IVF0001480 (gene) Melon (IVF77) v1

Overview


Name	IVF0001480
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S13-like
Location	chr05: 10531703 .. 10531858 (-)
RNA-Seq Expression	IVF0001480
Synteny	IVF0001480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCAAAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGCATAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA

mRNA sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCAAAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGCATAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA

Coding sequence (CDS)

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCAAAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGCATAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA

Protein sequence

MCVFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

Homology

[Close]

BLAST of IVF0001480 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-15
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0001480 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-15
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   VFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           V +L +KG+AP+IPEDLYHLIKKAV+IRKHLER+RKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of IVF0001480 vs. ExPASy Swiss-Prot
Match: P47772 (40S ribosomal protein S13 OS=Ictalurus punctatus OX=7998 GN=rps13 PE=2 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-15
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L SKGLAP +PEDLYHLIKKAV++RKHLER+RKDKD+KFRLILV+S
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVES 120

[Close]

BLAST of IVF0001480 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-15
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L + GLAP+IPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0001480 vs. ExPASy Swiss-Prot
Match: P62300 (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 4.7e-15
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 3   VFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           V +L +KG+AP+IPEDLYHLIKKAV+IRKHLER+RKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]

BLAST of IVF0001480 vs. ExPASy TrEMBL
Match: A0A5A7ULW0 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00100 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L + GLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
Sbjct: 186 ILKAHGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 232

[Close]

BLAST of IVF0001480 vs. ExPASy TrEMBL
Match: A0A0L8G2L9 (40S ribosomal protein S13 OS=Octopus bimaculoides OX=37653 GN=OCBIM_22001297mg PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 39/47 (82.98%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L +KGLAPKIPEDLYHLIKKAVS+RKH+ER+RKDKDSKFRLIL++S
Sbjct: 74  ILKAKGLAPKIPEDLYHLIKKAVSVRKHMERNRKDKDSKFRLILIES 120

[Close]

BLAST of IVF0001480 vs. ExPASy TrEMBL
Match: A8UAD8 (40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L +KGLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILV+S
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0001480 vs. ExPASy TrEMBL
Match: A0A6P7TQ93 (40S ribosomal protein S13 OS=Octopus vulgaris OX=6645 GN=LOC115225287 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 39/47 (82.98%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L +KGLAPKIPEDLYHLIKKAVS+RKH+ER+RKDKDSKFRLIL++S
Sbjct: 74  ILKAKGLAPKIPEDLYHLIKKAVSVRKHMERNRKDKDSKFRLILIES 120

[Close]

BLAST of IVF0001480 vs. ExPASy TrEMBL
Match: A0A5A7TK12 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00500 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MCVFLLL--SKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +C+ ++L  S GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]

BLAST of IVF0001480 vs. NCBI nr
Match: KAA0056184.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.11e-18
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 51
           +L + GLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
Sbjct: 186 ILKAHGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 232

[Close]

BLAST of IVF0001480 vs. NCBI nr
Match: KAA0043612.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.21e-18
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MCVFLLL--SKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 51
           +C+ ++L  S GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]

BLAST of IVF0001480 vs. NCBI nr
Match: KAA0049888.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.55e-18
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 51
          +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0001480 vs. NCBI nr
Match: TYK07625.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK15131.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK22659.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.55e-18
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 51
          +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0001480 vs. NCBI nr
Match: KAA0046917.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.55e-18
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 51
          +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]

BLAST of IVF0001480 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-16
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L + GLAP+IPEDLYHLIKKAV+IRKHLER+RKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]

BLAST of IVF0001480 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-16
Identity = 39/47 (82.98%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 5   LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS 52
           +L + GLAP+IPEDLYHLIKKAV+IRKHLER+RKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

The following BLAST results are available for this feature:

BLAST of IVF0001480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	2.7e-15	85.11	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P62299	4.7e-15	79.59	40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2	[more]
P47772	4.7e-15	80.85	40S ribosomal protein S13 OS=Ictalurus punctatus OX=7998 GN=rps13 PE=2 SV=3	[more]
P46298	4.7e-15	85.11	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P62300	4.7e-15	79.59	40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2	[more]

BLAST of IVF0001480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULW0	1.8e-14	91.49	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0L8G2L9	2.0e-13	82.98	40S ribosomal protein S13 OS=Octopus bimaculoides OX=37653 GN=OCBIM_22001297mg P...	[more]
A8UAD8	2.0e-13	87.23	40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1	[more]
A0A6P7TQ93	2.0e-13	82.98	40S ribosomal protein S13 OS=Octopus vulgaris OX=6645 GN=LOC115225287 PE=3 SV=1	[more]
A0A5A7TK12	2.0e-13	81.13	40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of IVF0001480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056184.1	1.11e-18	91.49	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
KAA0043612.1	1.21e-18	81.13	40S ribosomal protein S13 [Cucumis melo var. makuwa]	[more]
KAA0049888.1	1.55e-18	87.23	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
TYK07625.1	1.55e-18	87.23	40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S riboso...	[more]
KAA0046917.1	1.55e-18	87.23	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0001480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	4.3e-16	82.98	Ribosomal protein S13/S15	[more]
AT4G00100.1	4.3e-16	82.98	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 14..49 e-value: 9.5E-8 score: 32.1
None	No IPR available	GENE3D	1.10.287.10		coord: 13..51 e-value: 3.9E-20 score: 73.9
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 5..51
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 5..51
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 8..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001480.1	IVF0001480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome