IVF0001730 (gene) Melon (IVF77) v1

Overview


Name	IVF0001730
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr08: 21728572 .. 21728823 (+)
RNA-Seq Expression	IVF0001730
Synteny	IVF0001730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCGTAATGTCATAGGTCGACCAACCATCGATCTAAGTCAGAAAGAAGATAAATATGTTGAAAAAATCCTAGTCAAGCGAGTAAAAAAGGGTCGAAGACCCACAAGAAGGATCCACGAGTACTTGGTAAAGTGGAAGAACCTTCATGTGGAAGAAACTAGTTGGGAACATGTTGAAGACCTAGAAGTCTGGATACAGAAGATCAAAGAGTTCAAACTTCGCCAGTTGATAAAGACATCAACTATTTAA

mRNA sequence

ATGCAGCGTAATGTCATAGGTCGACCAACCATCGATCTAAGTCAGAAAGAAGATAAATATGTTGAAAAAATCCTAGTCAAGCGAGTAAAAAAGGGTCGAAGACCCACAAGAAGGATCCACGAGTACTTGGTAAAGTGGAAGAACCTTCATGTGGAAGAAACTAGTTGGGAACATGTTGAAGACCTAGAAGTCTGGATACAGAAGATCAAAGAGTTCAAACTTCGCCAGTTGATAAAGACATCAACTATTTAA

Coding sequence (CDS)

ATGCAGCGTAATGTCATAGGTCGACCAACCATCGATCTAAGTCAGAAAGAAGATAAATATGTTGAAAAAATCCTAGTCAAGCGAGTAAAAAAGGGTCGAAGACCCACAAGAAGGATCCACGAGTACTTGGTAAAGTGGAAGAACCTTCATGTGGAAGAAACTAGTTGGGAACATGTTGAAGACCTAGAAGTCTGGATACAGAAGATCAAAGAGTTCAAACTTCGCCAGTTGATAAAGACATCAACTATTTAA

Protein sequence

MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

Homology

[Close]

BLAST of IVF0001730 vs. ExPASy TrEMBL
Match: A0A5A7TR40 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00880 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRN++ RP IDLSQKEDK VE+IL KRV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 843 LQRNIVTRPVIDLSQKEDKDVEEILAKRVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 902

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 84
           DLE W QKI++FKLRQL +TSTI
Sbjct: 903 DLEAWKQKIEDFKLRQLTRTSTI 925

[Close]

BLAST of IVF0001730 vs. ExPASy TrEMBL
Match: A0A5D3C1P4 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45522G00010 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRN++ RP IDLSQKEDK VE+IL +RV++GRRPTRRIHEYLVKWKNL VEETSWE VE
Sbjct: 22  LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 81

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 84
           DLE W QKIK+FKLRQL  TSTI
Sbjct: 82  DLEAWKQKIKDFKLRQLTGTSTI 104

[Close]

BLAST of IVF0001730 vs. ExPASy TrEMBL
Match: A0A5D3DZY1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00120 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRN++ RP IDLSQKEDK VE+IL KRV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 193 LQRNIVTRPVIDLSQKEDKDVEEILAKRVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 252

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 84
           DLE W QKI++FKLRQL +TSTI
Sbjct: 253 DLEAWKQKIEDFKLRQLTRTSTI 275

[Close]

BLAST of IVF0001730 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1    MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
            +QRNV+ RPTIDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 1505 LQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 1564

Query: 61   DLEVWIQKIKEFKLRQLIKTSTI 84
            DLE W QKI++FKLRQL  TSTI
Sbjct: 1565 DLEAWKQKIEDFKLRQLTGTSTI 1587

[Close]

BLAST of IVF0001730 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRNV+ RPTIDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 177 LQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 236

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 84
           DLE W QKI++FKLRQL  TSTI
Sbjct: 237 DLEAWKQKIEDFKLRQLTGTSTI 259

[Close]

BLAST of IVF0001730 vs. NCBI nr
Match: TYK04336.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 2.29e-37
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRN++ RP IDLSQKEDK VE+IL +RV++GRRPTRRIHEYLVKWKNL VEETSWE VE
Sbjct: 22  LQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSWERVE 81

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 83
           DLE W QKIK+FKLRQL  TSTI
Sbjct: 82  DLEAWKQKIKDFKLRQLTGTSTI 104

[Close]

BLAST of IVF0001730 vs. NCBI nr
Match: TYK28810.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 2.63e-35
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRN++ RP IDLSQKEDK VE+IL KRV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 193 LQRNIVTRPVIDLSQKEDKDVEEILAKRVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 252

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 83
           DLE W QKI++FKLRQL +TSTI
Sbjct: 253 DLEAWKQKIEDFKLRQLTRTSTI 275

[Close]

BLAST of IVF0001730 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 3.57e-35
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRNV+ RPTIDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 177 LQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 236

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 83
           DLE W QKI++FKLRQL  TSTI
Sbjct: 237 DLEAWKQKIEDFKLRQLTGTSTI 259

[Close]

BLAST of IVF0001730 vs. NCBI nr
Match: RRQ65156.1 (hypothetical protein CQW39_37580 [Streptomyces griseofuscus])

HSP 1 Score: 124 bits (312), Expect = 5.25e-35
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
          +QRNV+ RP IDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 16 LQRNVVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 75

Query: 61 DLEVWIQKIKEFKLRQLIKTSTI 83
          DLE W QKI++FKL QL  TSTI
Sbjct: 76 DLEAWKQKIEDFKLCQLTGTSTI 98

[Close]

BLAST of IVF0001730 vs. NCBI nr
Match: WP_148103103.1 (hypothetical protein, partial [Streptomyces griseofuscus])

HSP 1 Score: 124 bits (312), Expect = 5.74e-35
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1   MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVE 60
           +QRNV+ RP IDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VE
Sbjct: 19  LQRNVVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVE 78

Query: 61  DLEVWIQKIKEFKLRQLIKTSTI 83
           DLE W QKI++FKL QL  TSTI
Sbjct: 79  DLEAWKQKIEDFKLCQLTGTSTI 101

The following BLAST results are available for this feature:

BLAST of IVF0001730 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR40	1.8e-27	77.11	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00880 PE...	[more]
A0A5D3C1P4	1.8e-27	78.31	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Cucumis melo var. ma...	[more]
A0A5D3DZY1	1.8e-27	77.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5D3C4R1	3.1e-27	78.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DBE0	3.1e-27	78.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]

BLAST of IVF0001730 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04336.1	2.29e-37	78.31	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. maku...	[more]
TYK28810.1	2.63e-35	77.11	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19637.1	3.57e-35	78.31	reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta...	[more]
RRQ65156.1	5.25e-35	75.90	hypothetical protein CQW39_37580 [Streptomyces griseofuscus]	[more]
WP_148103103.1	5.74e-35	75.90	hypothetical protein, partial [Streptomyces griseofuscus]	[more]

BLAST of IVF0001730 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 21..73 e-value: 1.8E-10 score: 40.6
None	No IPR available	GENE3D	2.40.50.40		coord: 14..81 e-value: 1.3E-11 score: 46.0
None	No IPR available	CDD	cd00024	CD_CSD	coord: 21..73 e-value: 7.02914E-8 score: 42.4641
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 19..83 score: 12.249801
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 9..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001730.1	IVF0001730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity