IVF0001590 (gene) Melon (IVF77) v1

Overview
NameIVF0001590
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionComplex1_LYR domain-containing protein
Locationchr05: 14007491 .. 14007926 (-)
RNA-Seq ExpressionIVF0001590
SyntenyIVF0001590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAGAAGCCTTGCAGGTAGCTAAGGCCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTGAGGGATAAATCCATACTTTCAAAACCCCACTTTGTTCAACAGGAAATCAAACTTGCTCGGCATTACACATTTCTACTTAACAGTATGCACCATCAAAAGGCAATAAGACTTCACTCTCAGCTCAGATCACGAAGAAACAAACTTTTCTTTCTTCCTCATTTGATCTTGTTTACAATTGTAATTGACATGGGCTATGATGCAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGTTCAGATGAAATGAAGCGAATATTGGGGAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCTGAGGTTTATCAAACCTGA

mRNA sequence

ATGAATTCAGAAGCCTTGCAGGTAGCTAAGGCCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTGAGGGATAAATCCATACTTTCAAAACCCCACTTTGTTCAACAGGAAATCAAACTTGCTCGGCATTACACATTTCTACTTAACAGTATGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGTTCAGATGAAATGAAGCGAATATTGGGGAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCTGAGGTTTATCAAACCTGA

Coding sequence (CDS)

ATGAATTCAGAAGCCTTGCAGGTAGCTAAGGCCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTGAGGGATAAATCCATACTTTCAAAACCCCACTTTGTTCAACAGGAAATCAAACTTGCTCGGCATTACACATTTCTACTTAACAGTATGCACCATCAAAAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGTTCAGATGAAATGAAGCGAATATTGGGGAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCTGAGGTTTATCAAACCTGA

Protein sequence

MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLARHYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQT
Homology
BLAST of IVF0001590 vs. ExPASy TrEMBL
Match: A0A0A0L9E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVKKH+GKEESKKHFVDYVAQK RDKSILSKPH +QQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 110
            YTFLLNS+HHQKDLLFSYNIAVDRSDEMKR+LGKSAASVGLSLPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQ 109

BLAST of IVF0001590 vs. ExPASy TrEMBL
Match: A0A6J1EY92 (uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC111439884 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVKKHIGKEE+KKHFVDYVAQK R+KS LSKPH VQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 110
            YTFLLNS+HHQKDLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of IVF0001590 vs. ExPASy TrEMBL
Match: A0A6J1HS51 (uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.4e-45
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVK HIGKEE+KKHFVDYVAQK R+KS LSKPH VQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 110
            YTFLLNS+HHQKDLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of IVF0001590 vs. ExPASy TrEMBL
Match: A0A5D3BQE5 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00940 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-42
Identity = 98/107 (91.59%), Postives = 99/107 (92.52%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQK RDKSILSKPH VQQEIKLAR
Sbjct: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEV 108
            YTFLLNS     DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE+
Sbjct: 61  DYTFLLNS-----DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEI 102

BLAST of IVF0001590 vs. ExPASy TrEMBL
Match: A0A6J1C0V5 (uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006395 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 87/109 (79.82%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           M+SEALQVA+ YR+LLKAVK HIGKEESKKHFVDYVAQK R++S LS+PH +QQ+IKLA 
Sbjct: 1   MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLAH 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 110
            Y  LLNS+HHQKDLLFSYNIA+DRS+EMKRILGKSAASVGL LPE YQ
Sbjct: 61  DYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQ 109

BLAST of IVF0001590 vs. NCBI nr
Match: XP_004144434.1 (uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharacterized protein LOC101204721 [Cucumis sativus] >KGN58453.1 hypothetical protein Csa_001238 [Cucumis sativus])

HSP 1 Score: 198 bits (504), Expect = 1.22e-63
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVKKH+GKEESKKHFVDYVAQK RDKSILSKPH +QQEIKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 109
            YTFLLNS+HHQKDLLFSYNIAVDRSDEMKR+LGKSAASVGLSLPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQ 109

BLAST of IVF0001590 vs. NCBI nr
Match: XP_022933120.1 (uncharacterized protein LOC111439884 [Cucurbita moschata] >XP_022933121.1 uncharacterized protein LOC111439884 [Cucurbita moschata])

HSP 1 Score: 191 bits (486), Expect = 6.77e-61
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVKKHIGKEE+KKHFVDYVAQK R+KS LSKPH VQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 109
            YTFLLNS+HHQKDLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of IVF0001590 vs. NCBI nr
Match: XP_022967927.1 (uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharacterized protein LOC111467294 [Cucurbita maxima] >KAG6603158.1 hypothetical protein SDJN03_03767, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (481), Expect = 3.92e-60
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVK HIGKEE+KKHFVDYVAQK R+KS LSKPH VQQ+IKLAR
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 109
            YTFLLNS+HHQKDLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of IVF0001590 vs. NCBI nr
Match: XP_038889144.1 (uncharacterized protein LOC120079034 [Benincasa hispida])

HSP 1 Score: 188 bits (478), Expect = 1.12e-59
Identity = 98/109 (89.91%), Postives = 101/109 (92.66%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEALQVAK YRQLLKAVK HIGKEESKKHFVDYVAQK RDK+ILSKPH VQQEIKLA 
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEESKKHFVDYVAQKFRDKTILSKPHSVQQEIKLAL 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 109
            YTFLLNS+HHQKDLLFSYNIAVDRS+EMKRILGKSAASVGL LPE YQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSEEMKRILGKSAASVGLKLPEPYQ 109

BLAST of IVF0001590 vs. NCBI nr
Match: XP_023544932.1 (uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo] >XP_023544933.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (467), Expect = 5.35e-58
Identity = 95/109 (87.16%), Postives = 100/109 (91.74%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           MNSEA QVAK YRQLLKAVK HIGKEE+KKHFVDYVAQK R+ S +SKPH VQQ+IKLAR
Sbjct: 1   MNSEASQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFRETSTVSKPHSVQQKIKLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 109
            YTFLLNS+HHQKDLLFSYNIAVDRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of IVF0001590 vs. TAIR 10
Match: AT5G51960.1 (CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.0 bits (310), Expect = 7.4e-29
Identity = 64/109 (58.72%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFVQQEIKLAR 60
           M+ E +  A+ YR LLKAV KH+GKE+ K HF+D+V Q+ R  +         ++I LAR
Sbjct: 1   MSGEVVLAARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFRKNA-------NSEKINLAR 60

Query: 61  HYTFLLNSMHHQKDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 110
           +YT+LLNS+H  KDLLFSYNIAVDR++EMKR+L KSAASVGL LPEVY+
Sbjct: 61  NYTYLLNSIHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYE 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9E21.6e-4792.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1[more]
A0A6J1EY922.0e-4589.91uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC1114398... [more]
A0A6J1HS517.4e-4588.99uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294... [more]
A0A5D3BQE55.9e-4291.59Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1C0V51.6e-3979.82uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
Match NameE-valueIdentityDescription
XP_004144434.11.22e-6392.66uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharact... [more]
XP_022933120.16.77e-6189.91uncharacterized protein LOC111439884 [Cucurbita moschata] >XP_022933121.1 unchar... [more]
XP_022967927.13.92e-6088.99uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharac... [more]
XP_038889144.11.12e-5989.91uncharacterized protein LOC120079034 [Benincasa hispida][more]
XP_023544932.15.35e-5887.16uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo] >XP_023544933.... [more]
Match NameE-valueIdentityDescription
AT5G51960.17.4e-2958.72CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 B... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13233Complex1_LYR_2coord: 9..102
e-value: 1.2E-6
score: 29.2
NoneNo IPR availablePANTHERPTHR35763COMPLEX 1 LYR-LIKE PROTEINcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001590.2IVF0001590.2mRNA