IVF0001876 (gene) Melon (IVF77) v1

Overview


Name	IVF0001876
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr05: 15208164 .. 15208420 (+)
RNA-Seq Expression	IVF0001876
Synteny	IVF0001876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGCCGTGGTGGCGCCACTGAAACGAAGAGAGGCGGCGTCGACGACGACAATAAGGTGCTGAAATGGGGAAACAGCCGGCCTGGGAAAAGGGAAAAGGGAAAGACACGGGTTTAAAGTACGGAAGAGGAAGAGTAAACCCTAGTGGGGCTTGTGGGAAGTTTGACTTCGGTTGGCGGACTCCTGGCGTTCCTAATAGTTTGCTGAACACAATTTTTTTTGGAACCTTGAGAGAACGTTTCGGGCAGGGGTAA

mRNA sequence

ATGAAAGGCCGTGGTGGCGCCACTGAAACGAAGAGAGGCGGCGTCGACGACGACAATAAGGTGCTGAAATGGGGAAACAACACGGGTTTAAAGTACGGAAGAGGAAGAGTAAACCCTAGTGGGGCTTGTGGGAAGTTTGACTTCGGTTGGCGGACTCCTGGCGTTCCTAATAGTTTGCTGAACACAATTTTTTTTGGAACCTTGAGAGAACGTTTCGGGCAGGGGTAA

Coding sequence (CDS)

ATGAAAGGCCGTGGTGGCGCCACTGAAACGAAGAGAGGCGGCGTCGACGACGACAATAAGGTGCTGAAATGGGGAAACAACACGGGTTTAAAGTACGGAAGAGGAAGAGTAAACCCTAGTGGGGCTTGTGGGAAGTTTGACTTCGGTTGGCGGACTCCTGGCGTTCCTAATAGTTTGCTGAACACAATTTTTTTTGGAACCTTGAGAGAACGTTTCGGGCAGGGGTAA

Protein sequence

MKGRGGATETKRGGVDDDNKVLKWGNNTGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG

Homology

[Close]

BLAST of IVF0001876 vs. ExPASy TrEMBL
Match: A0A5D3BKF7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00180 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-34
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKGRGGATETKRGGVDDDNKVLKWGN----------NTGLKYGRGRVNPSGACGKFDFGW 60
          MKGRGGATETKRGGVDDDNKVLKWGN          +TGLKYGRGRVNPSGACGKFDFGW
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSGACGKFDFGW 60

Query: 61 RTPGVPNSLLNTIFFGTLRERFGQG 76
          RTPGVPNSLLNTIFFGTLRERFGQG
Sbjct: 61 RTPGVPNSLLNTIFFGTLRERFGQG 85

[Close]

BLAST of IVF0001876 vs. ExPASy TrEMBL
Match: A0A5A7TFU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00580 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-34
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKGRGGATETKRGGVDDDNKVLKWGN----------NTGLKYGRGRVNPSGACGKFDFGW 60
          MKGRGGATETKRGGVDDDNKVLKWGN          +TGLKYGRGRVNPSGACGKFDFGW
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSGACGKFDFGW 60

Query: 61 RTPGVPNSLLNTIFFGTLRERFGQG 76
          RTPGVPNSLLNTIFFGTLRERFGQG
Sbjct: 61 RTPGVPNSLLNTIFFGTLRERFGQG 85

[Close]

BLAST of IVF0001876 vs. NCBI nr
Match: KAA0040427.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 4.97e-41
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKGRGGATETKRGGVDDDNKVLKWGNN----------TGLKYGRGRVNPSGACGKFDFGW 60
          MKGRGGATETKRGGVDDDNKVLKWGN+          TGLKYGRGRVNPSGACGKFDFGW
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSGACGKFDFGW 60

Query: 61 RTPGVPNSLLNTIFFGTLRERFGQG 75
          RTPGVPNSLLNTIFFGTLRERFGQG
Sbjct: 61 RTPGVPNSLLNTIFFGTLRERFGQG 85

[Close]

BLAST of IVF0001876 vs. NCBI nr
Match: TYJ98688.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 4.97e-41
Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKGRGGATETKRGGVDDDNKVLKWGNN----------TGLKYGRGRVNPSGACGKFDFGW 60
          MKGRGGATETKRGGVDDDNKVLKWGN+          TGLKYGRGRVNPSGACGKFDFGW
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSGACGKFDFGW 60

Query: 61 RTPGVPNSLLNTIFFGTLRERFGQG 75
          RTPGVPNSLLNTIFFGTLRERFGQG
Sbjct: 61 RTPGVPNSLLNTIFFGTLRERFGQG 85

The following BLAST results are available for this feature:

BLAST of IVF0001876 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKF7	2.4e-34	87.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TFU1	2.4e-34	87.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0001876 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040427.1	4.97e-41	87.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ98688.1	4.97e-41	87.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0001876 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001876.2	IVF0001876.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding