IVF0001774 (gene) Melon (IVF77) v1

Overview
NameIVF0001774
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionChromo domain-containing protein
Locationchr09: 17789673 .. 17789954 (-)
RNA-Seq ExpressionIVF0001774
SyntenyIVF0001774
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGAAGAAGAGACGCGACTCGACTTCACAACCTCGGTCGACGGCGCTTGGTTTCGACGACCGACGCTCGGTTTCGACGGACGTCGCGGCTGGGCGAGGCGGCGGGCTCGTAACGGCAGCTGACGGAGCGGCAAAGAATGGTGGCTACGCGAAGCAGCTTGTGGTGGATCGGCTTGGTTTGCTTGCGGCTGACTTCCGACGACCGTACGGCAGGCTTCGAAAACGGCTCGACAGCACGGTGGCTTCAGACGGACGATCGGCGGTAGCGGCTAGGGCTTGA

mRNA sequence

ATGCGGAAGAAGAGACGCGACTCGACTTCACAACCTCGGTCGACGGCGCTTGGTTTCGACGACCGACGCTCGGTTTCGACGGACGTCGCGGCTGGGCGAGGCGGCGGGCTCGTAACGGCAGCTGACGGAGCGGCAAAGAATGGTGGCTACGCGAAGCAGCTTGTGGTGGATCGGCTTGGTTTGCTTGCGGCTGACTTCCGACGACCGTACGGCAGGCTTCGAAAACGGCTCGACAGCACGGTGGCTTCAGACGGACGATCGGCGGTAGCGGCTAGGGCTTGA

Coding sequence (CDS)

ATGCGGAAGAAGAGACGCGACTCGACTTCACAACCTCGGTCGACGGCGCTTGGTTTCGACGACCGACGCTCGGTTTCGACGGACGTCGCGGCTGGGCGAGGCGGCGGGCTCGTAACGGCAGCTGACGGAGCGGCAAAGAATGGTGGCTACGCGAAGCAGCTTGTGGTGGATCGGCTTGGTTTGCTTGCGGCTGACTTCCGACGACCGTACGGCAGGCTTCGAAAACGGCTCGACAGCACGGTGGCTTCAGACGGACGATCGGCGGTAGCGGCTAGGGCTTGA

Protein sequence

MRKKRRDSTSQPRSTALGFDDRRSVSTDVAAGRGGGLVTAADGAAKNGGYAKQLVVDRLGLLAADFRRPYGRLRKRLDSTVASDGRSAVAARA
Homology
BLAST of IVF0001774 vs. ExPASy TrEMBL
Match: A0A5D3CI60 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00140 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 29  VAAGRGGGLVTAADGAAKNGGYAKQLVVDRLGLLAADFRRPYGRLRKRLDST-VASDGR 87
           V AGRGG LVTAADGAA++GGYAK+L+VDRL LLA DFRRPYG LR+RL++  + +DGR
Sbjct: 371 VTAGRGGRLVTAADGAAEDGGYAKRLMVDRLDLLAVDFRRPYGWLRRRLEARWLQTDGR 429

BLAST of IVF0001774 vs. ExPASy TrEMBL
Match: A0A5D3DEV2 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00620 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 31  AGRGGGLVTAADGAAKNGGYAKQLVVDRLGLLAADFRRPYGRLRKRLDSTVASDGRSAVA 90
           AG+   +VT ADGAAK  GYAK+LVVDRLG LAADFRRPYG L++ LD+ VA DGRS   
Sbjct: 183 AGQSSRVVTTADGAAKYEGYAKRLVVDRLGSLAADFRRPYGWLQRWLDNMVALDGRSTAV 242

Query: 91  AR 93
            R
Sbjct: 243 IR 244

BLAST of IVF0001774 vs. NCBI nr
Match: TYK10982.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 2.72e-14
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 29  VAAGRGGGLVTAADGAAKNGGYAKQLVVDRLGLLAADFRRPYGRLRKRLDST-VASDGR 86
           V AGRGG LVTAADGAA++GGYAK+L+VDRL LLA DFRRPYG LR+RL++  + +DGR
Sbjct: 371 VTAGRGGRLVTAADGAAEDGGYAKRLMVDRLDLLAVDFRRPYGWLRRRLEARWLQTDGR 429

BLAST of IVF0001774 vs. NCBI nr
Match: TYK21920.1 (Chromo domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 5.81e-13
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 31  AGRGGGLVTAADGAAKNGGYAKQLVVDRLGLLAADFRRPYGRLRKRLDSTVASDGRS 87
           AG+   +VT ADGAAK  GYAK+LVVDRLG LAADFRRPYG L++ LD+ VA DGRS
Sbjct: 183 AGQSSRVVTTADGAAKYEGYAKRLVVDRLGSLAADFRRPYGWLQRWLDNMVALDGRS 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CI609.2e-1271.19Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G0014... [more]
A0A5D3DEV21.7e-1066.13Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
TYK10982.12.72e-1471.19extensin-3-like [Cucumis melo var. makuwa][more]
TYK21920.15.81e-1370.18Chromo domain-containing protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001774.2IVF0001774.2mRNA