IVF0001621 (gene) Melon (IVF77) v1

Overview


Name	IVF0001621
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr02: 13062730 .. 13063081 (-)
RNA-Seq Expression	IVF0001621
Synteny	IVF0001621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTGAGGATGAGGTGTTAGTTGGGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGATAATGGAACATTCAAACCGGGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTTCTGGAAGCAACATACAAGTGACTCCAAAATTAGAGTCGAGAGAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAGGTAAGAAGATGA

mRNA sequence

ATGGCATCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTGAGGATGAGGTGTTAGTTGGGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGATAATGGAACATTCAAACCGGGATATTTGGTACAAAGTCGAGAGAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAGGTAAGAAGATGA

Coding sequence (CDS)

ATGGCATCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTGAGGATGAGGTGTTAGTTGGGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGATAATGGAACATTCAAACCGGGATATTTGGTACAAAGTCGAGAGAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAGGTAAGAAGATGA

Protein sequence

MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR

Homology

[Close]

BLAST of IVF0001621 vs. ExPASy TrEMBL
Match: A0A5D3C542 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00540 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 84/93 (90.32%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTA 60
           MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL         KQYTA
Sbjct: 253 MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL---------KQYTA 312

Query: 61  IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 94
           IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
Sbjct: 313 IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 336

[Close]

BLAST of IVF0001621 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 89/117 (76.07%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ------------ 60
           MASTNSKATKHRWTTI DEVLV CLLQLVEEGGWRADNGTFK GYLVQ            
Sbjct: 1   MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  ---------SREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR 97
                    SR KILKKQY AIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK  R
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKTAR 116

[Close]

BLAST of IVF0001621 vs. ExPASy TrEMBL
Match: A0A1S3CI24 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTA 60
          MAST SKATKHRWTTIEDE LV CLLQLVEEGGWRADNGTFKPGYL         KQYTA
Sbjct: 1  MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYL---------KQYTA 60

Query: 61 IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 94
          IAEMMG ACSGFGWNEERKCIEAEKSVFDDWVK
Sbjct: 61 IAEMMGQACSGFGWNEERKCIEAEKSVFDDWVK 84

[Close]

BLAST of IVF0001621 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ------------ 60
           MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ            
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  ---------SREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 94
                    SR K LKKQYTAIA+MMGPACS FGWNEERKCIEAEKSVFDDWVK
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 114

[Close]

BLAST of IVF0001621 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ------------ 60
           MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ            
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  ---------SREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 94
                    SR K LKKQYTAIA+MMGPACS FGWNEERKCIEAEKSVFDDWVK
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

[Close]

BLAST of IVF0001621 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 1.90e-50
Identity = 89/117 (76.07%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ------------ 60
           MASTNSKATKHRWTTI DEVLV CLLQLVEEGGWRADNGTFK GYLVQ            
Sbjct: 1   MASTNSKATKHRWTTI-DEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  ---------SREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR 96
                    SR KILKKQY AIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK  R
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKTAR 116

[Close]

BLAST of IVF0001621 vs. NCBI nr
Match: TYK06362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 2.30e-50
Identity = 84/93 (90.32%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTA 60
           MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL         KQYTA
Sbjct: 253 MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL---------KQYTA 312

Query: 61  IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 93
           IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
Sbjct: 313 IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 336

[Close]

BLAST of IVF0001621 vs. NCBI nr
Match: XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 164 bits (414), Expect = 6.15e-49
Identity = 80/93 (86.02%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTA 60
          MAST SKATKHRWTTIEDE LV CLLQLVEEGGWRADNGTFKPGYL         KQYTA
Sbjct: 1  MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYL---------KQYTA 60

Query: 61 IAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 93
          IAEMMG ACSGFGWNEERKCIEAEKSVFDDWVK
Sbjct: 61 IAEMMGQACSGFGWNEERKCIEAEKSVFDDWVK 84

[Close]

BLAST of IVF0001621 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 1.02e-47
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ------------ 60
           MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ            
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  ---------SREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 93
                    SR K LKKQYTAIA+MMGPACS FGWNEERKCIEAEKSVFDDWVK
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 114

[Close]

BLAST of IVF0001621 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 162 bits (409), Expect = 2.49e-47
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 1   MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ------------ 60
           MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ            
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  ---------SREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK 93
                    SR K LKKQYTAIA+MMGPACS FGWNEERKCIEAEKSVFDDWVK
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

[Close]

BLAST of IVF0001621 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 7.2e-04
Identity = 16/51 (31.37%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 46  LVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR 97
           ++++R K L++Q+ AI  ++     GF W+ ER+ + A+ +V+ D++K  R
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHR 284

[Close]

BLAST of IVF0001621 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 40.8 bits (94), Expect = 7.2e-04
Identity = 16/51 (31.37%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 46  LVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR 97
           ++++R K L++Q+ AI  ++     GF W+ ER+ + A+ +V+ D++K  R
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHR 284

The following BLAST results are available for this feature:

BLAST of IVF0001621 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C542	2.0e-41	90.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U7F7	6.3e-40	76.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CI24	3.5e-38	86.02	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 P...	[more]
A0A5D3BC95	1.0e-37	71.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	1.0e-37	71.93	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]

BLAST of IVF0001621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050106.1	1.90e-50	76.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06362.1	2.30e-50	90.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008462939.1	6.15e-49	86.02	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
TYJ96933.1	1.02e-47	71.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	2.49e-47	71.93	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]

BLAST of IVF0001621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	7.2e-04	31.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	7.2e-04	31.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..94
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001621.2	IVF0001621.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding