IVF0001103 (gene) Melon (IVF77) v1

Overview
NameIVF0001103
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptioncullin 1
Locationchr06: 19101703 .. 19102270 (+)
RNA-Seq ExpressionIVF0001103
SyntenyIVF0001103
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGGTGTTGTTTGTTGTGTGCATCCCTCTTCCGCTTGTGGATGAGAAAAAGAAAGTCATTGGAGATGTTGACAAGGATCGAAGGTATGTGACTTGACCATGAGATACGTGAACTTGAAGTAAGGACATGCATCGTTCTGAGCTTTGTAAGAGATCAAGAAATCTTCGAAAATCGTTTAGAGCTTTGATAGACATAGGGTATGTGACTTCCATCAACGCTCGGTGCAATTCATAACATTTGTATACTTCTACCCTTTTTTGAAGTGTATTTTTGTGTGTACGCTCTCAAGGAAGCTTTTGAAGTTTTTTGCAATAAGGGTGTTGCTAGAAGTTCTAGTATAGAATTTCTTGTTACCTTTTGTGATAACATCCTTAAGAAAAGTGAGAGAGAGAAGTTGAGTGATAAAAAAATCAAGGAGACACTTGAGAAGGTAATTTTTCTATTTATTAATCATTTGAAGTTCATTTAGTGTTGTAACTTTGGATTTCATATGATTTAAAAATACAGGTTGTGAAGTTGTTAGCATACAGACAAAGATCTATTTGCTGAATTCTATAGGTGA

mRNA sequence

ATGAATGTGGTGTTGTTTGTTGTGTGCATCCCTCTTCCGCTTGTGGATGAGAAAAAGAAAGTCATTGGAGATGTTGACAAGGATCGAAGGTATGAAGCTTTTGAAGTTTTTTGCAATAAGGGTGTTGCTAGAAGTTCTAGTATAGAATTTCTTGTTACCTTTTGTGATAACATCCTTAAGAAAAGTGAGAGAGAGAAGTTGAGTGATAAAAAAATCAAGGAGACACTTGAGAAGCATACAGACAAAGATCTATTTGCTGAATTCTATAGGTGA

Coding sequence (CDS)

ATGAATGTGGTGTTGTTTGTTGTGTGCATCCCTCTTCCGCTTGTGGATGAGAAAAAGAAAGTCATTGGAGATGTTGACAAGGATCGAAGGTATGAAGCTTTTGAAGTTTTTTGCAATAAGGGTGTTGCTAGAAGTTCTAGTATAGAATTTCTTGTTACCTTTTGTGATAACATCCTTAAGAAAAGTGAGAGAGAGAAGTTGAGTGATAAAAAAATCAAGGAGACACTTGAGAAGCATACAGACAAAGATCTATTTGCTGAATTCTATAGGTGA

Protein sequence

MNVVLFVVCIPLPLVDEKKKVIGDVDKDRRYEAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKHTDKDLFAEFYR
Homology
BLAST of IVF0001103 vs. ExPASy Swiss-Prot
Match: Q5ZC88 (Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-15
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFEVFCNKGV+ SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVSGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVRLLAYISDKDL 434

BLAST of IVF0001103 vs. ExPASy Swiss-Prot
Match: Q94AH6 (Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

BLAST of IVF0001103 vs. ExPASy Swiss-Prot
Match: P0CH31 (Putative cullin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g43140 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-11
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILK-KSEREKLSDKKIKETLEK-------HTDKD 91
           EAFEVFCNK VA +SS E L T+CDNILK +   EKLSD+  + TLEK        +DKD
Sbjct: 374 EAFEVFCNKTVAGASSAEILATYCDNILKTRGGSEKLSDEATEITLEKVVNLLVYISDKD 433

BLAST of IVF0001103 vs. ExPASy Swiss-Prot
Match: Q9SRZ0 (Cullin-2 OS=Arabidopsis thaliana OX=3702 GN=CUL2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-09
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSER-EKLSDKKIKETLEK-------HTDKD 91
           EAFEVFCNK VA  SS E L T+CDNILK     EKL ++ ++ TLEK        +DKD
Sbjct: 372 EAFEVFCNKTVAGVSSAEILATYCDNILKTGGGIEKLENEDLELTLEKVVKLLVYISDKD 431

BLAST of IVF0001103 vs. ExPASy TrEMBL
Match: A0A172MAB9 (Cullin 1 OS=Vitis pseudoreticulata OX=231512 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-14
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFEVFCNKGVA SSS E LVTFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLVTFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

BLAST of IVF0001103 vs. ExPASy TrEMBL
Match: A0A1S6YFU7 (Cullin 1 OS=Apostasia odorata OX=280455 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDL 434

BLAST of IVF0001103 vs. ExPASy TrEMBL
Match: A0A2I0B578 (Cullin-1 OS=Apostasia shenzhenica OX=1088818 GN=CUL1 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDL 434

BLAST of IVF0001103 vs. ExPASy TrEMBL
Match: A0A6J1KEU4 (cullin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111494366 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

BLAST of IVF0001103 vs. ExPASy TrEMBL
Match: A0A1U7WKX4 (cullin-1 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104229650 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

BLAST of IVF0001103 vs. NCBI nr
Match: GAU10667.1 (hypothetical protein TSUD_426200, partial [Trifolium subterraneum])

HSP 1 Score: 80.9 bits (198), Expect = 8.15e-18
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0

Query: 32 EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKH-------TDKDL 90
          EAFE+FCNKGVA SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 9  EAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 68

BLAST of IVF0001103 vs. NCBI nr
Match: QHO02016.1 (Cullin [Arachis hypogaea])

HSP 1 Score: 84.0 bits (206), Expect = 4.09e-17
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 19  KKVIGDVDKDRRY---EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKET 78
           +KVI   DK   Y   EAFEVFCNKGVA SSS E L TFCDNILKK   EKLSD+ I+ET
Sbjct: 106 QKVIELHDKYLAYALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEET 165

Query: 79  LEKH-----TDKDLFAEFYR 90
           LEK      +DKDLFA+FYR
Sbjct: 166 LEKKLLAYMSDKDLFAKFYR 185

BLAST of IVF0001103 vs. NCBI nr
Match: KAG8483254.1 (hypothetical protein CXB51_022272 [Gossypium anomalum])

HSP 1 Score: 84.7 bits (208), Expect = 8.63e-17
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 17  EKKKVIGDVDKDRRYEAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETL 76
           +KK V+G + +    EAFEVFCNKGV  SSS E L TFCDNILKK   EKLSD+ I+ETL
Sbjct: 148 DKKDVVG-MQEQALKEAFEVFCNKGVVGSSSAELLATFCDNILKKGGSEKLSDEAIEETL 207

Query: 77  EKH-------TDKDLFAEFYR 90
           EK        +DKDLFAEFYR
Sbjct: 208 EKVVKLLAYISDKDLFAEFYR 227

BLAST of IVF0001103 vs. NCBI nr
Match: KAF5930280.1 (hypothetical protein HYC85_031153 [Camellia sinensis])

HSP 1 Score: 80.9 bits (198), Expect = 1.41e-16
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKH-------TDKDL 90
           EAFEVFCNKGV  SSS E L TFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 120 EAFEVFCNKGVGGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 179

BLAST of IVF0001103 vs. NCBI nr
Match: ANC90259.1 (cullin 1 [Vitis pseudoreticulata])

HSP 1 Score: 84.0 bits (206), Expect = 1.89e-16
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEKH-------TDKDL 90
           EAFEVFCNKGVA SSS E LVTFCDNILKK   EKLSD+ I+ETLEK        +DKDL
Sbjct: 375 EAFEVFCNKGVAGSSSAELLVTFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDL 434

BLAST of IVF0001103 vs. TAIR 10
Match: AT4G02570.1 (cullin 1 )

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

BLAST of IVF0001103 vs. TAIR 10
Match: AT4G02570.2 (cullin 1 )

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

BLAST of IVF0001103 vs. TAIR 10
Match: AT4G02570.3 (cullin 1 )

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

BLAST of IVF0001103 vs. TAIR 10
Match: AT4G02570.4 (cullin 1 )

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILKKSEREKLSDKKIKETLEK-------HTDKDL 91
           EAFE+FCNK VA SSS E L TFCDNILKK   EKLSD+ I++TLEK        +DKDL
Sbjct: 369 EAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDL 428

BLAST of IVF0001103 vs. TAIR 10
Match: AT1G43140.1 (Cullin family protein )

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-12
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 32  EAFEVFCNKGVARSSSIEFLVTFCDNILK-KSEREKLSDKKIKETLEK-------HTDKD 91
           EAFEVFCNK VA +SS E L T+CDNILK +   EKLSD+  + TLEK        +DKD
Sbjct: 374 EAFEVFCNKTVAGASSAEILATYCDNILKTRGGSEKLSDEATEITLEKVVNLLVYISDKD 433

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q5ZC882.2e-1568.18Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1[more]
Q94AH61.1e-1466.67Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1[more]
P0CH313.2e-1161.19Putative cullin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g43140 PE=3... [more]
Q9SRZ03.0e-0956.72Cullin-2 OS=Arabidopsis thaliana OX=3702 GN=CUL2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A172MAB95.6e-1472.73Cullin 1 OS=Vitis pseudoreticulata OX=231512 PE=2 SV=1[more]
A0A1S6YFU71.2e-1371.21Cullin 1 OS=Apostasia odorata OX=280455 PE=2 SV=1[more]
A0A2I0B5781.2e-1371.21Cullin-1 OS=Apostasia shenzhenica OX=1088818 GN=CUL1 PE=3 SV=1[more]
A0A6J1KEU41.6e-1371.21cullin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111494366 PE=3 SV=1[more]
A0A1U7WKX41.6e-1371.21cullin-1 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104229650 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
GAU10667.18.15e-1868.18hypothetical protein TSUD_426200, partial [Trifolium subterraneum][more]
QHO02016.14.09e-1765.00Cullin [Arachis hypogaea][more]
KAG8483254.18.63e-1761.73hypothetical protein CXB51_022272 [Gossypium anomalum][more]
KAF5930280.11.41e-1669.70hypothetical protein HYC85_031153 [Camellia sinensis][more]
ANC90259.11.89e-1672.73cullin 1 [Vitis pseudoreticulata][more]
Match NameE-valueIdentityDescription
AT4G02570.17.7e-1666.67cullin 1 [more]
AT4G02570.27.7e-1666.67cullin 1 [more]
AT4G02570.37.7e-1666.67cullin 1 [more]
AT4G02570.47.7e-1666.67cullin 1 [more]
AT1G43140.12.3e-1261.19Cullin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11932:SF133CULLIN 3Bcoord: 32..90
coord: 8..31
IPR045093CullinPANTHERPTHR11932CULLINcoord: 8..31
coord: 32..90
IPR036317Cullin homology domain superfamilySUPERFAMILY75632Cullin homology domaincoord: 45..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001103.2IVF0001103.2mRNA