IVF0001854 (gene) Melon (IVF77) v1

Overview


Name	IVF0001854
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr03: 15418589 .. 15418969 (-)
RNA-Seq Expression	IVF0001854
Synteny	IVF0001854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGCAAGAATGCCCTTGACTCAGTTTCCTCGTCCTATGGCAAAAAGCGGTCCCCCGATGGTTTCTTCTCTTTGCTTCGTATTGGTCATGAGTATCTCGATCTTTGGGGCTCGTACTCCGAGGACTTCATTCCACACTGCTGGCATGCTCTCTGACACGTTTAGCCAGGGTATAGGTCGGAAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGCGACCCAAAACAGGCCAAAAGATTGCCAATGCTTCCTACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACAACTGGAAATGCACGTGCAGCGAAGGAAACTGGCCGAGCTTGAGGAGTTTCAATGTTAGTCCCAAGAAAACAGGAGCGAGAATGCCCCGGACTTAA

mRNA sequence

ATGCGAGCAAGAATGCCCTTGACTCAGTTTCCTCGTCCTATGGCAAAAAGCGGTCCCCCGATGGTTTCTTCTCTTTGCTTCGTATTGGTCATGAGTATCTCGATCTTTGGGGCTCGTACTCCGAGGACTTCATTCCACACTGCTGGCATGCTCTCTGACACGTTTAGCCAGGGTATAGGTCGGAAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGCGACCCAAAACAGGCCAAAAGATTGCCAATGCTTCCTACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACAACTGGAAATGCACGTGCAGCGAAGGAAACTGGCCGAGCTTGAGGAGTTTCAATGTTAGTCCCAAGAAAACAGGAGCGAGAATGCCCCGGACTTAA

Coding sequence (CDS)

ATGCGAGCAAGAATGCCCTTGACTCAGTTTCCTCGTCCTATGGCAAAAAGCGGTCCCCCGATGGTTTCTTCTCTTTGCTTCGTATTGGTCATGAGTATCTCGATCTTTGGGGCTCGTACTCCGAGGACTTCATTCCACACTGCTGGCATGCTCTCTGACACGTTTAGCCAGGGTATAGGTCGGAAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGCGACCCAAAACAGGCCAAAAGATTGCCAATGCTTCCTACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACAACTGGAAATGCACGTGCAGCGAAGGAAACTGGCCGAGCTTGAGGAGTTTCAATGTTAGTCCCAAGAAAACAGGAGCGAGAATGCCCCGGACTTAA

Protein sequence

MRARMPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGRKASSLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGARMPRT

Homology

[Close]

BLAST of IVF0001854 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.5e-36
Identity = 85/125 (68.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 2    RARMPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGR 61
            RARMP +QF R  AKS  P VSSLCFVLV+++SIF ARTPRTS HT GML D FS+GIG+
Sbjct: 1535 RARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQ 1594

Query: 62   KASSLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGA 121
            +ASSLEGEL C+PK++KR  MLPTS ERSSG+RN+ KCT  EGN  S R+ +  PKKT A
Sbjct: 1595 EASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLSSRTLSAHPKKTRA 1654

Query: 122  RMPRT 127
            RMPRT
Sbjct: 1655 RMPRT 1659

[Close]

BLAST of IVF0001854 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 15  AKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGRKASSLEGELRCDP 74
           +K+    VSSL F+LV+S+ IFGA TPRTS HT  ML D FSQGIGR+ASSLEGELRCDP
Sbjct: 426 SKTWSQTVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDP 485

Query: 75  KQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGARMPRT 127
           K  KR PML TSGE SSGVRNNWK TCSE N    R+ NV PKKT ARMP+T
Sbjct: 486 KWYKRWPMLQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQT 537

[Close]

BLAST of IVF0001854 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 86/172 (50.00%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 2   RARMPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQ---- 61
           RARMP TQF RP  KS PP VS+LC VLV S+SIFGA TPRTS HT GML DTFS+    
Sbjct: 295 RARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECP 354

Query: 62  --------------------------------------------------GIGRKASSLE 120
                                                             GIGR+ASSLE
Sbjct: 355 RLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLE 414

[Close]

BLAST of IVF0001854 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.2e-28
Identity = 76/122 (62.30%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 5   MPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGRKAS 64
           MP TQF R  AK  P        VLV+S+SIF ART RTS HT+GML   F+QGIGR+AS
Sbjct: 1   MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 65  SLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGARMP 124
           SLEGEL  DPK+ KR PML TSGER SGVRN+WKCTCS  N  S R+  V P KT  RM 
Sbjct: 61  SLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMS 120

Query: 125 RT 127
           RT
Sbjct: 121 RT 122

[Close]

BLAST of IVF0001854 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 49  GMLSDTFSQGIGRKASSLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPS 108
           GML DTFS GIGR+ASSLEGEL CDPK++KR P LPTSGERSSGVRN+WKCTCSEGN  S
Sbjct: 178 GMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLS 237

Query: 109 LRSFNVSPKKTGARMPRT 127
            R+    PKKT A MPRT
Sbjct: 238 SRTSGARPKKTPAGMPRT 255

[Close]

BLAST of IVF0001854 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (417), Expect = 2.81e-44
Identity = 85/125 (68.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 2    RARMPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGR 61
            RARMP +QF R  AKS  P VSSLCFVLV+++SIF ARTPRTS HT GML D FS+GIG+
Sbjct: 1535 RARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQ 1594

Query: 62   KASSLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGA 121
            +ASSLEGEL C+PK++KR  MLPTS ERSSG+RN+ KCT  EGN  S R+ +  PKKT A
Sbjct: 1595 EASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLSSRTLSAHPKKTRA 1654

Query: 122  RMPRT 126
            RMPRT
Sbjct: 1655 RMPRT 1659

[Close]

BLAST of IVF0001854 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (378), Expect = 3.87e-39
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 15  AKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGRKASSLEGELRCDP 74
           +K+    VSSL F+LV+S+ IFGA TPRTS HT  ML D FSQGIGR+ASSLEGELRCDP
Sbjct: 426 SKTWSQTVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDP 485

Query: 75  KQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGARMPRT 126
           K  KR PML TSGE SSGVRNNWK TCSE N    R+ NV PKKT ARMP+T
Sbjct: 486 KWYKRWPMLQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQT 537

[Close]

BLAST of IVF0001854 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 5.13e-39
Identity = 86/172 (50.00%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 2   RARMPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQ---- 61
           RARMP TQF RP  KS PP VS+LC VLV S+SIFGA TPRTS HT GML DTFS+    
Sbjct: 295 RARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECP 354

Query: 62  --------------------------------------------------GIGRKASSLE 119
                                                             GIGR+ASSLE
Sbjct: 355 RLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLE 414

[Close]

BLAST of IVF0001854 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 1.36e-37
Identity = 76/122 (62.30%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 5   MPLTQFPRPMAKSGPPMVSSLCFVLVMSISIFGARTPRTSFHTAGMLSDTFSQGIGRKAS 64
           MP TQF R  AK  P        VLV+S+SIF ART RTS HT+GML   F+QGIGR+AS
Sbjct: 1   MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 65  SLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPSLRSFNVSPKKTGARMP 124
           SLEGEL  DPK+ KR PML TSGER SGVRN+WKCTCS  N  S R+  V P KT  RM 
Sbjct: 61  SLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMS 120

Query: 125 RT 126
           RT
Sbjct: 121 RT 122

[Close]

BLAST of IVF0001854 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 4.02e-31
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 49  GMLSDTFSQGIGRKASSLEGELRCDPKQAKRLPMLPTSGERSSGVRNNWKCTCSEGNWPS 108
           GML DTFS GIGR+ASSLEGEL CDPK++KR P LPTSGERSSGVRN+WKCTCSEGN  S
Sbjct: 178 GMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLS 237

Query: 109 LRSFNVSPKKTGARMPRT 126
            R+    PKKT A MPRT
Sbjct: 238 SRTSGARPKKTPAGMPRT 255

The following BLAST results are available for this feature:

BLAST of IVF0001854 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	2.5e-36	68.00	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3DIF8	1.4e-31	69.64	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5D3DFP2	1.8e-31	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V368	4.2e-28	62.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGB1	1.1e-23	75.64	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]

BLAST of IVF0001854 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	2.81e-44	68.00	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK23424.1	3.87e-39	69.64	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK22521.1	5.13e-39	50.00	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0061317.1	1.36e-37	62.30	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0066117.1	4.02e-31	75.64	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]

BLAST of IVF0001854 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001854.1	IVF0001854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity