Homology
BLAST of IVF0001077 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 137.9 bits (346), Expect = 2.2e-31
Identity = 75/231 (32.47%), Postives = 117/231 (50.65%), Query Frame = 0
Query: 112 SRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEK 171
++ +G+ +E + +++GW+ +S GRLTL KA LSS+P + +ST P S+ +++
Sbjct: 9 NKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQ 68
Query: 172 HWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSL 231
R FLWG + +K+ HLV W SPK+ GGLG+ K N+AL+ K WR E NSL
Sbjct: 69 LSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 128
Query: 232 WKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIK-KWKDWFESKISWIPNDGSSLSFWHS 291
W + KY D + S S W +I +D + WIP DG + FW
Sbjct: 129 WTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTD 188
Query: 292 KWQNNIPLSHQIPRLYALSNLQSATVKEVWDQSTDGWN---INPRRPLNER 339
+W + PL ++ ++ + K++W GW+ I+P N R
Sbjct: 189 RWVSGKPLL-ELDNGERPTDCDTVVAKDLWIPGR-GWDFAKIDPYTTNNTR 237
BLAST of IVF0001077 vs. ExPASy Swiss-Prot
Match:
O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 4.7e-10
Identity = 52/209 (24.88%), Postives = 88/209 (42.11%), Query Frame = 0
Query: 32 LFADDVLIFVEDNEKYLSNLQMALSLFEKASGLTFNHSKSTISPINISADRTDQIARFFG 91
LFADD+++++E+ NL +S F K SG N KS N + QI
Sbjct: 699 LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELP 758
Query: 92 FQTKFLPFNYLGVPLGGNPRS--RSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLS 151
F YLG+ L + + + + ++ I + N WK S GR+ ++K ++
Sbjct: 759 FTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAIL 818
Query: 152 SLPTYQLST--FKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGIS 211
Y+ + K P++ + E+EK F+W Q + I + + GG+ +
Sbjct: 819 PKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRARIAKSILSQKNKAGGITLP 878
Query: 212 KLKDTNQALLCK--WLWRYHNESNSLWKK 235
K +A + K W W Y N W +
Sbjct: 879 DFKLYYKATVTKTAWYW-YQNRDIDQWNR 901
BLAST of IVF0001077 vs. ExPASy Swiss-Prot
Match:
P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 37/144 (25.69%), Postives = 65/144 (45.14%), Query Frame = 0
Query: 150 SLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNW-RICTSPKELGGLGISK 209
+LP Y +S F+ + K++ +F W E+K+ V W ++C S ++ GGLG
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 210 LKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIKKWK 269
L NQALL K +R ++ ++L + + ++Y + VG S W +I +
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSY--AWRSIIHGR 121
Query: 270 DWFESKISWIPNDGSSLSFWHSKW 293
+ + DG W +W
Sbjct: 122 ELLSRGLLRTIGDGIHTKVWLDRW 143
BLAST of IVF0001077 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 673.7 bits (1737), Expect = 4.0e-190
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLS
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 1599
BLAST of IVF0001077 vs. ExPASy TrEMBL
Match:
A0A5A7TQA8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00190 PE=4 SV=1)
HSP 1 Score: 673.7 bits (1737), Expect = 4.0e-190
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467
BLAST of IVF0001077 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 669.5 bits (1726), Expect = 7.6e-189
Identity = 311/339 (91.74%), Postives = 324/339 (95.58%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLS
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 1599
BLAST of IVF0001077 vs. ExPASy TrEMBL
Match:
A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)
HSP 1 Score: 669.5 bits (1726), Expect = 7.6e-189
Identity = 311/339 (91.74%), Postives = 324/339 (95.58%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467
BLAST of IVF0001077 vs. ExPASy TrEMBL
Match:
A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)
HSP 1 Score: 663.7 bits (1711), Expect = 4.2e-187
Identity = 308/339 (90.86%), Postives = 322/339 (94.99%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGGLGISK+KDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISW+ NDGSSLSFWHSKW NNIPLS
Sbjct: 448 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWHNNIPLSL 507
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
Q PRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 508 QFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNERE 546
BLAST of IVF0001077 vs. NCBI nr
Match:
KAA0045532.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 671 bits (1730), Expect = 1.13e-237
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467
BLAST of IVF0001077 vs. NCBI nr
Match:
TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 666 bits (1719), Expect = 5.28e-236
Identity = 311/339 (91.74%), Postives = 324/339 (95.58%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467
BLAST of IVF0001077 vs. NCBI nr
Match:
KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 660 bits (1704), Expect = 3.22e-232
Identity = 308/339 (90.86%), Postives = 322/339 (94.99%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGGLGISK+KDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISW+ NDGSSLSFWHSKW NNIPLS
Sbjct: 448 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWHNNIPLSL 507
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
Q PRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 508 QFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNERE 546
BLAST of IVF0001077 vs. NCBI nr
Match:
TYK10887.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 640 bits (1651), Expect = 3.36e-231
Identity = 304/319 (95.30%), Postives = 308/319 (96.55%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYL+NLQMAL LFEK
Sbjct: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLNNLQMALYLFEK 60
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN KSTI+PINISADRTDQIAR FGFQTKFLP NYLGVPLGGNPRSRSFWGQTI
Sbjct: 61 ASGLTFNLLKSTINPINISADRTDQIARLFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQI K GRLTLLKASLSSLPTYQLSTFKA VSVYKEIEKHWRDFLWGG
Sbjct: 121 ECIHKKLNGWKYSQIFKGGRLTLLKASLSSLPTYQLSTFKALVSVYKEIEKHWRDFLWGG 180
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NWRICTSPKEL GLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 181 SEDKQNAHLINWRICTSPKELEGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S KSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH
Sbjct: 241 TKNHQGDIPVVGRNSSAKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
Query: 301 QIPRLYALSNLQSATVKEV 319
QIPRLYALSNLQSATVKEV
Sbjct: 301 QIPRLYALSNLQSATVKEV 319
BLAST of IVF0001077 vs. NCBI nr
Match:
KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 671 bits (1730), Expect = 5.31e-224
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0
Query: 1 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320
Query: 61 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380
Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440
Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
SEDKQNAHL+NW ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500
Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
TKNHQGDIP+VGRN S SPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLS
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560
Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 1599
BLAST of IVF0001077 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 70.9 bits (172), Expect = 2.3e-12
Identity = 47/184 (25.54%), Postives = 79/184 (42.93%), Query Frame = 0
Query: 150 SLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKL 209
+LPTY ++ F P +V K+I DF W ++ + H W + K GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 210 KDTNQALLCKWLWRYHNESNSLWKKCIDAKY-TKNHQGDIPIVGRNCSVKSPWNAIKKWK 269
+ N ALL K +WR + SL K ++Y K+ + P+ R V W +I +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFV---WKSIHASQ 121
Query: 270 DWFESKISWIPNDGSSLSFWHSKWQNNIPLS-----HQIPRLYALSNLQSATVKEVWDQS 328
+ + +G + W KW ++ P S ++P S V ++ D+S
Sbjct: 122 EILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDES 181
BLAST of IVF0001077 vs. TAIR 10
Match:
ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 58.9 bits (141), Expect = 9.1e-09
Identity = 37/144 (25.69%), Postives = 65/144 (45.14%), Query Frame = 0
Query: 150 SLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNW-RICTSPKELGGLGISK 209
+LP Y +S F+ + K++ +F W E+K+ V W ++C S ++ GGLG
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 210 LKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIKKWK 269
L NQALL K +R ++ ++L + + ++Y + VG S W +I +
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSY--AWRSIIHGR 121
Query: 270 DWFESKISWIPNDGSSLSFWHSKW 293
+ + DG W +W
Sbjct: 122 ELLSRGLLRTIGDGIHTKVWLDRW 143
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 2.2e-31 | 32.47 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
O00370 | 4.7e-10 | 24.88 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | [more] |
P93295 | 1.3e-07 | 25.69 | Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7US62 | 4.0e-190 | 92.04 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TQA8 | 4.0e-190 | 92.04 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3CA17 | 7.6e-189 | 91.74 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3DZM5 | 7.6e-189 | 91.74 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7UTI6 | 4.2e-187 | 90.86 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAA0045532.1 | 1.13e-237 | 92.04 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK28859.1 | 5.28e-236 | 91.74 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0056839.1 | 3.22e-232 | 90.86 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
TYK10887.1 | 3.36e-231 | 95.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0057507.1 | 5.31e-224 | 92.04 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT4G29090.1 | 2.3e-12 | 25.54 | Ribonuclease H-like superfamily protein | [more] |
ATMG00310.1 | 9.1e-09 | 25.69 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |