IVF0001409 (gene) Melon (IVF77) v1

Overview


Name	IVF0001409
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Actin T1-like protein
Location	chr04: 30650824 .. 30653083 (-)
RNA-Seq Expression	IVF0001409
Synteny	IVF0001409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAGATGGGGTACCATGGCGGTAGATACTAGATAAGCCGATAGGACCGAAAACCAGAAAGTTCTGAGAAGCCAAAGCGAGAGATAGAGAGACGAAGGAATGGAGAAGTACTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACACCGACCCAGGTCGTTTTTTCAACATTTGGATTGGAGCCGCCGGGTTTTCTGTTCTTACATGGTTCAATCCCTACATGTGGCAACTCTCCAATCAATTCAAGTACTTCTTTCTTTTTTTCTTTCTTTCTTTCTTAGTGAAATGTCTTGATTCTTTAAACTACAGCACTGTTAGTTTGAATGCTTGCTCTTCTCTGCAATTTTCCTTCCTGCTTCATTACTTTGTTGTTATGTATTGATGTTCGATTTCTGTAGGAATAACTTTACATTATTTTTGGTGGGTAGGGTTTGAATTTTTTTATAATTAAATAAATCCCAGTTGACCTTATCACTCTAGAAGTTTTAGGGACTGTAGATGACTCAGTTTCATTGCGTGTATAGTGATAATTTTCTCACTTATTGTTCAACTGGCCGTGAAATTCGAAATTTTGGTGTACAGTGATAAATCTTTATACTTATTGTTGTCTGTATAGAAATAAACACCTTTTGTTCTACGGAAGAGTTGATTCTGTTATTGGAATTTATGTTTCTTGTCATTGGAATTTATGCGACCCTCCAAAAAATAAATGTTGCCAACGCTTCTATCTGTACACGAACTAAATTTTTTAGTTTGAAACTCCGACACTCCAGACACTTGTTAAACACGAATAAGACACTCCAGACACTTGTTAAATCACGAATAAAAGACTTGTTAGTGCAACAGATGTGTTAAATTGCATAGAACGCTACATAAATAGACTAAAAAGACATATATATAACAATAGTTGTGAAATACACCAAACTAAGCTTTTTTTTTAAGTATATACATGCATGCATTAGCTCATTTATTTTAGAAATTTCTTTTGGTATAAAAATGAGATATAGTTCTAAAATTTATATTTTAATAAACGTTTCCTCCTCGTTTTCTTTATTCCTTTAACAAAAATGACATGACACCATGTTCTGTAACATTTGTATATGTGCTTTTCTTAGTCTACAAAAATATAATTAACTTTTCCTATGAAGTATATGATCTATCATAATTATTCTGATTTTCTTCTTATGTTCTATGCTAATCTTGTTTACTGATTCTGCTTCTTTTAGTCTTGAGAAGCACTCTCGTACATGAATCTGATATAGCGGATTTTTATATCAGGTTTATGTCTCATGCTATCACTTGGTTGGTTCATTATGTTGTCCTATTGCTTAGAACTCGAAACACGAATCTAATTTTGGTATAAATATGCATTATGGGTTGTAATCTGCTGATATAGGAGATATTGGCATCATTACTTGATGCTTTTTGTACACTTCTTCTTTTGCATCATTCCCATTAGAGATCATGGGTGTGCGCTGTGATTCTTTATATTGTTTTTGCTGTTACTGTTTTGCAATCACTTAGAACTCAAAACACGAATCTAATTTTGATAAAATGTGCATTCTCAATTTGTAATTTATAGTTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCTCGTGAAAAGAATCAGCCATACCAGTTCAAGGTACGATGTTCTATTTCATTTTACATTGAAACAACCACGTTTAACTTTTAATATCTCATGGAATGGCTATGTTGTTCTTATAAAATTTCCATTGCTGCAGTGGAATCAATACATGGACAAGGACCACCGGGATTCCTATTATTTTAACTGGCCTATTTACTTTCCTTAGGTTTCTGATTATGTAAGAAAACTGTTGCGTGACTGCTTAGTTATTTTCTTCGTTTGGGTGGCAAAGACAGATTACTATTGCACCAAGACTTGAAGGGTTATGAATGTGTGGAATCATATTTCTTTTGGCTCGTTATTCAAACGGCATGCATGTGGTCATTCTATACTGTAGTAATGATTTTGACAATGGAAGAACCGTACCAAATACCTTTTCCTGTTATATGATAAAGATCTGAAGGGACGTTATATAATTTATATCATTCTGAAAAGGAACATAAAAACTAAAAAAACTGGGTGGTCAGATGTTCAAATGAGATTTTAACTTCCTCTTTCATGATCAATAGATAATATAACGTAGTCAAGTGGAATTATGTTATCATCTATAGATCTTAGATTCTGATAACTTCTTGCTTATCTCTTACCATA

mRNA sequence

CACAGATGGGGTACCATGGCGGTAGATACTAGATAAGCCGATAGGACCGAAAACCAGAAAGTTCTGAGAAGCCAAAGCGAGAGATAGAGAGACGAAGGAATGGAGAAGTACTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACACCGACCCAGGTCGTTTTTTCAACATTTGGATTGGAGCCGCCGGGTTTTCTGTTCTTACATGGTTCAATCCCTACATGTGGCAACTCTCCAATCAATTCAATTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCTCGTGAAAAGAATCAGCCATACCAGTTCAAGTGGAATCAATACATGGACAAGGACCACCGGGATTCCTATTATTTTAACTGGCCTATTTACTTTCCTTAGGTTTCTGATTATGTAAGAAAACTGTTGCGTGACTGCTTAGTTATTTTCTTCGTTTGGGTGGCAAAGACAGATTACTATTGCACCAAGACTTGAAGGGTTATGAATGTGTGGAATCATATTTCTTTTGGCTCGTTATTCAAACGGCATGCATGTGGTCATTCTATACTGTAGTAATGATTTTGACAATGGAAGAACCGTACCAAATACCTTTTCCTGTTATATGATAAAGATCTGAAGGGACGTTATATAATTTATATCATTCTGAAAAGGAACATAAAAACTAAAAAAACTGGGTGGTCAGATGTTCAAATGAGATTTTAACTTCCTCTTTCATGATCAATAGATAATATAACGTAGTCAAGTGGAATTATGTTATCATCTATAGATCTTAGATTCTGATAACTTCTTGCTTATCTCTTACCATA

Coding sequence (CDS)

ATGGAGAAGTACTTCGGAAATGCTTACAGAGGCGACCCTGGAGTTCCACACACCGACCCAGGTCGTTTTTTCAACATTTGGATTGGAGCCGCCGGGTTTTCTGTTCTTACATGGTTCAATCCCTACATGTGGCAACTCTCCAATCAATTCAATTGGCATGACAAAGCGTTTTTGTTTGAGCAATACCACTGGAAAAAGGCTCGTGAAAAGAATCAGCCATACCAGTTCAAGTGGAATCAATACATGGACAAGGACCACCGGGATTCCTATTATTTTAACTGGCCTATTTACTTTCCTTAG

Protein sequence

MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFEQYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP

Homology

[Close]

BLAST of IVF0001409 vs. ExPASy TrEMBL
Match: A0A1S3B6B6 (uncharacterized protein LOC103486497 OS=Cucumis melo OX=3656 GN=LOC103486497 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-56
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 100
           QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99

[Close]

BLAST of IVF0001409 vs. ExPASy TrEMBL
Match: A0A6J1CS98 (uncharacterized protein LOC111014295 OS=Momordica charantia OX=3673 GN=LOC111014295 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 8.7e-53
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 100
           QYHWKKAR+KNQPYQFKWNQYMDKDHRDSYYFNWP+YFP
Sbjct: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. ExPASy TrEMBL
Match: A0A6J1J1C9 (uncharacterized protein LOC111481799 OS=Cucurbita maxima OX=3661 GN=LOC111481799 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.8e-51
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHTDP RF NIWIG+A FS+LTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSILTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 100
           QYHWKKAREKNQPYQFKWNQYMDK HRDSYY+NWP+YFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. ExPASy TrEMBL
Match: A0A6J1F2Q8 (uncharacterized protein LOC111441842 OS=Cucurbita moschata OX=3662 GN=LOC111441842 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.8e-51
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHTDP RF NIWIG+A FS+LTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSILTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 100
           QYHWKKAREKNQPYQFKWNQYMDK HRDSYY+NWP+YFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. ExPASy TrEMBL
Match: A0A6P8DKX4 (uncharacterized protein LOC116208603 OS=Punica granatum OX=22663 GN=LOC116208603 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DP RF NIWIG+A FS LTWFNPYMWQL+NQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADPERFVNIWIGSAAFSALTWFNPYMWQLTNQFNWHDKAFLFE 60

Query: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 100
           QYHWKKAR KNQPY+FKWN+YMDKDHRDSYYFNWP+YFP
Sbjct: 61  QYHWKKARAKNQPYKFKWNEYMDKDHRDSYYFNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. NCBI nr
Match: XP_008442705.1 (PREDICTED: uncharacterized protein LOC103486497 [Cucumis melo])

HSP 1 Score: 225 bits (574), Expect = 1.13e-74
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
          MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1  MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61 QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99
          QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP
Sbjct: 61 QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99

[Close]

BLAST of IVF0001409 vs. NCBI nr
Match: XP_038903427.1 (uncharacterized protein LOC120090020 [Benincasa hispida])

HSP 1 Score: 213 bits (543), Expect = 6.09e-70
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1  MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
          MEKYFGNAYRGDPGVPHTDP RF NIWIG+A FSV TWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1  MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSVFTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61 QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99
          QYHWKKAR+KNQPYQFKWNQYMDKDHRDSYYFNWP+YFP
Sbjct: 61 QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. NCBI nr
Match: XP_022144660.1 (uncharacterized protein LOC111014295 [Momordica charantia])

HSP 1 Score: 213 bits (542), Expect = 8.65e-70
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1  MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
          MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1  MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61 QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99
          QYHWKKAR+KNQPYQFKWNQYMDKDHRDSYYFNWP+YFP
Sbjct: 61 QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. NCBI nr
Match: XP_023529054.1 (uncharacterized protein LOC111791803 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (528), Expect = 1.18e-67
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
          MEKYFGNAYRGDPGVPHTDP RF NIWIG+A FSVLTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1  MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSVLTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61 QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99
          QYHWKKAREKNQPYQFKWNQYMDK HRDSYY+NWP+YFP
Sbjct: 61 QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. NCBI nr
Match: XP_022934761.1 (uncharacterized protein LOC111441842 [Cucurbita moschata] >XP_022983166.1 uncharacterized protein LOC111481799 [Cucurbita maxima] >KAG6580616.1 hypothetical protein SDJN03_20618, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017373.1 hypothetical protein SDJN02_19238 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207 bits (527), Expect = 1.68e-67
Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1  MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
          MEKYFGNAYRGDPGVPHTDP RF NIWIG+A FS+LTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1  MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSILTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61 QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99
          QYHWKKAREKNQPYQFKWNQYMDK HRDSYY+NWP+YFP
Sbjct: 61 QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]

BLAST of IVF0001409 vs. TAIR 10
Match: AT3G09860.1 (unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 177.2 bits (448), Expect = 6.6e-45
Identity = 78/99 (78.79%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH D  RF NIWIG+A FSVLTW NPYMWQLSNQFN+HDK  LFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFNYHDKWMLFE 60

Query: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 100
           QYHWKKAR K QPY+FKWN+ + K+ RDSYY+NWP+YFP
Sbjct: 61  QYHWKKARAKKQPYEFKWNK-IPKEVRDSYYYNWPVYFP 98

The following BLAST results are available for this feature:

BLAST of IVF0001409 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6B6	1.7e-56	100.00	uncharacterized protein LOC103486497 OS=Cucumis melo OX=3656 GN=LOC103486497 PE=...	[more]
A0A6J1CS98	8.7e-53	92.93	uncharacterized protein LOC111014295 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1J1C9	4.8e-51	90.91	uncharacterized protein LOC111481799 OS=Cucurbita maxima OX=3661 GN=LOC111481799...	[more]
A0A6J1F2Q8	4.8e-51	90.91	uncharacterized protein LOC111441842 OS=Cucurbita moschata OX=3662 GN=LOC1114418...	[more]
A0A6P8DKX4	1.1e-50	88.89	uncharacterized protein LOC116208603 OS=Punica granatum OX=22663 GN=LOC116208603...	[more]

BLAST of IVF0001409 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442705.1	1.13e-74	100.00	PREDICTED: uncharacterized protein LOC103486497 [Cucumis melo]	[more]
XP_038903427.1	6.09e-70	92.93	uncharacterized protein LOC120090020 [Benincasa hispida]	[more]
XP_022144660.1	8.65e-70	92.93	uncharacterized protein LOC111014295 [Momordica charantia]	[more]
XP_023529054.1	1.18e-67	91.92	uncharacterized protein LOC111791803 [Cucurbita pepo subsp. pepo]	[more]
XP_022934761.1	1.68e-67	90.91	uncharacterized protein LOC111441842 [Cucurbita moschata] >XP_022983166.1 unchar...	[more]

BLAST of IVF0001409 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09860.1	6.6e-45	78.79	unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36360	ACTIN T1-LIKE PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001409.2	IVF0001409.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane