IVF0001600 (gene) Melon (IVF77) v1

Overview


Name	IVF0001600
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Membrane-associated 30 kDa protein
Location	chr07: 22780743 .. 22781661 (-)
RNA-Seq Expression	IVF0001600
Synteny	IVF0001600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAGTCACCCAACAAACACAGCAGTACAATACAATACCCATTGATTCACACACAAACAAGATGAAGATTCAACACTATGGGGCGTTTCTATAACAATATTTGGTTCATCAAGCAAGAAGAAGAAAGTACCTGGAAATAGCCAACAGTCAAACCAACAGCCTCAGCATCAAGCAATTACAGTCTCAACTCCAAGCGAAATAGCAAGAACAAGACCAAGTAAAATTCAAAATTCCTTTTTCAACACGTAACCTACTCTCTCTACTTCTCTACTTCTCAACAACACCCATTCAAACACCAACCCATTTGCATTTTACCTATAAATTAAGCTTCAACCCCTCTTAGCCATTTCATCAAACACCTTCTCTTCATTTCACCCTTAACTTCTCTCAGACACATCCTCAAACACCTTCTCTTCATTTCACTGTTTAGTTCTTTACACTTCATTTTTCTCAGTCATATCATCAAACAACTTCCTTTGTTCCACCCTTTGCTTCTCTTAACCGCAATTTCTCCCAGACGCATCGTCGAACACATTACCTTCGTTCCAGATTCCACTCCAACCCATAGACTTCTAAAATGAATTACGGAAAATTGGTTGTCCTTTCAATCGTCCTCTTTGTCGCTTTGGCGTTGCTCAGCAACAGCGCCGCCGTGGACGCCGCCAGAGTGGTGCCCGGAGACTTCGCGAGCGTCAATCACTTAGAGATGTACCCGTCGGCGTACGAGCAGGCGAAGCATACGGTCTCGTGTTGGCTTGGCCGCTTATCGTCCGGCCCCAGCCCCAAAGGTCCTGGCCACTGATTTCTCCGCCGCCGGCCCACCGTCCACCGAAACAGACCTTCGCCGAGGAAGCTCATTCTTTTTTCCTTCTTTTTTAATTCTTTTATACGTAGATGACACGGACTGGCCGAAGACCG

mRNA sequence

CCAAAGTCACCCAACAAACACAGCAGTACAATACAATACCCATTGATTCACACACAAACAAGATGAAGATTCAACACTATGGGGCGTTTCTATAACAATATTTGGTTCATCAAGCAAGAAGAAGAAAGTACCTGGAAATAGCCAACAGTCAAACCAACAGCCTCAGCATCAAGCAATTACAGTCTCAACTCCAAGCGAAATAGCAAGAACAAGACCAAGTAAAATTCAAAATTCCTTTTTCAACACGTAACCTACTCTCTCTACTTCTCTACTTCTCAACAACACCCATTCAAACACCAACCCATTTGCATTTTACCTATAAATTAAGCTTCAACCCCTCTTAGCCATTTCATCAAACACCTTCTCTTCATTTCACCCTTAACTTCTCTCAGACACATCCTCAAACACCTTCTCTTCATTTCACTGTTTAGTTCTTTACACTTCATTTTTCTCAGTCATATCATCAAACAACTTCCTTTGTTCCACCCTTTGCTTCTCTTAACCGCAATTTCTCCCAGACGCATCGTCGAACACATTACCTTCGTTCCAGATTCCACTCCAACCCATAGACTTCTAAAATGAATTACGGAAAATTGGTTGTCCTTTCAATCGTCCTCTTTGTCGCTTTGGCGTTGCTCAGCAACAGCGCCGCCGTGGACGCCGCCAGAGTGGTGCCCGGAGACTTCGCGAGCGTCAATCACTTAGAGATGTACCCGTCGGCGTACGAGCAGGCGAAGCATACGGTCTCGTGTTGGCTTGGCCGCTTATCGTCCGGCCCCAGCCCCAAAGGTCCTGGCCACTGATTTCTCCGCCGCCGGCCCACCGTCCACCGAAACAGACCTTCGCCGAGGAAGCTCATTCTTTTTTCCTTCTTTTTTAATTCTTTTATACGTAGATGACACGGACTGGCCGAAGACCG

Coding sequence (CDS)

ATGAATTACGGAAAATTGGTTGTCCTTTCAATCGTCCTCTTTGTCGCTTTGGCGTTGCTCAGCAACAGCGCCGCCGTGGACGCCGCCAGAGTGGTGCCCGGAGACTTCGCGAGCGTCAATCACTTAGAGATGTACCCGTCGGCGTACGAGCAGGCGAAGCATACGGTCTCGTGTTGGCTTGGCCGCTTATCGTCCGGCCCCAGCCCCAAAGGTCCTGGCCACTGA

Protein sequence

MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWLGRLSSGPSPKGPGH

Homology

[Close]

BLAST of IVF0001600 vs. ExPASy TrEMBL
Match: A0A0A0KU27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011070 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN+GKL VL IVL VAL LLSNS+ VDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL
Sbjct: 1  MNFGKLSVLLIVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
          GRLSSGPSPKGPGH
Sbjct: 61 GRLSSGPSPKGPGH 74

[Close]

BLAST of IVF0001600 vs. ExPASy TrEMBL
Match: A0A5C7IW37 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001325 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.2e-15
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN   L  L IVL +++A+LS+   V+A RV+P DFAS NHLE Y S YE+AK T+ CWL
Sbjct: 1  MNARNLGTLLIVLVISVAILSH-VGVEATRVLPEDFASENHLETYSSVYEKAKTTMGCWL 60

Query: 61 GRLSSGPSPKGPGH 75
          GRL+SGPSPKGPGH
Sbjct: 61 GRLASGPSPKGPGH 73

[Close]

BLAST of IVF0001600 vs. ExPASy TrEMBL
Match: A0A2P2J3U6 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          M++ K+  L +V  ++LA+LS    V+AAR +P DFA   HLE Y S YE+AK+T++CWL
Sbjct: 1  MSFQKVATLFLVFVISLAILS-QVKVEAARALPEDFAGAAHLETYSSVYEKAKNTMACWL 60

Query: 61 GRLSSGPSPKGPGH 75
          GRL+SGPSPKGPGH
Sbjct: 61 GRLASGPSPKGPGH 73

[Close]

BLAST of IVF0001600 vs. ExPASy TrEMBL
Match: A0A2P5X272 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G152700v1 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN  KL  L I+  +++A+LS+   V+A RV+  DFA  NHLE Y S YE+AK T+SCWL
Sbjct: 1  MNSRKLNTLMIIFVISMAILSH-VGVEATRVIAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
           RL+SGPSP+GPGH
Sbjct: 61 ERLASGPSPRGPGH 73

[Close]

BLAST of IVF0001600 vs. ExPASy TrEMBL
Match: A0A5D2NU11 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G169800v1 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN  KL  L I+  +++A+LS+   V+A RV+  DFA  NHLE Y S YE+AK T+SCWL
Sbjct: 1  MNSRKLNTLMIIFVISMAILSH-VGVEATRVIAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 61 GRLSSGPSPKGPGH 75
           RL+SGPSP+GPGH
Sbjct: 61 ERLASGPSPRGPGH 73

[Close]

BLAST of IVF0001600 vs. NCBI nr
Match: KGN53012.2 (hypothetical protein Csa_023800, partial [Cucumis sativus])

HSP 1 Score: 133 bits (335), Expect = 1.88e-38
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
           MN+GKL VL IVL VAL LLSNS+ VDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL
Sbjct: 42  MNFGKLSVLLIVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 101

Query: 61  GRLSSGPSPKGPGH 74
           GRLSSGPSPKGPGH
Sbjct: 102 GRLSSGPSPKGPGH 115

[Close]

BLAST of IVF0001600 vs. NCBI nr
Match: KAG6582005.1 (Membrane-associated 30 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118 bits (296), Expect = 2.53e-30
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
           MN+GKL    ++L V +A LSNSAAVDAARVVPGDF+SV++LEMYP+AYEQAK+TVSCWL
Sbjct: 242 MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 301

Query: 61  GRLSSGPSPKGPGH 74
           GRLSSGPSPKGPGH
Sbjct: 302 GRLSSGPSPKGPGH 315

[Close]

BLAST of IVF0001600 vs. NCBI nr
Match: KAG6597679.1 (hypothetical protein SDJN03_10859, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (282), Expect = 3.44e-30
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN+ KL V+ ++L VA+A LSNS AVDAAR+VPGDFAS NHLEMYPSAYE AK+TVSCWL
Sbjct: 1  MNFRKLGVVLMILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWL 60

Query: 61 GRLSSGPSPKGPGH 74
          GRLSSGPSPKG  H
Sbjct: 61 GRLSSGPSPKGFHH 74

[Close]

BLAST of IVF0001600 vs. NCBI nr
Match: TXG72746.1 (hypothetical protein EZV62_001325 [Acer yangbiense])

HSP 1 Score: 88.6 bits (218), Expect = 3.81e-21
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN   L  L IVL +++A+LS+   V+A RV+P DFAS NHLE Y S YE+AK T+ CWL
Sbjct: 1  MNARNLGTLLIVLVISVAILSH-VGVEATRVLPEDFASENHLETYSSVYEKAKTTMGCWL 60

Query: 61 GRLSSGPSPKGPGH 74
          GRL+SGPSPKGPGH
Sbjct: 61 GRLASGPSPKGPGH 73

[Close]

BLAST of IVF0001600 vs. NCBI nr
Match: KAB2062449.1 (hypothetical protein ES319_A10G152700v1 [Gossypium barbadense] >KAG4180068.1 hypothetical protein ERO13_A10G141900v2 [Gossypium hirsutum] >TYG99125.1 hypothetical protein ES288_A10G170500v1 [Gossypium darwinii] >TYI06605.1 hypothetical protein ES332_A10G169800v1 [Gossypium tomentosum] >TYJ15045.1 hypothetical protein E1A91_A10G157900v1 [Gossypium mustelinum])

HSP 1 Score: 84.0 bits (206), Expect = 2.57e-19
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MNYGKLVVLSIVLFVALALLSNSAAVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60
          MN  KL  L I+  +++A+LS+   V+A RV+  DFA  NHLE Y S YE+AK T+SCWL
Sbjct: 1  MNSRKLNTLMIIFVISMAILSH-VGVEATRVIAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 61 GRLSSGPSPKGPGH 74
           RL+SGPSP+GPGH
Sbjct: 61 ERLASGPSPRGPGH 73

The following BLAST results are available for this feature:

BLAST of IVF0001600 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU27	2.5e-28	90.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011070 PE=4 SV=1	[more]
A0A5C7IW37	9.2e-15	62.16	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001325 PE=4 SV=1	[more]
A0A2P2J3U6	4.6e-14	56.76	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A2P5X272	2.3e-13	56.76	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G152700v1 PE...	[more]
A0A5D2NU11	2.3e-13	56.76	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G169800v1 P...	[more]

BLAST of IVF0001600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53012.2	1.88e-38	90.54	hypothetical protein Csa_023800, partial [Cucumis sativus]	[more]
KAG6582005.1	2.53e-30	78.38	Membrane-associated 30 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
KAG6597679.1	3.44e-30	77.03	hypothetical protein SDJN03_10859, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TXG72746.1	3.81e-21	62.16	hypothetical protein EZV62_001325 [Acer yangbiense]	[more]
KAB2062449.1	2.57e-19	56.76	hypothetical protein ES319_A10G152700v1 [Gossypium barbadense] >KAG4180068.1 hyp...	[more]

BLAST of IVF0001600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040273	PAMP-induced secreted peptide 1	PANTHER	PTHR37245	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..74
None	No IPR available	PANTHER	PTHR37245:SF4	PAMP-INDUCED SECRETED PEPTIDE 1	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001600.1	IVF0001600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0016020	membrane