExpressionIVF0001980
SyntenyIVF0001980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTGTCCCAAGTAAATGTCAGGGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

mRNA sequence

ATGGCATTGTCCCAAGTAAATGTCAGGGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

Coding sequence (CDS)

ATGGCATTGTCCCAAGTAAATGTCAGGGGCAACTCTATTCAAGATTTGAAGCATGCTGATGAGATAGGATGCGTGGGATATGGCGGTGCTCACACCACTAATGCACGTCTGCATAACACAAAAAATGTAGCATATGTAAAGAATGGCCCCTATTCCAACACATACAATTGGGGATGGAGAGATCACCTTAACTTCAGTTGGAGAGGTCAAGGTCAGAACAGTCAAGGGCGATAA

Protein sequence

MALSQVNVRGNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQGR
Homology
BLAST of IVF0001980 vs. ExPASy TrEMBL
Match: A0A5A7U640 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00760 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 10  GNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRG 69
           GNSIQDLKHADEIGCVGYGGAHTTNARLHNT+NVAYVKNGPYSNTYNWGWRDHLNFSWRG
Sbjct: 53  GNSIQDLKHADEIGCVGYGGAHTTNARLHNTENVAYVKNGPYSNTYNWGWRDHLNFSWRG 112

Query: 70  QGQNSQGR 78
           QGQNSQGR
Sbjct: 113 QGQNSQGR 120

BLAST of IVF0001980 vs. ExPASy TrEMBL
Match: A0A5A7UTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00070 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MALSQVNVRGNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWR 60
          M L+QVNV  +S+  +KH  E+ CVG  G++ T+    NTK + Y KN PYSNTYN GWR
Sbjct: 18 MVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMITYAKNDPYSNTYNGGWR 77

Query: 61 DHLNFSWRGQGQNSQGR 78
          +H NFSW G GQ++QGR
Sbjct: 78 NHSNFSWGGTGQDNQGR 94

BLAST of IVF0001980 vs. ExPASy TrEMBL
Match: A0A5A7UG80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G001150 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 16 LKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQ 75
          +   +EIGCVG    HT +A L N + + YVKN PYSNTYN GWRDHLNFSW GQGQ  +
Sbjct: 1  MNEVEEIGCVGCSSLHTIDACLLNIETITYVKNDPYSNTYNAGWRDHLNFSWGGQGQGDK 60

BLAST of IVF0001980 vs. ExPASy TrEMBL
Match: A0A5D3BYZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold758G00120 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-12
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 22 IGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQGR 78
          +GCVGYG  H TN    NT+ VAYVKN PYSNTYN GWR H NFSW GQ  N+QGR
Sbjct: 1  MGCVGYGDPHNTNVCPLNTEIVAYVKNDPYSNTYNSGWRYHPNFSWGGQSHNNQGR 56

BLAST of IVF0001980 vs. ExPASy TrEMBL
Match: A0A5D3BKZ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00110 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 16 LKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQ 75
          +   +EIGCVG    HT +A L N + + YVKN PYSNTYN GWR+HLNFSW GQGQ  +
Sbjct: 1  MNEVEEIGCVGCSNLHTIDACLLNIETITYVKNDPYSNTYNAGWREHLNFSWGGQGQGDK 60

BLAST of IVF0001980 vs. NCBI nr
Match: KAA0051353.1 (uncharacterized protein E6C27_scaffold55G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 5.70e-44
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 10  GNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRG 69
           GNSIQDLKHADEIGCVGYGGAHTTNARLHNT+NVAYVKNGPYSNTYNWGWRDHLNFSWRG
Sbjct: 53  GNSIQDLKHADEIGCVGYGGAHTTNARLHNTENVAYVKNGPYSNTYNWGWRDHLNFSWRG 112

Query: 70  QGQNSQGR 77
           QGQNSQGR
Sbjct: 113 QGQNSQGR 120

BLAST of IVF0001980 vs. NCBI nr
Match: KAA0058408.1 (uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK04705.1 uncharacterized protein E5676_scaffold76994G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 3.70e-20
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MALSQVNVRGNSIQDLKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWR 60
          M L+QVNV  +S+  +KH  E+ CVG  G++ T+    NTK + Y KN PYSNTYN GWR
Sbjct: 18 MVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMITYAKNDPYSNTYNGGWR 77

Query: 61 DHLNFSWRGQGQNSQGR 77
          +H NFSW G GQ++QGR
Sbjct: 78 NHSNFSWGGTGQDNQGR 94

BLAST of IVF0001980 vs. NCBI nr
Match: KAA0054822.1 (hypothetical protein E6C27_scaffold437G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 4.21e-17
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 16 LKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQ 72
          +   +EIGCVG    HT +A L N + + YVKN PYSNTYN GWRDHLNFSW GQGQ
Sbjct: 1  MNEVEEIGCVGCSSLHTIDACLLNIETITYVKNDPYSNTYNAGWRDHLNFSWGGQGQ 57

BLAST of IVF0001980 vs. NCBI nr
Match: TYK04238.1 (hypothetical protein E5676_scaffold758G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 6.47e-17
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 22 IGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQNSQGR 77
          +GCVGYG  H TN    NT+ VAYVKN PYSNTYN GWR H NFSW GQ  N+QGR
Sbjct: 1  MGCVGYGDPHNTNVCPLNTEIVAYVKNDPYSNTYNSGWRYHPNFSWGGQSHNNQGR 56

BLAST of IVF0001980 vs. NCBI nr
Match: TYJ99639.1 (hypothetical protein E5676_scaffold562G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.71e-16
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 16 LKHADEIGCVGYGGAHTTNARLHNTKNVAYVKNGPYSNTYNWGWRDHLNFSWRGQGQ 72
          +   +EIGCVG    HT +A L N + + YVKN PYSNTYN GWR+HLNFSW GQGQ
Sbjct: 1  MNEVEEIGCVGCSNLHTIDACLLNIETITYVKNDPYSNTYNAGWREHLNFSWGGQGQ 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6404.6e-3398.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UTC11.1e-1554.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UG802.0e-1260.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BYZ53.4e-1267.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BKZ65.8e-1258.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0051353.15.70e-4498.53uncharacterized protein E6C27_scaffold55G00760 [Cucumis melo var. makuwa][more]
KAA0058408.13.70e-2054.55uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK... [more]
KAA0054822.14.21e-1763.16hypothetical protein E6C27_scaffold437G001150 [Cucumis melo var. makuwa][more]
TYK04238.16.47e-1767.86hypothetical protein E5676_scaffold758G00120 [Cucumis melo var. makuwa][more]
TYJ99639.11.71e-1661.40hypothetical protein E5676_scaffold562G00110 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001980.1IVF0001980.1mRNA