IVF0001474 (gene) Melon (IVF77) v1

Overview


Name	IVF0001474
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 17928612 .. 17928845 (+)
RNA-Seq Expression	IVF0001474
Synteny	IVF0001474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGAGCCAGAATAA

mRNA sequence

ATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGAGCCAGAATAA

Coding sequence (CDS)

ATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGAGCCAGAATAA

Protein sequence

MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEVPNRQEYQQELENQEEPE

Homology

[Close]

BLAST of IVF0001474 vs. ExPASy TrEMBL
Match: A0A5A7V414 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00670 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
          MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV
Sbjct: 4  MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 63

Query: 61 PNRQEYQQELENQEEPE 78
          PNRQEYQQELENQEEPE
Sbjct: 64 PNRQEYQQELENQEEPE 80

[Close]

BLAST of IVF0001474 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.2e-26
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FGAGYCD+EV  GYYD+G+ PLSSYMDVGP  SYMHGHGR +GEHNEYLYHEA  +V
Sbjct: 52  MPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADV 111

Query: 61  PNRQEYQQELENQEEPE 78
            +RQEYQQE ENQE+ E
Sbjct: 112 SDRQEYQQEPENQEDRE 128

[Close]

BLAST of IVF0001474 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-25
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FGAGYCD+EV IGYYD+ V PLSSYMDVGP TSYM+GHGR +GEHNEYLYHEA  +V
Sbjct: 401 MPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDV 460

Query: 61  PNRQEYQQELENQEEPE 78
            +RQEYQQE +NQE+ E
Sbjct: 461 SDRQEYQQEPKNQEDRE 477

[Close]

BLAST of IVF0001474 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-24
Identity = 59/77 (76.62%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FG GYCD EV+  YYDSGV P SSYMDVGP TSYMHGH  D+GEHNEYLYHEA  EV
Sbjct: 120 MPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEV 179

Query: 61  PNRQEYQQELENQEEPE 78
            +RQEYQQE ENQEE E
Sbjct: 180 SDRQEYQQEPENQEELE 196

[Close]

BLAST of IVF0001474 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FGAGYCD+++  GYYD+GV P SSYMDV P TSYMHGHGR +G+HNEYLYHEA  +V
Sbjct: 58  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 117

Query: 61  PNRQEYQQELENQEEPE 78
            +RQEYQQE ENQE+ E
Sbjct: 118 SDRQEYQQEPENQEDRE 134

[Close]

BLAST of IVF0001474 vs. NCBI nr
Match: KAA0060605.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK02266.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (418), Expect = 1.61e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
          MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV
Sbjct: 4  MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 63

Query: 61 PNRQEYQQELENQEEPE 77
          PNRQEYQQELENQEEPE
Sbjct: 64 PNRQEYQQELENQEEPE 80

[Close]

BLAST of IVF0001474 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 1.70e-35
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FGAGYCD+EV  GYYD+G+ PLSSYMDVGP  SYMHGHGR +GEHNEYLYHEA  +V
Sbjct: 52  MPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADV 111

Query: 61  PNRQEYQQELENQEEPE 77
            +RQEYQQE ENQE+ E
Sbjct: 112 SDRQEYQQEPENQEDRE 128

[Close]

BLAST of IVF0001474 vs. NCBI nr
Match: KAA0048355.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 1.22e-33
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
          MP FGAGYCD+++  GYYD+GV P SSYMDV P TSYMHGHGR +G+HNEYLYHEA  +V
Sbjct: 4  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 63

Query: 61 PNRQEYQQELENQEEPE 77
           +RQEYQQE ENQE+ E
Sbjct: 64 SDRQEYQQEPENQEDRE 80

[Close]

BLAST of IVF0001474 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 4.97e-33
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FG GYCD EV+  YYDSGV P SSYMDVGP TSYMHGH  D+GEHNEYLYHEA  EV
Sbjct: 120 MPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEV 179

Query: 61  PNRQEYQQELENQEE 75
            +RQEYQQE ENQEE
Sbjct: 180 SDRQEYQQEPENQEE 194

[Close]

BLAST of IVF0001474 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 5.97e-33
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1   MPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEV 60
           MP FGAGYCD+++  GYYD+GV P SSYMDV P TSYMHGHGR +G+HNEYLYHEA  +V
Sbjct: 58  MPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAPADV 117

Query: 61  PNRQEYQQELENQEEPE 77
            +RQEYQQE ENQE+ E
Sbjct: 118 SDRQEYQQEPENQEDRE 134

The following BLAST results are available for this feature:

BLAST of IVF0001474 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V414	3.1e-37	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	9.2e-26	75.32	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	7.8e-25	75.32	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	2.3e-24	76.62	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BMS3	8.6e-24	71.43	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of IVF0001474 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060605.1	1.61e-51	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	1.70e-35	75.32	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0048355.1	1.22e-33	71.43	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0025972.1	4.97e-33	77.33	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01111.1	5.97e-33	71.43	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of IVF0001474 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001474.1	IVF0001474.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance