IVF0001563 (gene) Melon (IVF77) v1

Overview
NameIVF0001563
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr01: 22613065 .. 22613345 (-)
RNA-Seq ExpressionIVF0001563
SyntenyIVF0001563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGAGAGTAAAGAGAGCTCCCGACGCCACTAGTGATTCGTCGGGAATGGTGTTGAGAGTAAGGGGAGCTTCCAACATTTTCATGCTGCTTCAGGAGTTCTCATATAAAAAAGATGTTTCAGTTCTATGAAACACATAACCAAAACGAAAGAGAAAGAGGAAGATGAGAGTTTGGTCGGTGAAACAAAGAGAGGAGAAAATATCAGTCGTTGTCGTCGTGAGCCTGTCGTCGTGCCTCTCCCCCCATCTACCACCTCACATCTCTTTTTGAGGTAA

mRNA sequence

ATGGCGTCGAGAGTAAAGAGAGCTCCCGACGCCACTAGTGATTCGTCGGGAATGGTGTTGAGAGTAAGGGGAGCTTCCAACATTTTCATGCTGCTTCAGGAGTTCTCATATAAAAAAGATGTTTCAAAAGAGGAAGATGAGAGTTTGGTCGGTGAAACAAAGAGAGGAGAAAATATCAGTCGTTGTCGTCGTGAGCCTGTCGTCGTGCCTCTCCCCCCATCTACCACCTCACATCTCTTTTTGAGGTAA

Coding sequence (CDS)

ATGGCGTCGAGAGTAAAGAGAGCTCCCGACGCCACTAGTGATTCGTCGGGAATGGTGTTGAGAGTAAGGGGAGCTTCCAACATTTTCATGCTGCTTCAGGAGTTCTCATATAAAAAAGATGTTTCAAAAGAGGAAGATGAGAGTTTGGTCGGTGAAACAAAGAGAGGAGAAAATATCAGTCGTTGTCGTCGTGAGCCTGTCGTCGTGCCTCTCCCCCCATCTACCACCTCACATCTCTTTTTGAGGTAA

Protein sequence

MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVGETKRGENISRCRREPVVVPLPPSTTSHLFLR
Homology
BLAST of IVF0001563 vs. ExPASy TrEMBL
Match: A0A5A7UAZ2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00910 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 1  MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVGETKRGENIS 60
          MAS+V   PD  SDSS   L VRG+ ++F+L +E                G T R EN S
Sbjct: 22 MASKVMGDPDTISDSSRTTLGVRGSPDVFVLRREI------------DSTGGTMRRENPS 81

Query: 61 RCRREPVVVPLPPSTTSHLFLR 83
              +P VVPLPPSTT+H +LR
Sbjct: 82 PRCHDPAVVPLPPSTTAHPYLR 91

BLAST of IVF0001563 vs. ExPASy TrEMBL
Match: A0A5D3DJN9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00240 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1  MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVGETKRGENIS 60
          MAS+V   PD  SDSS   L VRG+ ++F+L +         KE D +  G T R EN S
Sbjct: 22 MASKVMGDPDTISDSSRTALGVRGSPDVFVLRR---------KEIDST--GGTMRRENPS 81

Query: 61 RCRREPVVVPLPPSTTSHLFLR 83
              +P VVPLPPSTT+H +LR
Sbjct: 82 PRCHDPAVVPLPPSTTAHPYLR 92

BLAST of IVF0001563 vs. NCBI nr
Match: KAA0051366.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.32e-07
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 1  MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVGETKRGENIS 60
          MAS+V   PD  SDSS   L VRG+ ++F+L +E                G T R EN S
Sbjct: 22 MASKVMGDPDTISDSSRTTLGVRGSPDVFVLRREIDS------------TGGTMRRENPS 81

Query: 61 RCRREPVVVPLPPSTTSHLFLR 82
              +P VVPLPPSTT+H +LR
Sbjct: 82 PRCHDPAVVPLPPSTTAHPYLR 91

BLAST of IVF0001563 vs. NCBI nr
Match: TYK23854.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 2.26e-07
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1  MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVGETKRGENIS 60
          MAS+V   PD  SDSS   L VRG+ ++F+L +         KE D +  G T R EN S
Sbjct: 22 MASKVMGDPDTISDSSRTALGVRGSPDVFVLRR---------KEIDST--GGTMRRENPS 81

Query: 61 RCRREPVVVPLPPSTTSHLFLR 82
              +P VVPLPPSTT+H +LR
Sbjct: 82 PRCHDPAVVPLPPSTTAHPYLR 92

BLAST of IVF0001563 vs. NCBI nr
Match: KAA0026297.1 (serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 3.54e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1  MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVG 51
          MASRVKRAPDATSDSSGMVLR   ++ I+ +  EF+ + D    E  SLVG
Sbjct: 5  MASRVKRAPDATSDSSGMVLRDDYSAVIYAMFLEFTEELDNLAGES-SLVG 54

BLAST of IVF0001563 vs. NCBI nr
Match: TYK21491.1 (serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 5.45e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1  MASRVKRAPDATSDSSGMVLRVRGASNIFMLLQEFSYKKDVSKEEDESLVG 51
          MASRVKRAPDATSDSSGMVLR   ++ I+ +  EF+ + D    E  SLVG
Sbjct: 5  MASRVKRAPDATSDSSGMVLRDDYSAVIYAMFLEFTEELDNLAGES-SLVG 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UAZ21.5e-0543.90CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DJN92.5e-0546.34CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0051366.11.32e-0743.90CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK23854.12.26e-0746.34CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0026297.13.54e-0458.82serine/threonine-protein kinase [Cucumis melo var. makuwa][more]
TYK21491.15.45e-0458.82serine/threonine-protein kinase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001563.1IVF0001563.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity