IVF0001193 (gene) Melon (IVF77) v1

Overview
NameIVF0001193
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReactive Intermediate Deaminase A
Locationchr03: 9610263 .. 9610464 (+)
RNA-Seq ExpressionIVF0001193
SyntenyIVF0001193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCGATGGTGGTCGTGGGTTTACGACGGGTTCTAACATTTCGACATTTATTGGAGTCGGGTTGAGTCGACTTTCACGGGTTTAGCTGCAAGCAAGACGAAAATCCTAAGGTCTTCAGTCAGAGGAGCCGACAAGAAGCAAATCCAAGTATGAAGACTTTGAAATGTTTGAAGGAGACGAGCTGGAAGCTCCAATAG

mRNA sequence

ATGGCATCCGATGGTGGTCGTGGGTTTACGACGGGTTCTAACATTTCGACATTTATTGGAGTCGGGTTGAACGAAAATCCTAAGGTCTTCAGTCAGAGGAGCCGACAAGAAGCAAATCCAAGTATGAAGACTTTGAAATGTTTGAAGGAGACGAGCTGGAAGCTCCAATAG

Coding sequence (CDS)

ATGGCATCCGATGGTGGTCGTGGGTTTACGACGGGTTCTAACATTTCGACATTTATTGGAGTCGGGTTGAACGAAAATCCTAAGGTCTTCAGTCAGAGGAGCCGACAAGAAGCAAATCCAAGTATGAAGACTTTGAAATGTTTGAAGGAGACGAGCTGGAAGCTCCAATAG

Protein sequence

MASDGGRGFTTGSNISTFIGVGLNENPKVFSQRSRQEANPSMKTLKCLKETSWKLQ
Homology
[Close]
BLAST of IVF0001193 vs. ExPASy TrEMBL
Match: A0A5D3E5H8 (Reactive Intermediate Deaminase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00600 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 24  NENPKVFSQRSRQEANPSMKTLKCLKETSWKLQ 57
           +ENPK+  QRSRQE NPSM TLK LKETSWKLQ
Sbjct: 73  DENPKISGQRSRQEENPSMNTLKGLKETSWKLQ 105

[Close]
BLAST of IVF0001193 vs. ExPASy TrEMBL
Match: A0A5A7UFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002260 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 24  NENPKVFSQRSRQEANPSMKTLKCLKETSWKLQ 57
           +ENPK+  QRSRQE NPSM TLK LKETSWKLQ
Sbjct: 73  DENPKISGQRSRQEENPSMNTLKGLKETSWKLQ 105

[Close]
BLAST of IVF0001193 vs. NCBI nr
Match: KAA0052379.1 (hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 5.46e-07
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 25  ENPKVFSQRSRQEANPSMKTLKCLKETSWKLQ 56
           ENPK+  QRSRQE NPSM TLK LKETSWKLQ
Sbjct: 74  ENPKISGQRSRQEENPSMNTLKGLKETSWKLQ 105

[Close]
BLAST of IVF0001193 vs. NCBI nr
Match: TYK30860.1 (reactive Intermediate Deaminase A [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 7.81e-07
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 25  ENPKVFSQRSRQEANPSMKTLKCLKETSWKLQ 56
           ENPK+  QRSRQE NPSM TLK LKETSWKLQ
Sbjct: 74  ENPKISGQRSRQEENPSMNTLKGLKETSWKLQ 105

The following BLAST results are available for this feature:
BLAST of IVF0001193 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0001193 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E5H81.5e-0478.79Reactive Intermediate Deaminase A OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UFX31.5e-0478.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0001193 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052379.15.46e-0781.25hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa][more]
TYK30860.17.81e-0781.25reactive Intermediate Deaminase A [Cucumis melo var. makuwa][more]
BLAST of IVF0001193 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001193.1IVF0001193.1mRNA