IVF0001247 (gene) Melon (IVF77) v1

Overview


Name	IVF0001247
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr10: 18171327 .. 18171781 (-)
RNA-Seq Expression	IVF0001247
Synteny	IVF0001247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTCCTCTAGCACCACCTATGACAATTAACCATAATGATAAGCAATATGAGGGTGATGATTTTCATGGCTTAGACGATAACCAAGTTACATTACTGGGGGAGTTGAGACGTGTGGGACATGGAACAGTTAGAAAAAGAGGTCGTGGGAGAGCTTATCAAAATGTCCAATAAAGGAGAGCTCAACAGAAGCATCTCAATTTGAGCATAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGAGAAAACTGATCCAGAGAAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTACTTGCCATAATTTTAGCGACAACCAAAATGTTAGGTTTTGTGTTTCCAAATTTAAGGATTATGCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGGAGAAGAAATCTTGAAGTACCAGTTGATTCATGGTATGAATTCAAATAA

mRNA sequence

ATGCCACCTCCTCTAGCACCACCTATGACAATTAACCATAATGATAAGCAATATGAGGGTGATGATTTTCATGGCTTAGACGATAACCAAGTTACATTACTGGGGGAGTTGAGACGTGTGGGACATGGAACAGTTAGAAAAAGAGGTCGTGGGAGAGCTTATCAAAATCATAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGAGAAAACTGATCCAGAGAAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTACTTGCCATAATTTTAGCGACAACCAAAATGTTAGGTTTTGTGTTTCCAAATTTAAGGATTATGCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGGAGAAGAAATCTTGAAGTACCAGTTGATTCATGGTATGAATTCAAATAA

Coding sequence (CDS)

ATGCCACCTCCTCTAGCACCACCTATGACAATTAACCATAATGATAAGCAATATGAGGGTGATGATTTTCATGGCTTAGACGATAACCAAGTTACATTACTGGGGGAGTTGAGACGTGTGGGACATGGAACAGTTAGAAAAAGAGGTCGTGGGAGAGCTTATCAAAATCATAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGAGAAAACTGATCCAGAGAAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTACTTGCCATAATTTTAGCGACAACCAAAATGTTAGGTTTTGTGTTTCCAAATTTAAGGATTATGCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGGAGAAGAAATCTTGAAGTACCAGTTGATTCATGGTATGAATTCAAATAA

Protein sequence

MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNHNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK

Homology

[Close]

BLAST of IVF0001247 vs. ExPASy TrEMBL
Match: A0A5D3CHG3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001250 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 112/150 (74.67%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN---- 60
           MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN    
Sbjct: 25  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 84

Query: 61  ---------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 120
                     NM AIKFKIPKFF KTDP++YI+WEKEVENVF CHNF+D Q VRF VSK 
Sbjct: 85  AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 144

Query: 121 KDYAQTWWDKLMSRRRRNLEVPVDSWYEFK 138
           KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Sbjct: 145 KDYAQTWWDKLMSRRRRNLEAPIDSWYEFK 174

[Close]

BLAST of IVF0001247 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 112/150 (74.67%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN---- 60
           MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN    
Sbjct: 45  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 104

Query: 61  ---------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 120
                     NM AIKFKIPKFF KTDP++YI+WEKEVENVF CHNF+D Q VRF VSK 
Sbjct: 105 AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 164

Query: 121 KDYAQTWWDKLMSRRRRNLEVPVDSWYEFK 138
           KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Sbjct: 165 KDYAQTWWDKLMSRRRRNLEAPIDSWYEFK 194

[Close]

BLAST of IVF0001247 vs. ExPASy TrEMBL
Match: A0A5A7TYI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00200 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 103/145 (71.03%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN---- 60
           MPPPLAP M INHN+ QYEGD    LDD+QVTLL E RRVGHG VR+RG G+AYQN    
Sbjct: 21  MPPPLAPLMAINHNNNQYEGDGLDDLDDDQVTLLVEPRRVGHGVVRRRGHGKAYQNIQRR 80

Query: 61  ---------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 120
                     NM AIKFKIPKFF KTDPE+YIQWEKEVENVF CHNFS+ Q VRFCV+KF
Sbjct: 81  TQQETPQLERNMAAIKFKIPKFFGKTDPEEYIQWEKEVENVFACHNFSNEQKVRFCVAKF 140

Query: 121 KDYAQTWWDKLMSRRRRNLEVPVDS 133
           KDY QTWW KLMSRR+RNLE P+DS
Sbjct: 141 KDYDQTWWHKLMSRRKRNLEAPIDS 165

[Close]

BLAST of IVF0001247 vs. ExPASy TrEMBL
Match: A0A5A7T993 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001470 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 86/126 (68.25%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN---- 60
           MPPP APPM INHND Q EGD   GLDD+QVTLL E RR GH  VR++GRGRAYQN    
Sbjct: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60

Query: 61  ---------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 114
                     N+ AIKFKI KFF KTDPE+YIQWEKEVENVF CHNF++ Q VRFCV KF
Sbjct: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120

[Close]

BLAST of IVF0001247 vs. ExPASy TrEMBL
Match: A0A5D3CFQ1 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00990 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39
Identity = 83/114 (72.81%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 37  LRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEK 96
           L   G+G VR+RGR RAYQN              NMGAIKFKIPKFF KTDPE+YIQWEK
Sbjct: 5   LATYGYGVVRRRGRRRAYQNIQRRAQQEAPRFECNMGAIKFKIPKFFRKTDPEEYIQWEK 64

Query: 97  EVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK 138
           EVENVF CHNF D Q VRFCVSKFKDYA TWWDKLMSRRRRNLE P+DS YEFK
Sbjct: 65  EVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRNLEAPIDSCYEFK 118

[Close]

BLAST of IVF0001247 vs. NCBI nr
Match: TYK09709.1 (uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 1.22e-75
Identity = 112/150 (74.67%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNH--- 60
           MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN    
Sbjct: 25  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 84

Query: 61  ----------NMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 120
                     NM AIKFKIPKFF KTDP++YI+WEKEVENVF CHNF+D Q VRF VSK 
Sbjct: 85  AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 144

Query: 121 KDYAQTWWDKLMSRRRRNLEVPVDSWYEFK 137
           KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Sbjct: 145 KDYAQTWWDKLMSRRRRNLEAPIDSWYEFK 174

[Close]

BLAST of IVF0001247 vs. NCBI nr
Match: KAA0043652.1 (uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 2.34e-75
Identity = 112/150 (74.67%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNH--- 60
           MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN    
Sbjct: 45  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 104

Query: 61  ----------NMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 120
                     NM AIKFKIPKFF KTDP++YI+WEKEVENVF CHNF+D Q VRF VSK 
Sbjct: 105 AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 164

Query: 121 KDYAQTWWDKLMSRRRRNLEVPVDSWYEFK 137
           KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Sbjct: 165 KDYAQTWWDKLMSRRRRNLEAPIDSWYEFK 194

[Close]

BLAST of IVF0001247 vs. NCBI nr
Match: KAA0047036.1 (uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (552), Expect = 1.06e-69
Identity = 103/145 (71.03%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN---- 60
           MPPPLAP M INHN+ QYEGD    LDD+QVTLL E RRVGHG VR+RG G+AYQN    
Sbjct: 21  MPPPLAPLMAINHNNNQYEGDGLDDLDDDQVTLLVEPRRVGHGVVRRRGHGKAYQNIQRR 80

Query: 61  ---------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 120
                     NM AIKFKIPKFF KTDPE+YIQWEKEVENVF CHNFS+ Q VRFCV+KF
Sbjct: 81  TQQETPQLERNMAAIKFKIPKFFGKTDPEEYIQWEKEVENVFACHNFSNEQKVRFCVAKF 140

Query: 121 KDYAQTWWDKLMSRRRRNLEVPVDS 132
           KDY QTWW KLMSRR+RNLE P+DS
Sbjct: 141 KDYDQTWWHKLMSRRKRNLEAPIDS 165

[Close]

BLAST of IVF0001247 vs. NCBI nr
Match: KAA0040916.1 (uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 1.07e-51
Identity = 83/114 (72.81%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 37  LRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEK 96
           L   G+G VR+RGR RAYQN              NMGAIKFKIPKFF KTDPE+YIQWEK
Sbjct: 5   LATYGYGVVRRRGRRRAYQNIQRRAQQEAPRFECNMGAIKFKIPKFFRKTDPEEYIQWEK 64

Query: 97  EVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK 137
           EVENVF CHNF D Q VRFCVSKFKDYA TWWDKLMSRRRRNLE P+DS YEFK
Sbjct: 65  EVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRNLEAPIDSCYEFK 118

[Close]

BLAST of IVF0001247 vs. NCBI nr
Match: KAA0038045.1 (uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK20558.1 uncharacterized protein E5676_scaffold237G001470 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 1.90e-51
Identity = 86/126 (68.25%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN---- 60
           MPPP APPM INHND Q EGD   GLDD+QVTLL E RR GH  VR++GRGRAYQN    
Sbjct: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60

Query: 61  ---------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKF 113
                     N+ AIKFKI KFF KTDPE+YIQWEKEVENVF CHNF++ Q VRFCV KF
Sbjct: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120

The following BLAST results are available for this feature:

BLAST of IVF0001247 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHG3	1.6e-57	74.67	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TK52	1.6e-57	74.67	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TYI0	2.1e-52	71.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T993	1.2e-39	68.25	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CFQ1	2.0e-39	72.81	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of IVF0001247 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09709.1	1.22e-75	74.67	uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]	[more]
KAA0043652.1	2.34e-75	74.67	uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]	[more]
KAA0047036.1	1.06e-69	71.03	uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]	[more]
KAA0040916.1	1.07e-51	72.81	uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]	[more]
KAA0038045.1	1.90e-51	68.25	uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of IVF0001247 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 46..137
None	No IPR available	PANTHER	PTHR35046:SF6	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 46..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001247.2	IVF0001247.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding