IVF0001408 (gene) Melon (IVF77) v1

Overview


Name	IVF0001408
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L15
Location	chr11: 25020600 .. 25020914 (+)
RNA-Seq Expression	IVF0001408
Synteny	IVF0001408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACTACATACCAGATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACTGAAGATGACGACTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAACAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGTGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

mRNA sequence

ATGAAAGACTACATACCAGATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACTGAAGATGACGACTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAACAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGTGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

Coding sequence (CDS)

ATGAAAGACTACATACCAGATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACTGAAGATGACGACTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAACAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGTGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

Protein sequence

MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG

Homology

[Close]

BLAST of IVF0001408 vs. ExPASy TrEMBL
Match: A0A5D3CCS9 (50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001030 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.0e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60
           MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA
Sbjct: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61  EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 105
           EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Sbjct: 61  EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

[Close]

BLAST of IVF0001408 vs. ExPASy TrEMBL
Match: A0A5A7T8R2 (Putative arabinose 5-phosphate isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001640 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60
          MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA
Sbjct: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61 EEGVLEN 68
          EEGVLEN
Sbjct: 61 EEGVLEN 67

[Close]

BLAST of IVF0001408 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 61/97 (62.89%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLEN 67
           GWR+KK                  LEA+EG+VGG             GRRRRAEEGVLEN
Sbjct: 102 GWRQKKA----------------SLEAKEGIVGG-------------GRRRRAEEGVLEN 161

Query: 68  GKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 105
           GKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 162 GKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 169

[Close]

BLAST of IVF0001408 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.1e-19
Identity = 66/108 (61.11%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNK---------ASCGRRR 67
           GWRRKK                  LEAEEGVVGG  RRRWRR K            GRRR
Sbjct: 4   GWRRKKA----------------SLEAEEGVVGGRIRRRWRRKKTFLEAEEGVVGGGRRR 63

Query: 68  RAEEGVL--ENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 105
           RA+EGVL  ENGK EE RKSWRIYWRGRKSRR MEEEKFA   FLKQG
Sbjct: 64  RAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKFASVFFLKQG 95

[Close]

BLAST of IVF0001408 vs. ExPASy TrEMBL
Match: A0A5D3C8N2 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00170 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.9e-11
Identity = 44/69 (63.77%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   MKDYIPD----GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGR 60
           +KD  P     GWRRKKL        WLETEDDDWLEAEEGVVGGERRRRW+R KAS   
Sbjct: 324 IKDLAPSGRSCGWRRKKL--------WLETEDDDWLEAEEGVVGGERRRRWKRKKASL-- 380

Query: 61  RRRAEEGVL 66
              AEEGV+
Sbjct: 384 --EAEEGVV 380

[Close]

BLAST of IVF0001408 vs. NCBI nr
Match: KAA0034559.1 (50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal protein L15 [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (546), Expect = 8.59e-67
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60
           MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA
Sbjct: 1   MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61  EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104
           EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Sbjct: 61  EEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

[Close]

BLAST of IVF0001408 vs. NCBI nr
Match: KAA0038031.1 (putative arabinose 5-phosphate isomerase [Cucumis melo var. makuwa] >TYK20571.1 putative arabinose 5-phosphate isomerase [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 7.08e-38
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60
          MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA
Sbjct: 1  MKDYIPDGWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRA 60

Query: 61 EEGVLEN 67
          EEGVLEN
Sbjct: 61 EEGVLEN 67

[Close]

BLAST of IVF0001408 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 3.62e-26
Identity = 61/97 (62.89%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGRRRRAEEGVLEN 67
           GWR+KK                  LEA+EG+VGG             GRRRRAEEGVLEN
Sbjct: 102 GWRQKKA----------------SLEAKEGIVGG-------------GRRRRAEEGVLEN 161

Query: 68  GKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104
           GKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 162 GKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 169

[Close]

BLAST of IVF0001408 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 1.12e-23
Identity = 66/108 (61.11%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 8   GWRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASC---------GRRR 67
           GWRRKK                  LEAEEGVVGG  RRRWRR K            GRRR
Sbjct: 4   GWRRKKA----------------SLEAEEGVVGGRIRRRWRRKKTFLEAEEGVVGGGRRR 63

Query: 68  RAEEGVL--ENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104
           RA+EGVL  ENGK EE RKSWRIYWRGRKSRR MEEEKFA   FLKQG
Sbjct: 64  RAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKFASVFFLKQG 95

[Close]

BLAST of IVF0001408 vs. NCBI nr
Match: TYK08201.1 (40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.16e-13
Identity = 44/69 (63.77%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   MKDYIPDG----WRRKKLWLETEDDDWLETEDDDWLEAEEGVVGGERRRRWRRNKASCGR 60
           +KD  P G    WRRKKLWLETEDDD        WLEAEEGVVGGERRRRW+R KAS   
Sbjct: 324 IKDLAPSGRSCGWRRKKLWLETEDDD--------WLEAEEGVVGGERRRRWKRKKASL-- 380

Query: 61  RRRAEEGVL 65
              AEEGV+
Sbjct: 384 --EAEEGVV 380

The following BLAST results are available for this feature:

BLAST of IVF0001408 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCS9	7.0e-53	100.00	50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7T8R2	9.9e-31	100.00	Putative arabinose 5-phosphate isomerase OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SHI4	1.3e-19	62.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CTI7	5.1e-19	61.11	Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G...	[more]
A0A5D3C8N2	3.9e-11	63.77	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of IVF0001408 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034559.1	8.59e-67	100.00	50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal p...	[more]
KAA0038031.1	7.08e-38	100.00	putative arabinose 5-phosphate isomerase [Cucumis melo var. makuwa] >TYK20571.1 ...	[more]
KAA0025306.1	3.62e-26	62.89	hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa]	[more]
KAA0063229.1	1.12e-23	61.11	lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [...	[more]
TYK08201.1	1.16e-13	63.77	40S ribosomal protein S15-4 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0001408 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001408.1	IVF0001408.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901135	carbohydrate derivative metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0097367	carbohydrate derivative binding
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome