IVF0001372 (gene) Melon (IVF77) v1

Overview


Name	IVF0001372
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr05: 20095142 .. 20095351 (+)
RNA-Seq Expression	IVF0001372
Synteny	IVF0001372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCCATTGCTGGAGCAATGTCTAAAGCAAACCTTCAGGCGGTCATGGAAACAGTCGTCAACAATGCTTCTGACCACAACAAACAAGATGAACCTGAAGATATCGCAAATCTCTCAAATTCATCTGTCAATGATATCGATTTTGATAATAATTCTTATTACAACTTTGATAATTTCGACCCCTATTTGGACTCCCAACCGAGATGA

mRNA sequence

ATGACCTCCATTGCTGGAGCAATGTCTAAAGCAAACCTTCAGGCGGTCATGGAAACAGTCGTCAACAATGCTTCTGACCACAACAAACAAGATGAACCTGAAGATATCGCAAATCTCTCAAATTCATCTGTCAATGATATCGATTTTGATAATAATTCTTATTACAACTTTGATAATTTCGACCCCTATTTGGACTCCCAACCGAGATGA

Coding sequence (CDS)

ATGACCTCCATTGCTGGAGCAATGTCTAAAGCAAACCTTCAGGCGGTCATGGAAACAGTCGTCAACAATGCTTCTGACCACAACAAACAAGATGAACCTGAAGATATCGCAAATCTCTCAAATTCATCTGTCAATGATATCGATTTTGATAATAATTCTTATTACAACTTTGATAATTTCGACCCCTATTTGGACTCCCAACCGAGATGA

Protein sequence

MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNFDPYLDSQPR

Homology

[Close]

BLAST of IVF0001372 vs. ExPASy TrEMBL
Match: A0A5D3BD22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001850 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIAGA S+A+LQAVMETVVNN S+ NKQ++PEDI NLS+SSVNDI+F+N+ YYNFD F
Sbjct: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60

Query: 61 DPYLDSQP 69
          DPYLDSQP
Sbjct: 61 DPYLDSQP 68

[Close]

BLAST of IVF0001372 vs. ExPASy TrEMBL
Match: A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
           MT+I GA S+A+LQAVM+TVVNN SD  KQD PEDI NLSNSSVNDIDF+NN YYNFD F
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 61  DPYLDSQP 69
           DPYL+SQP
Sbjct: 185 DPYLNSQP 192

[Close]

BLAST of IVF0001372 vs. ExPASy TrEMBL
Match: A0A5A7STS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00870 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIAGA S+++LQAV+ETVVNN SD NKQD+PEDI NLS+SSVNDIDF N+ YYNFD  
Sbjct: 1  MTSIAGAKSESDLQAVIETVVNNNSDDNKQDDPEDITNLSDSSVNDIDFANDPYYNFDIS 60

Query: 61 DPYLDSQP 69
          DPYLDSQP
Sbjct: 61 DPYLDSQP 68

[Close]

BLAST of IVF0001372 vs. ExPASy TrEMBL
Match: A0A5D3BY11 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00050 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.2e-17
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1   MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
           MTSIA A S+A+LQAVMETVVNN SD NKQD PEDI NLS+SSVNDIDF N+ YYNFD F
Sbjct: 140 MTSIAEAKSEADLQAVMETVVNNNSDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIF 199

Query: 61  DPYLDS 67
           DPYLDS
Sbjct: 200 DPYLDS 205

[Close]

BLAST of IVF0001372 vs. ExPASy TrEMBL
Match: A0A5A7TBC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00910 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.2e-17
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIA A S+A+LQAVMETVVNN SD NKQD PEDI NLS+SSVNDIDF N+ YYNFD F
Sbjct: 1  MTSIAEAKSEADLQAVMETVVNNNSDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIF 60

Query: 61 DPYLDS 67
          DPYLDS
Sbjct: 61 DPYLDS 66

[Close]

BLAST of IVF0001372 vs. NCBI nr
Match: KAA0065792.1 (hypothetical protein E6C27_scaffold37G00900 [Cucumis melo var. makuwa] >TYJ96531.1 hypothetical protein E5676_scaffold546G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 1.28e-26
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIAGA S+A+LQAVMETVVNN S+ NKQ++PEDI NLS+SSVNDI+F+N+ YYNFD F
Sbjct: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60

Query: 61 DPYLDSQP 68
          DPYLDSQP
Sbjct: 61 DPYLDSQP 68

[Close]

BLAST of IVF0001372 vs. NCBI nr
Match: KAA0033913.1 (hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK01295.1 hypothetical protein E5676_scaffold49G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 5.23e-26
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIAGA S+++LQAV+ETVVNN SD NKQD+PEDI NLS+SSVNDIDF N+ YYNFD  
Sbjct: 1  MTSIAGAKSESDLQAVIETVVNNNSDDNKQDDPEDITNLSDSSVNDIDFANDPYYNFDIS 60

Query: 61 DPYLDSQP 68
          DPYLDSQP
Sbjct: 61 DPYLDSQP 68

[Close]

BLAST of IVF0001372 vs. NCBI nr
Match: KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 3.77e-25
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
           MT+I GA S+A+LQAVM+TVVNN SD  KQD PEDI NLSNSSVNDIDF+NN YYNFD F
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 61  DPYLDSQPR 69
           DPYL+SQP 
Sbjct: 185 DPYLNSQPE 193

[Close]

BLAST of IVF0001372 vs. NCBI nr
Match: KAA0038921.1 (hypothetical protein E6C27_scaffold1170G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.02e-25
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIA A S+A+LQAVMETVVNN SD NKQD PEDI NLS+SSVNDIDF N+ YYNFD F
Sbjct: 1  MTSIAEAKSEADLQAVMETVVNNNSDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIF 60

Query: 61 DPYLDS 66
          DPYLDS
Sbjct: 61 DPYLDS 66

[Close]

BLAST of IVF0001372 vs. NCBI nr
Match: KAA0035884.1 (hypothetical protein E6C27_scaffold56G00490 [Cucumis melo var. makuwa] >TYJ98814.1 hypothetical protein E5676_scaffold5891G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.54e-24
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MTSIAGAMSKANLQAVMETVVNNASDHNKQDEPEDIANLSNSSVNDIDFDNNSYYNFDNF 60
          MTSIA A S+A+LQAV ET+VN  SD NKQD+PEDIANLS SSVNDIDFDN+ YYNFD F
Sbjct: 1  MTSIARAKSEADLQAVRETIVNKTSDENKQDKPEDIANLSGSSVNDIDFDNDPYYNFDIF 60

Query: 61 DPYLDSQ 67
          + YLDSQ
Sbjct: 61 EAYLDSQ 67

The following BLAST results are available for this feature:

BLAST of IVF0001372 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BD22	3.7e-18	77.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CI63	4.9e-18	77.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7STS6	1.1e-17	77.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BY11	9.2e-17	80.30	Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7TBC7	9.2e-17	80.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0001372 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065792.1	1.28e-26	77.94	hypothetical protein E6C27_scaffold37G00900 [Cucumis melo var. makuwa] >TYJ96531...	[more]
KAA0033913.1	5.23e-26	77.94	hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0026133.1	3.77e-25	76.81	hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593...	[more]
KAA0038921.1	8.02e-25	80.30	hypothetical protein E6C27_scaffold1170G00910 [Cucumis melo var. makuwa]	[more]
KAA0035884.1	3.54e-24	76.12	hypothetical protein E6C27_scaffold56G00490 [Cucumis melo var. makuwa] >TYJ98814...	[more]

BLAST of IVF0001372 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001372.1	IVF0001372.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity