IVF0001719 (gene) Melon (IVF77) v1

Overview
NameIVF0001719
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCell wall protein RBR3-like
Locationchr04: 16573056 .. 16573580 (-)
RNA-Seq ExpressionIVF0001719
SyntenyIVF0001719
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTTGATTATTGGTTAAGCAAGATGGTGAATACTCGTCGAGGAAAGTATCAAACTCGTTCAACTCCAGTTGGTTTCGAAGATGTTAGCACCAAAACGAACATGCATGGTGTTCGAATGAGGGGCACCAATTCAAAACTACCCCATCTCGACGTTCCTACCGTCTACCGTCTGAAAGAAGTTACATACCACCTTTCGATCCTTCTGAGGAGTCTTTTGCATGATGATCTTGTTAATTCAAATGCTTTCGAGCATGTTGGCCATCAAAAGTCAAACTTATCTGATATGGACTCAGATGAAAGAGATGATGTACCTCTCGTTCATATTTTGAAGCGTGGGGTTTTTAGCAAAAAATCTCAACCAGATGTTAGTATTCCTGATCCTTCTGCTGCAACTCATTCTTTAGGTGTTTCCTCTGTTTCTCTGCACTTCACGAGTAGCTCTTCTCAGGATGATATCCTCGCTTCGAATGTGCCACAACACTCAAGTGGAAATGTGTCTCAAGGTTCGAACTTCAGATAA

mRNA sequence

ATGGTTCTTGATTATTGGTTAAGCAAGATGGTGAATACTCGTCGAGGAAAGTATCAAACTCGTTCAACTCCAGTTGGTTTCGAAGATGTTAGCACCAAAACGAACATGCATGGTGTTCGAATGAGGGGCACCAATTCAAAACTACCCCATCTCGACGTTCCTACCGTCTACCGTCTGAAAGAAGTTACATACCACCTTTCGATCCTTCTGAGGAGTCTTTTGCATGATGATCTTGTTAATTCAAATGCTTTCGAGCATGTTGGCCATCAAAAGTCAAACTTATCTGATATGGACTCAGATGAAAGAGATGATGTACCTCTCGTTCATATTTTGAAGCGTGGGGTTTTTAGCAAAAAATCTCAACCAGATGTTAGTATTCCTGATCCTTCTGCTGCAACTCATTCTTTAGGTGTTTCCTCTGTTTCTCTGCACTTCACGAGTAGCTCTTCTCAGGATGATATCCTCGCTTCGAATGTGCCACAACACTCAAGTGGAAATGTGTCTCAAGGTTCGAACTTCAGATAA

Coding sequence (CDS)

ATGGTTCTTGATTATTGGTTAAGCAAGATGGTGAATACTCGTCGAGGAAAGTATCAAACTCGTTCAACTCCAGTTGGTTTCGAAGATGTTAGCACCAAAACGAACATGCATGGTGTTCGAATGAGGGGCACCAATTCAAAACTACCCCATCTCGACGTTCCTACCGTCTACCGTCTGAAAGAAGTTACATACCACCTTTCGATCCTTCTGAGGAGTCTTTTGCATGATGATCTTGTTAATTCAAATGCTTTCGAGCATGTTGGCCATCAAAAGTCAAACTTATCTGATATGGACTCAGATGAAAGAGATGATGTACCTCTCGTTCATATTTTGAAGCGTGGGGTTTTTAGCAAAAAATCTCAACCAGATGTTAGTATTCCTGATCCTTCTGCTGCAACTCATTCTTTAGGTGTTTCCTCTGTTTCTCTGCACTTCACGAGTAGCTCTTCTCAGGATGATATCCTCGCTTCGAATGTGCCACAACACTCAAGTGGAAATGTGTCTCAAGGTTCGAACTTCAGATAA

Protein sequence

MVLDYWLSKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQGSNFR
Homology
BLAST of IVF0001719 vs. ExPASy TrEMBL
Match: A0A5A7UT97 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold778G00020 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.1e-29
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 0

Query: 10  MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
           MVNTRR KYQ RST +G ED S++TNMH VR+RG   K      P     K+     S  
Sbjct: 1   MVNTRREKYQVRSTSIGSEDDSSRTNMHDVRIRGYQFKTTPSRRPYRLPSKQNQVSPSDP 60

Query: 70  LRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDP 129
            +  L  D V+S   E+VGH +S+LSDMD ++RD+VPL HILKRGVF K +Q D  +P  
Sbjct: 61  TKDSLFSDPVDSVVPENVGHHESDLSDMDPNKRDNVPLFHILKRGVFGKNTQLDSDVPCA 120

Query: 130 SAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           S+   S     VSLHFTSSSS +DI ASN P HSS N+SQ
Sbjct: 121 SSVVSSPSGHFVSLHFTSSSSNNDIPASNEPHHSSDNLSQ 160

BLAST of IVF0001719 vs. ExPASy TrEMBL
Match: A0A5D3BZR7 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00460 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.9e-29
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 10 MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
          MVNTRRGKYQTRST VGFEDVSTKTNMHGVRMRG NSKLPHLDVPTVYRLKEVTYHL IL
Sbjct: 1  MVNTRRGKYQTRSTSVGFEDVSTKTNMHGVRMRGINSKLPHLDVPTVYRLKEVTYHLPIL 60

Query: 70 LRSLLHDDLV 80
          LRSLLHDDLV
Sbjct: 61 LRSLLHDDLV 70

BLAST of IVF0001719 vs. ExPASy TrEMBL
Match: A0A5D3DW56 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00590 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.2e-26
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQKSN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 253 LHVDPVRSYVPEHVSHQKSNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 312

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           H  GV  VSLH TSSS QDDIL+ NV QHSSGNVSQ
Sbjct: 313 HPSGVPFVSLHSTSSSFQDDILSLNVAQHSSGNVSQ 348

BLAST of IVF0001719 vs. ExPASy TrEMBL
Match: A0A5D3BUG5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001600 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 0

Query: 8   SKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLS 67
           S +VNTRRGKYQ RST VG ED S++ NMHGV              PT            
Sbjct: 112 SSIVNTRRGKYQVRSTSVGSEDDSSRMNMHGVSPPD----------PT------------ 171

Query: 68  ILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIP 127
              +  L  + V+S   ++VGH +SN+SDMDS+E DDVPL+HILK+ VF K +Q D  +P
Sbjct: 172 ---KESLFSNPVDSIVLKNVGHYESNVSDMDSNESDDVPLIHILKQRVFGKSTQLDSGVP 231

Query: 128 DPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQG 171
             S    S    SVSLHF+SSSS++++ ASN+P HSS N SQG
Sbjct: 232 GASNIIPSQSGHSVSLHFSSSSSKNNVPASNIPHHSSDNSSQG 249

BLAST of IVF0001719 vs. ExPASy TrEMBL
Match: A0A5A7UQX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001900 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-25
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQ+SN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 129 LHVDPVRSYVPEHVSHQESNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 188

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           H  GV  VSLH TSS  QDDIL+ NV QHSSGNVSQ
Sbjct: 189 HPSGVPFVSLHSTSSFFQDDILSLNVAQHSSGNVSQ 224

BLAST of IVF0001719 vs. NCBI nr
Match: KAA0056755.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK21011.1 cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 1.77e-36
Identity = 86/162 (53.09%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 10  MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRL--KEVTYHLS 69
           MVNTRR KYQ RST +G ED S++TNMH VR+RG   K      P  YRL  K+     S
Sbjct: 1   MVNTRREKYQVRSTSIGSEDDSSRTNMHDVRIRGYQFKTTPSRRP--YRLPSKQNQVSPS 60

Query: 70  ILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIP 129
              +  L  D V+S   E+VGH +S+LSDMD ++RD+VPL HILKRGVF K +Q D  +P
Sbjct: 61  DPTKDSLFSDPVDSVVPENVGHHESDLSDMDPNKRDNVPLFHILKRGVFGKNTQLDSDVP 120

Query: 130 DPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 169
             S+   S     VSLHFTSSSS +DI ASN P HSS N+SQ
Sbjct: 121 CASSVVSSPSGHFVSLHFTSSSSNNDIPASNEPHHSSDNLSQ 160

BLAST of IVF0001719 vs. NCBI nr
Match: KAA0036711.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK03686.1 cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 2.40e-35
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 10 MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
          MVNTRRGKYQTRST VGFEDVSTKTNMHGVRMRG NSKLPHLDVPTVYRLKEVTYHL IL
Sbjct: 1  MVNTRRGKYQTRSTSVGFEDVSTKTNMHGVRMRGINSKLPHLDVPTVYRLKEVTYHLPIL 60

Query: 70 LRSLLHDDLV 79
          LRSLLHDDLV
Sbjct: 61 LRSLLHDDLV 70

BLAST of IVF0001719 vs. NCBI nr
Match: TYK03313.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 1.41e-31
Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 0

Query: 8   SKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLS 67
           S +VNTRRGKYQ RST VG ED S++ NMHGV              PT            
Sbjct: 112 SSIVNTRRGKYQVRSTSVGSEDDSSRMNMHGVSPPD----------PT------------ 171

Query: 68  ILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIP 127
              +  L  + V+S   ++VGH +SN+SDMDS+E DDVPL+HILK+ VF K +Q D  +P
Sbjct: 172 ---KESLFSNPVDSIVLKNVGHYESNVSDMDSNESDDVPLIHILKQRVFGKSTQLDSGVP 231

Query: 128 DPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQG 170
             S    S    SVSLHF+SSSS++++ ASN+P HSS N SQG
Sbjct: 232 GASNIIPSQSGHSVSLHFSSSSSKNNVPASNIPHHSSDNSSQG 249

BLAST of IVF0001719 vs. NCBI nr
Match: TYK27718.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 9.32e-31
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQKSN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 253 LHVDPVRSYVPEHVSHQKSNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 312

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 169
           H  GV  VSLH TSSS QDDIL+ NV QHSSGNVSQ
Sbjct: 313 HPSGVPFVSLHSTSSSFQDDILSLNVAQHSSGNVSQ 348

BLAST of IVF0001719 vs. NCBI nr
Match: KAA0060681.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 2.55e-30
Identity = 76/163 (46.63%), Postives = 96/163 (58.90%), Query Frame = 0

Query: 8   SKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLS 67
           SK VNTRRGKYQ RST VG ED S++ NMHGV              PT            
Sbjct: 75  SKSVNTRRGKYQVRSTSVGSEDDSSRMNMHGVSPPD----------PT------------ 134

Query: 68  ILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIP 127
              +  L  + V+S   ++VGH +SN+SDMDS+E DDVPL+HILK+ VF K +Q D  +P
Sbjct: 135 ---KESLFPNPVDSIVLKNVGHYESNVSDMDSNESDDVPLIHILKQRVFGKNTQLDSGVP 194

Query: 128 DPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQG 170
             S    S    SVSLH +SSSS++++ ASN+P HSS N  QG
Sbjct: 195 GASNIIPSQSGHSVSLHSSSSSSKNNVPASNIPHHSSDNFFQG 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UT974.1e-2951.88Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3BZR76.9e-2995.71Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3DW563.2e-2672.92Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3BUG51.6e-2547.24Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7UQX64.6e-2570.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0056755.11.77e-3653.09cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK21011.1 cell wall pro... [more]
KAA0036711.12.40e-3595.71cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK03686.1 cell wall pro... [more]
TYK03313.11.41e-3147.24putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYK27718.19.32e-3172.92putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0060681.12.55e-3046.63F5J5.1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001719.1IVF0001719.1mRNA