IVF0001211 (gene) Melon (IVF77) v1

Overview


Name	IVF0001211
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr04: 12101902 .. 12102132 (+)
RNA-Seq Expression	IVF0001211
Synteny	IVF0001211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCGTTCAACCGTCGTGGCTGCCCCATTTCCGATCTCCTTCCTGTCTCACACGCCGCAGATCTGCCGGCCGTCTCTGTCCCTACCGCAAGCCACGCTCCATGTCGACCGGTGCAGCCCAAAAGAAATCGCAGACAGTCGCCACCGCCGTGTGAGTTTTCGTCTGTCATTGTGCCACCCAAGACCAGCTCATCGTGTGTGCGCTGGGTGCTTCGAGCCGAAGGCTGA

mRNA sequence

ATGCCAGCGTTCAACCGTCGTGGCTGCCCCATTTCCGATCTCCTTCCTGTCTCACACGCCGCAGATCTGCCGGCCGTCTCTGTCCCTACCGCAAGCCACGCTCCATGTCGACCGGTGCAGCCCAAAAGAAATCGCAGACAGTCGCCACCGCCGTGTGAGTTTTCGTCTGTCATTGTGCCACCCAAGACCAGCTCATCGTGTGTGCGCTGGGTGCTTCGAGCCGAAGGCTGA

Coding sequence (CDS)

ATGCCAGCGTTCAACCGTCGTGGCTGCCCCATTTCCGATCTCCTTCCTGTCTCACACGCCGCAGATCTGCCGGCCGTCTCTGTCCCTACCGCAAGCCACGCTCCATGTCGACCGGTGCAGCCCAAAAGAAATCGCAGACAGTCGCCACCGCCGTGTGAGTTTTCGTCTGTCATTGTGCCACCCAAGACCAGCTCATCGTGTGTGCGCTGGGTGCTTCGAGCCGAAGGCTGA

Protein sequence

MPAFNRRGCPISDLLPVSHAADLPAVSVPTASHAPCRPVQPKRNRRQSPPPCEFSSVIVPPKTSSSCVRWVLRAEG

Homology

[Close]

BLAST of IVF0001211 vs. ExPASy TrEMBL
Match: A0A5A7UC10 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004470 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 17   VSHAA-DLPAVSVPTASHAPCRPVQPKRNRRQSPPPCEFSSVIVPPKTS 65
            +SH+A DLP VSV TASHAPCRPVQ +RN RQS  PCEFSSV+ P KTS
Sbjct: 1079 LSHSAVDLPTVSVFTASHAPCRPVQLERNCRQSLSPCEFSSVVTPAKTS 1127

[Close]

BLAST of IVF0001211 vs. NCBI nr
Match: KAA0051967.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.35e-10
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 17   VSHAA-DLPAVSVPTASHAPCRPVQPKRNRRQSPPPCEFSSVIVPPKTS 64
            +SH+A DLP VSV TASHAPCRPVQ +RN RQS  PCEFSSV+ P KTS
Sbjct: 1079 LSHSAVDLPTVSVFTASHAPCRPVQLERNCRQSLSPCEFSSVVTPAKTS 1127

The following BLAST results are available for this feature:

BLAST of IVF0001211 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0001211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC10	3.8e-08	73.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]

BLAST of IVF0001211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051967.1	1.35e-10	73.47	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0001211 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001211.1	IVF0001211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity