IVF0001653 (gene) Melon (IVF77) v1

Overview
NameIVF0001653
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 11368858 .. 11369100 (+)
RNA-Seq ExpressionIVF0001653
SyntenyIVF0001653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATACTACCCTGTAAAAGTTCAATGTCGCATAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGAGAGATGACAAATTTTGATATAGAAGACGACATAGATGAGGTTGATTCCACCCACGCGACTACTGCAGCCGATGACATACATTACATAGAGATGTCCAATGAGTGGACTCAGTGGAGGGACGACCTTGCTAAAGAAATGTTTAGTGATTGGGAGTTGCCTAACCAGTAG

mRNA sequence

ATGTCATACTACCCTGTAAAAGTTCAATGTCGCATAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGAGAGATGACAAATTTTGATATAGAAGACGACATAGATGAGGTTGATTCCACCCACGCGACTACTGCAGCCGATGACATACATTACATAGAGATGTCCAATGAGTGGACTCAGTGGAGGGACGACCTTGCTAAAGAAATGTTTAGTGATTGGGAGTTGCCTAACCAGTAG

Coding sequence (CDS)

ATGTCATACTACCCTGTAAAAGTTCAATGTCGCATAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGAGAGATGACAAATTTTGATATAGAAGACGACATAGATGAGGTTGATTCCACCCACGCGACTACTGCAGCCGATGACATACATTACATAGAGATGTCCAATGAGTGGACTCAGTGGAGGGACGACCTTGCTAAAGAAATGTTTAGTGATTGGGAGTTGCCTAACCAGTAG

Protein sequence

MSYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWTQWRDDLAKEMFSDWELPNQ
Homology
BLAST of IVF0001653 vs. ExPASy TrEMBL
Match: A0A5D3DE97 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00510 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR ILACCLLHNLINREMTNFDIED+IDEVDSTHATTAADDIHYIE SNEWT
Sbjct: 147 SYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWT 206

Query: 62  QWRDDLAKEMFSDWELPNQ 81
           QWRDDLA+EMF DWEL NQ
Sbjct: 207 QWRDDLAEEMFIDWELHNQ 225

BLAST of IVF0001653 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-34
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR ILACCLLHNLINREMTNFDIED+IDEVDSTHATT ADDIHYIE SNEW+
Sbjct: 136 SYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWS 195

Query: 62  QWRDDLAKEMFSDWELPNQ 81
           QWRDDLA+EMFSDWEL NQ
Sbjct: 196 QWRDDLAEEMFSDWELRNQ 214

BLAST of IVF0001653 vs. ExPASy TrEMBL
Match: A0A5A7SYE7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001260 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.3e-34
Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR IL CCLLHNLINREMTNFDI+D+IDEVDSTHATTAADDIHYIEMSNEW+
Sbjct: 28  SYYPVEVQCRTILTCCLLHNLINREMTNFDIQDNIDEVDSTHATTAADDIHYIEMSNEWS 87

Query: 62  QWRDDLAKEMFSDWELPNQ 81
           QWRDDLA+EMFS+WEL NQ
Sbjct: 88  QWRDDLAEEMFSEWELRNQ 106

BLAST of IVF0001653 vs. ExPASy TrEMBL
Match: A0A5A7VLF4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001080 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.6e-34
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR IL CCLLHNLINR+MTNFDIEDDIDEVDSTHATTAADDIHYIE SNEW+
Sbjct: 28  SYYPVEVQCRTILVCCLLHNLINRKMTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWS 87

Query: 62  QWRDDLAKEMFSDWELPNQ 81
           +WRDDLA+EMFSDWEL NQ
Sbjct: 88  RWRDDLAEEMFSDWELSNQ 106

BLAST of IVF0001653 vs. ExPASy TrEMBL
Match: A0A5D3CKZ1 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00740 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.6e-34
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR IL CCLLHNLINR+MTNFDIEDDIDEVDSTHATTAADDIHYIE SNEW+
Sbjct: 28  SYYPVEVQCRTILVCCLLHNLINRKMTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWS 87

Query: 62  QWRDDLAKEMFSDWELPNQ 81
           +WRDDLA+EMFSDWEL NQ
Sbjct: 88  RWRDDLAEEMFSDWELSNQ 106

BLAST of IVF0001653 vs. NCBI nr
Match: KAA0035628.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK30914.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (387), Expect = 2.17e-46
Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR IL CCLLHNLINREMTNFDI+D+IDEVDSTHATTAADDIHYIEMSNEW+
Sbjct: 28  SYYPVEVQCRTILTCCLLHNLINREMTNFDIQDNIDEVDSTHATTAADDIHYIEMSNEWS 87

Query: 62  QWRDDLAKEMFSDWELPNQ 80
           QWRDDLA+EMFS+WEL NQ
Sbjct: 88  QWRDDLAEEMFSEWELRNQ 106

BLAST of IVF0001653 vs. NCBI nr
Match: KAA0067286.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 3.08e-46
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR IL CCLLHNLINR+MTNFDIEDDIDEVDSTHATTAADDIHYIE SNEW+
Sbjct: 28  SYYPVEVQCRTILVCCLLHNLINRKMTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWS 87

Query: 62  QWRDDLAKEMFSDWELPNQ 80
           +WRDDLA+EMFSDWEL NQ
Sbjct: 88  RWRDDLAEEMFSDWELSNQ 106

BLAST of IVF0001653 vs. NCBI nr
Match: TYK10899.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 3.08e-46
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR IL CCLLHNLINR+MTNFDIEDDIDEVDSTHATTAADDIHYIE SNEW+
Sbjct: 28  SYYPVEVQCRTILVCCLLHNLINRKMTNFDIEDDIDEVDSTHATTAADDIHYIETSNEWS 87

Query: 62  QWRDDLAKEMFSDWELPNQ 80
           +WRDDLA+EMFSDWEL NQ
Sbjct: 88  RWRDDLAEEMFSDWELSNQ 106

BLAST of IVF0001653 vs. NCBI nr
Match: KAA0032957.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK22011.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 2.80e-45
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR ILACCLLHNLINREMTNFDIED+IDEVDSTHATTAADDIHYIE SNEWT
Sbjct: 147 SYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWT 206

Query: 62  QWRDDLAKEMFSDWELPNQ 80
           QWRDDLA+EMF DWEL NQ
Sbjct: 207 QWRDDLAEEMFIDWELHNQ 225

BLAST of IVF0001653 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (388), Expect = 4.09e-45
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 2   SYYPVKVQCRIILACCLLHNLINREMTNFDIEDDIDEVDSTHATTAADDIHYIEMSNEWT 61
           SYYPV+VQCR ILACCLLHNLINREMTNFDIED+IDEVDSTHATT ADDIHYIE SNEW+
Sbjct: 136 SYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWS 195

Query: 62  QWRDDLAKEMFSDWELPNQ 80
           QWRDDLA+EMFSDWEL NQ
Sbjct: 196 QWRDDLAEEMFSDWELRNQ 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DE971.9e-3491.14Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3BL483.3e-3489.87Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SYE74.3e-3488.61Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7VLF45.6e-3488.61Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3CKZ15.6e-3488.61Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
KAA0035628.12.17e-4688.61putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK30914.1 putative nucleas... [more]
KAA0067286.13.08e-4688.61putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
TYK10899.13.08e-4688.61putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0032957.12.80e-4591.14putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK22011.1 putative nucleas... [more]
TYJ99699.14.09e-4589.87putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001653.1IVF0001653.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding