IVF0001169 (gene) Melon (IVF77) v1

Overview


Name	IVF0001169
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr12: 14888413 .. 14889004 (-)
RNA-Seq Expression	IVF0001169
Synteny	IVF0001169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGACAAAATCCAACCACAAAGAAGGCTTAACCCAACATTGAAGGAAGTTTTCATGAAAGAGGTACTAAAGCTAAAAGATGCCGGAATTATCTACCCCGTCCCAGATAGTACATGGGTAAGTCCAATTCATGTGGTCCTAAAGAAGACCGGGATGACCATTGTAAAGAACGACAAAGGTGAGATGGTTCCGATGCGAATGCGAAATGGATGGAGAATGTGCATAGATTACCGGAAACTCAATGAGGTAACAAAAAAGGATCATTTCCCCTTACCTCCTTGATCAAATGATAGAACGCTTAGTGGGTAGATCATATTTTTGTTTCTTAGATGGATTTTCCGCTTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGTCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACATTGCATGATTAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTAG

mRNA sequence

ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGACAAAATCCAACCACAAAGAAGGCTTAACCCAACATTGAAGGAAGTTTTCATGAAAGAGGTACTAAAGCTAAAAGATGCCGGAATTATCTACCCCGTCCCAGATAGTACATGGGTAAGTCCAATTCATGTGGTCCTAAAGAAGACCGGGATGACCATTGTAAAGAACGACAAAGATGGATTTTCCGCTTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGTCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACATTGCATGATTAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTAG

Coding sequence (CDS)

ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGACAAAATCCAACCACAAAGAAGGCTTAACCCAACATTGAAGGAAGTTTTCATGAAAGAGGTACTAAAGCTAAAAGATGCCGGAATTATCTACCCCGTCCCAGATAGTACATGGGTAAGTCCAATTCATGTGGTCCTAAAGAAGACCGGGATGACCATTGTAAAGAACGACAAAGATGGATTTTCCGCTTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGTCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACATTGCATGATTAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATGTTAG

Protein sequence

MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKTGMTIVKNDKDGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDSFDAC

Homology

[Close]

BLAST of IVF0001169 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 36/103 (34.95%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 42  YPVPDSTWVSPIHVVLKKTGMTIVKNDKDGFSAFYQIPIACEDQKKTTFTCDYGTYAFRR 101
           +P+P+      +  +L K G        D    F+QI +  E   KT F+  +G Y + R
Sbjct: 280 HPIPN------MDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLR 339

Query: 102 MSFGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDSFD 145
           M FGL NAP TFQ CM  I    + K   V++DD  V+  S D
Sbjct: 340 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLD 376

[Close]

BLAST of IVF0001169 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-09
Identity = 34/99 (34.34%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 44  VPDSTWVSPIHVVLKKTGMTIVKNDKDGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMS 103
           +PD   +  +  +L K G        D    F+QI +  E   KT F+   G Y + RM 
Sbjct: 275 IPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMP 334

Query: 104 FGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDS 143
           FGL NAP TFQ CM +I    + K   V++DD  ++  S
Sbjct: 335 FGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTS 373

[Close]

BLAST of IVF0001169 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 36/103 (34.95%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 42  YPVPDSTWVSPIHVVLKKTGMTIVKNDKDGFSAFYQIPIACEDQKKTTFTCDYGTYAFRR 101
           YP+PD      I+  L   G        D  S F+QI +   D  KT F+   G Y F R
Sbjct: 196 YPIPD------INATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLR 255

Query: 102 MSFGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDSFD 145
           + FGL NAP  FQ  +  I  + I K   V++DD  V+ + +D
Sbjct: 256 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYD 292

[Close]

BLAST of IVF0001169 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 30/99 (30.30%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 44  VPDSTWVSPIHVVLKKTGMTIVKNDKDGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMS 103
           +PD   +  I ++L   G        D  S ++QI +A  D++KT+F+ + G Y F R+ 
Sbjct: 251 IPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLP 310

Query: 104 FGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDS 143
           FGL NA   FQ  +  +  + I K   V++DD  ++ ++
Sbjct: 311 FGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSEN 349

[Close]

BLAST of IVF0001169 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 73  SAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCIEVF 132
           S ++Q+ IA  D+ KTT    YG++ FR M FGL NA  TF + M ++  ++++  + V+
Sbjct: 49  SGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVY 108

Query: 133 MDDFTVY 140
           +DD  VY
Sbjct: 109 LDDLVVY 115

[Close]

BLAST of IVF0001169 vs. ExPASy TrEMBL
Match: A0A1U7ZU26 (uncharacterized protein LOC104594034 OS=Nelumbo nucifera OX=4432 GN=LOC104594034 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.7e-52
Identity = 112/197 (56.85%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           MHRI+LE+GAK   +PQR+LNP +KEV MKEVLKL D GIIY + DS WVSPIHVV KKT
Sbjct: 408 MHRILLEDGAKPVREPQRKLNPIMKEVVMKEVLKLLDEGIIYSISDSKWVSPIHVVPKKT 467

Query: 61  GMTIVKNDK--------------------------------------------------- 120
           G+T+VKN                                                     
Sbjct: 468 GVTMVKNQNNELIPMRVQSGWCMVIDFRKLNLATRKDHFPLPFIDQMLERLAGKAFFYFL 527

Query: 121 DGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 147
           DGFS +YQI IA EDQ+KTTFTC +GT+A+RRM FGLCNA GTFQ CMISIFSDFIEKCI
Sbjct: 528 DGFSGYYQIVIAQEDQEKTTFTCPFGTFAYRRMPFGLCNAXGTFQRCMISIFSDFIEKCI 587

[Close]

BLAST of IVF0001169 vs. ExPASy TrEMBL
Match: A0A6J1DXI8 (uncharacterized protein LOC111025486 OS=Momordica charantia OX=3673 GN=LOC111025486 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.7e-52
Identity = 110/195 (56.41%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           MHRI+LE+  K   +PQRRLNPT+KEV MKE+LKL +AGIIYP+ DS WVS IHVV KKT
Sbjct: 338 MHRILLEDETKPTREPQRRLNPTMKEVVMKEILKLLEAGIIYPISDSKWVSLIHVVPKKT 397

Query: 61  GMTIVKNDK--------------------------------------------------- 120
           G+T+V+N                                                     
Sbjct: 398 GITVVRNCNNELVSMRVQNGWRMCIDFRKLNQVTRKDYFPLPFIDQMIERLAGKPFFCFP 457

Query: 121 DGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 145
           DGFS FYQIPIA EDQ+KTTFTC YGTYA+RRMSFGLCNAPGTFQ CM+SIFS++IEKCI
Sbjct: 458 DGFSGFYQIPIAQEDQEKTTFTCSYGTYAYRRMSFGLCNAPGTFQRCMMSIFSEYIEKCI 517

[Close]

BLAST of IVF0001169 vs. ExPASy TrEMBL
Match: A0A6P8DCT8 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.4e-52
Identity = 107/197 (54.31%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 1    MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
            MHRI+LE+ A+ K  PQR+LNPT+KEV MKE+LKL D GIIYP+ DS WVSPIHVV KKT
Sbjct: 923  MHRILLEKDAQPKRDPQRKLNPTMKEVVMKEILKLLDLGIIYPISDSQWVSPIHVVPKKT 982

Query: 61   GMTIVKNDK--------------------------------------------------- 120
            G+T+VKN++                                                   
Sbjct: 983  GLTLVKNERGELVPTRVQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFL 1042

Query: 121  DGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 147
            DG+S +YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQ CM+SIFSD IE CI
Sbjct: 1043 DGYSGYYQIVVAPEDQEKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCI 1102

[Close]

BLAST of IVF0001169 vs. ExPASy TrEMBL
Match: A0A6P8DJV3 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 106/197 (53.81%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 1    MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
            MHRI+LE+ A+ K  PQR+LNPT+KEV MKE+LKL D GIIYP+ DS WVSPIHVV KKT
Sbjct: 878  MHRILLEKDAQPKRDPQRKLNPTMKEVVMKEILKLLDLGIIYPISDSQWVSPIHVVPKKT 937

Query: 61   GMTIVKNDK--------------------------------------------------- 120
            G+T+VKN++                                                   
Sbjct: 938  GLTLVKNERGELVPTRVQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFL 997

Query: 121  DGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 147
            DG+S +YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQ CM+SIFSD IE CI
Sbjct: 998  DGYSGYYQIVVAPEDQEKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCI 1057

[Close]

BLAST of IVF0001169 vs. ExPASy TrEMBL
Match: A0A6P8D4X0 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 106/197 (53.81%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 1    MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
            MHRI+LE+ A+ K  PQR+LNPT+KEV MKE+LKL D GIIYP+ DS WVSPIHVV KKT
Sbjct: 878  MHRILLEKDAQPKRDPQRKLNPTMKEVVMKEILKLLDLGIIYPISDSQWVSPIHVVPKKT 937

Query: 61   GMTIVKNDK--------------------------------------------------- 120
            G+T+VKN++                                                   
Sbjct: 938  GLTLVKNERGELVPTRVQNGWRVCIDYRKLNAATRKDHFPLPFIDQMLERLAGKSYFCFL 997

Query: 121  DGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 147
            DG+S +YQI +A EDQ+KTTFTC +GT+A+RRM FGLC+APGTFQ CM+SIFSD IE CI
Sbjct: 998  DGYSGYYQIVVAPEDQEKTTFTCPFGTFAYRRMPFGLCDAPGTFQRCMMSIFSDMIENCI 1057

[Close]

BLAST of IVF0001169 vs. NCBI nr
Match: XP_022159045.1 (uncharacterized protein LOC111025486 [Momordica charantia])

HSP 1 Score: 213 bits (542), Expect = 1.39e-63
Identity = 110/195 (56.41%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           MHRI+LE+  K   +PQRRLNPT+KEV MKE+LKL +AGIIYP+ DS WVS IHVV KKT
Sbjct: 338 MHRILLEDETKPTREPQRRLNPTMKEVVMKEILKLLEAGIIYPISDSKWVSLIHVVPKKT 397

Query: 61  GMTIVKNDK--------------------------------------------------- 120
           G+T+V+N                                                     
Sbjct: 398 GITVVRNCNNELVSMRVQNGWRMCIDFRKLNQVTRKDYFPLPFIDQMIERLAGKPFFCFP 457

Query: 121 DGFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 144
           DGFS FYQIPIA EDQ+KTTFTC YGTYA+RRMSFGLCNAPGTFQ CM+SIFS++IEKCI
Sbjct: 458 DGFSGFYQIPIAQEDQEKTTFTCSYGTYAYRRMSFGLCNAPGTFQRCMMSIFSEYIEKCI 517

[Close]

BLAST of IVF0001169 vs. NCBI nr
Match: CAA7034301.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 209 bits (531), Expect = 2.46e-63
Identity = 101/174 (58.05%), Postives = 121/174 (69.54%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           +HRI LE+ +K  I+PQRRLNP LKEV  KE+LKL DAGIIYP+ DSTW+SP+H V KK 
Sbjct: 105 IHRIHLEDESKSSIEPQRRLNPNLKEVVKKEILKLLDAGIIYPISDSTWISPVHCVPKKG 164

Query: 61  GMTIVKNDK----------------------------DGFSAFYQIPIACEDQKKTTFTC 120
           G+T++KNDK                            DG+S F+QIPI   DQ+KTTFTC
Sbjct: 165 GITVIKNDKEELIPTRTIVGHRMYVRKIGKPPFYCFLDGYSGFFQIPIHPNDQEKTTFTC 224

Query: 121 DYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDSFDAC 146
            YGT+A+RRM FGLCNAP TFQ CM SIFSD IE+ +EVFMDDF+VYG SF +C
Sbjct: 225 PYGTFAYRRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGASFSSC 278

[Close]

BLAST of IVF0001169 vs. NCBI nr
Match: KYP61768.1 (Retrovirus-related Pol polyprotein from transposon 297 family, partial [Cajanus cajan])

HSP 1 Score: 202 bits (515), Expect = 3.25e-62
Identity = 102/197 (51.78%), Postives = 122/197 (61.93%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           MHRI+LE+GAK   QPQRRLNP + +V  KEV KL  AGIIYP+ DS WVSP+ VV KKT
Sbjct: 22  MHRILLEDGAKPVRQPQRRLNPVILDVVKKEVTKLLQAGIIYPISDSQWVSPVQVVPKKT 81

Query: 61  GMTIVKNDKD-------------------------------------------------- 120
           G+T+VKN+KD                                                  
Sbjct: 82  GLTVVKNEKDELIPTSVQNSWRVCIDYRRLNQATRKDHFPLPFIDQMLESLAGKSHYYFL 141

Query: 121 -GFSAFYQIPIACEDQKKTTFTCDYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCI 146
            GFS ++ I IA +DQ+KTTFTC +GT+A++RM FGLCNAP TFQ CM+SIFSDF+E CI
Sbjct: 142 DGFSGYFHIHIALKDQEKTTFTCPFGTFAYKRMPFGLCNAPSTFQQCMLSIFSDFLENCI 201

[Close]

BLAST of IVF0001169 vs. NCBI nr
Match: CAA7035511.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 209 bits (531), Expect = 3.41e-62
Identity = 101/174 (58.05%), Postives = 121/174 (69.54%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           +HRI LE+ +K  I+PQRRLNP LKEV  KE+LKL DAGIIYP+ DSTW+SP+H V KK 
Sbjct: 105 IHRIHLEDESKSSIEPQRRLNPNLKEVVKKEILKLLDAGIIYPISDSTWISPVHCVPKKG 164

Query: 61  GMTIVKNDK----------------------------DGFSAFYQIPIACEDQKKTTFTC 120
           G+T++KNDK                            DG+S F+QIPI   DQ+KTTFTC
Sbjct: 165 GITVIKNDKEELIPTRTIVGHRMYVRKIGKPPFYCFLDGYSGFFQIPIHPNDQEKTTFTC 224

Query: 121 DYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDSFDAC 146
            YGT+A+RRM FGLCNAP TFQ CM SIFSD IE+ +EVFMDDF+VYG SF +C
Sbjct: 225 PYGTFAYRRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGASFSSC 278

[Close]

BLAST of IVF0001169 vs. NCBI nr
Match: CAA7056081.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 209 bits (531), Expect = 4.71e-62
Identity = 101/174 (58.05%), Postives = 121/174 (69.54%), Query Frame = 0


Query: 1   MHRIILEEGAKDKIQPQRRLNPTLKEVFMKEVLKLKDAGIIYPVPDSTWVSPIHVVLKKT 60
           +HRI LE+ +K  I+PQRRLNP LKEV  KE+LKL DAGIIYP+ DSTW+SP+H V KK 
Sbjct: 105 IHRIHLEDESKSSIEPQRRLNPNLKEVVKKEILKLLDAGIIYPISDSTWISPVHCVPKKG 164

Query: 61  GMTIVKNDK----------------------------DGFSAFYQIPIACEDQKKTTFTC 120
           G+T++KNDK                            DG+S F+QIPI   DQ+KTTFTC
Sbjct: 165 GITVIKNDKEELIPTRTIVGHRMYVRKIGKPPFYCFLDGYSGFFQIPIHPNDQEKTTFTC 224

Query: 121 DYGTYAFRRMSFGLCNAPGTFQHCMISIFSDFIEKCIEVFMDDFTVYGDSFDAC 146
            YGT+A+RRM FGLCNAP TFQ CM SIFSD IE+ +EVFMDDF+VYG SF +C
Sbjct: 225 PYGTFAYRRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGASFSSC 278

The following BLAST results are available for this feature:

BLAST of IVF0001169 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.2e-09	34.95	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	6.4e-09	34.34	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.4e-08	34.95	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.6e-07	30.30	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P31843	1.6e-07	38.81	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]

BLAST of IVF0001169 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U7ZU26	3.7e-52	56.85	uncharacterized protein LOC104594034 OS=Nelumbo nucifera OX=4432 GN=LOC104594034...	[more]
A0A6J1DXI8	3.7e-52	56.41	uncharacterized protein LOC111025486 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6P8DCT8	6.4e-52	54.31	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1	[more]
A0A6P8DJV3	2.4e-51	53.81	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1	[more]
A0A6P8D4X0	2.4e-51	53.81	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1	[more]

BLAST of IVF0001169 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159045.1	1.39e-63	56.41	uncharacterized protein LOC111025486 [Momordica charantia]	[more]
CAA7034301.1	2.46e-63	58.05	unnamed protein product [Microthlaspi erraticum]	[more]
KYP61768.1	3.25e-62	51.78	Retrovirus-related Pol polyprotein from transposon 297 family, partial [Cajanus ...	[more]
CAA7035511.1	3.41e-62	58.05	unnamed protein product [Microthlaspi erraticum]	[more]
CAA7056081.1	4.71e-62	58.05	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of IVF0001169 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..108 e-value: 2.1E-27 score: 97.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 67..138
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 67..138
None	No IPR available	CDD	cd01647	RT_LTR	coord: 39..144 e-value: 1.03303E-34 score: 116.926
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 67..142 e-value: 1.4E-8 score: 34.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001169.1	IVF0001169.1	mRNA