IVF0001077 (gene) Melon (IVF77) v1

Overview
NameIVF0001077
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr11: 25348774 .. 25349802 (-)
RNA-Seq ExpressionIVF0001077
SyntenyIVF0001077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTACTTAAGCAGATTGCTGTCCCACCTGGAAACAAAAGGAGCTATCAAAGGGGTCTCTTTCAACAACTGCTGCAACATATCTCACCTTCTATTTGCGGACGATGTACTCATCTTTGTCGAAGACAATGAAAAGTACTTAAGCAATTTACAGATGGCGCTCTCTCTCTTTGAGAAAGCTTCTGGGCTGACTTTCAACCATTCGAAGTCAACAATAAGCCCCATAAACATATCTGCTGATAGAACGGATCAGATAGCTAGATTTTTCGGGTTTCAAACTAAATTCCTACCATTCAACTACCTAGGAGTTCCATTGGGAGGAAACCCAAGATCCAGATCTTTTTGGGGACAAACAATCGAATGTATCCATAAAAAACTAAACGGATGGAAATACTCACAAATTTCCAAACGAGGAAGACTTACCCTTCTAAAAGCTTCTCTCTCGAGCCTCCCCACCTATCAGCTTTCTACTTTCAAAGCTCCTGTCTCTGTTTACAAAGAAATTGAAAAACATTGGAGAGATTTCTTGTGGGGAGGAAGTGAGGACAAACAAAATGCTCACCTGGTCAATTGGAGAATTTGTACCTCCCCTAAGGAGTTGGGAGGCCTGGGAATTAGCAAGCTAAAGGACACAAACCAAGCCCTCCTATGCAAATGGCTATGGAGATACCACAATGAGTCAAATTCTCTTTGGAAAAAGTGTATAGATGCTAAATACACAAAAAACCATCAAGGCGACATACCAATAGTAGGTAGAAATTGTAGTGTAAAATCTCCCTGGAATGCAATCAAAAAATGGAAAGACTGGTTTGAATCAAAAATCAGCTGGATTCCCAACGATGGCTCCTCCCTATCCTTTTGGCACAGCAAATGGCAAAACAATATTCCTCTCTCCCACCAAATTCCTAGACTCTATGCTCTCTCGAATCTACAATCAGCTACTGTAAAGGAAGTTTGGGACCAAAGTACCGATGGATGGAACATTAACCCAAGACGACCTTTAAATGAGAGGGAAAACCATATTTGA

mRNA sequence

ATGGATTACTTAAGCAGATTGCTGTCCCACCTGGAAACAAAAGGAGCTATCAAAGGGGTCTCTTTCAACAACTGCTGCAACATATCTCACCTTCTATTTGCGGACGATGTACTCATCTTTGTCGAAGACAATGAAAAGTACTTAAGCAATTTACAGATGGCGCTCTCTCTCTTTGAGAAAGCTTCTGGGCTGACTTTCAACCATTCGAAGTCAACAATAAGCCCCATAAACATATCTGCTGATAGAACGGATCAGATAGCTAGATTTTTCGGGTTTCAAACTAAATTCCTACCATTCAACTACCTAGGAGTTCCATTGGGAGGAAACCCAAGATCCAGATCTTTTTGGGGACAAACAATCGAATGTATCCATAAAAAACTAAACGGATGGAAATACTCACAAATTTCCAAACGAGGAAGACTTACCCTTCTAAAAGCTTCTCTCTCGAGCCTCCCCACCTATCAGCTTTCTACTTTCAAAGCTCCTGTCTCTGTTTACAAAGAAATTGAAAAACATTGGAGAGATTTCTTGTGGGGAGGAAGTGAGGACAAACAAAATGCTCACCTGGTCAATTGGAGAATTTGTACCTCCCCTAAGGAGTTGGGAGGCCTGGGAATTAGCAAGCTAAAGGACACAAACCAAGCCCTCCTATGCAAATGGCTATGGAGATACCACAATGAGTCAAATTCTCTTTGGAAAAAGTGTATAGATGCTAAATACACAAAAAACCATCAAGGCGACATACCAATAGTAGGTAGAAATTGTAGTGTAAAATCTCCCTGGAATGCAATCAAAAAATGGAAAGACTGGTTTGAATCAAAAATCAGCTGGATTCCCAACGATGGCTCCTCCCTATCCTTTTGGCACAGCAAATGGCAAAACAATATTCCTCTCTCCCACCAAATTCCTAGACTCTATGCTCTCTCGAATCTACAATCAGCTACTGTAAAGGAAGTTTGGGACCAAAGTACCGATGGATGGAACATTAACCCAAGACGACCTTTAAATGAGAGGGAAAACCATATTTGA

Coding sequence (CDS)

ATGGATTACTTAAGCAGATTGCTGTCCCACCTGGAAACAAAAGGAGCTATCAAAGGGGTCTCTTTCAACAACTGCTGCAACATATCTCACCTTCTATTTGCGGACGATGTACTCATCTTTGTCGAAGACAATGAAAAGTACTTAAGCAATTTACAGATGGCGCTCTCTCTCTTTGAGAAAGCTTCTGGGCTGACTTTCAACCATTCGAAGTCAACAATAAGCCCCATAAACATATCTGCTGATAGAACGGATCAGATAGCTAGATTTTTCGGGTTTCAAACTAAATTCCTACCATTCAACTACCTAGGAGTTCCATTGGGAGGAAACCCAAGATCCAGATCTTTTTGGGGACAAACAATCGAATGTATCCATAAAAAACTAAACGGATGGAAATACTCACAAATTTCCAAACGAGGAAGACTTACCCTTCTAAAAGCTTCTCTCTCGAGCCTCCCCACCTATCAGCTTTCTACTTTCAAAGCTCCTGTCTCTGTTTACAAAGAAATTGAAAAACATTGGAGAGATTTCTTGTGGGGAGGAAGTGAGGACAAACAAAATGCTCACCTGGTCAATTGGAGAATTTGTACCTCCCCTAAGGAGTTGGGAGGCCTGGGAATTAGCAAGCTAAAGGACACAAACCAAGCCCTCCTATGCAAATGGCTATGGAGATACCACAATGAGTCAAATTCTCTTTGGAAAAAGTGTATAGATGCTAAATACACAAAAAACCATCAAGGCGACATACCAATAGTAGGTAGAAATTGTAGTGTAAAATCTCCCTGGAATGCAATCAAAAAATGGAAAGACTGGTTTGAATCAAAAATCAGCTGGATTCCCAACGATGGCTCCTCCCTATCCTTTTGGCACAGCAAATGGCAAAACAATATTCCTCTCTCCCACCAAATTCCTAGACTCTATGCTCTCTCGAATCTACAATCAGCTACTGTAAAGGAAGTTTGGGACCAAAGTACCGATGGATGGAACATTAACCCAAGACGACCTTTAAATGAGAGGGAAAACCATATTTGA

Protein sequence

MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEKASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSHQIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERENHI
Homology
BLAST of IVF0001077 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-31
Identity = 75/231 (32.47%), Postives = 117/231 (50.65%), Query Frame = 0

Query: 112 SRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEK 171
           ++  +G+ +E +  +++GW+   +S  GRLTL KA LSS+P + +ST   P S+   +++
Sbjct: 9   NKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQ 68

Query: 172 HWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSL 231
             R FLWG + +K+  HLV W    SPK+ GGLG+   K  N+AL+ K  WR   E NSL
Sbjct: 69  LSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 128

Query: 232 WKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIK-KWKDWFESKISWIPNDGSSLSFWHS 291
           W   +  KY      D   +    S  S W +I    +D     + WIP DG  + FW  
Sbjct: 129 WTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTD 188

Query: 292 KWQNNIPLSHQIPRLYALSNLQSATVKEVWDQSTDGWN---INPRRPLNER 339
           +W +  PL  ++      ++  +   K++W     GW+   I+P    N R
Sbjct: 189 RWVSGKPLL-ELDNGERPTDCDTVVAKDLWIPGR-GWDFAKIDPYTTNNTR 237

BLAST of IVF0001077 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.7e-10
Identity = 52/209 (24.88%), Postives = 88/209 (42.11%), Query Frame = 0

Query: 32  LFADDVLIFVEDNEKYLSNLQMALSLFEKASGLTFNHSKSTISPINISADRTDQIARFFG 91
           LFADD+++++E+      NL   +S F K SG   N  KS     N +     QI     
Sbjct: 699 LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELP 758

Query: 92  FQTKFLPFNYLGVPLGGNPRS--RSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLS 151
           F        YLG+ L  + +   +  +   ++ I +  N WK    S  GR+ ++K ++ 
Sbjct: 759 FTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAIL 818

Query: 152 SLPTYQLST--FKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGIS 211
               Y+ +    K P++ + E+EK    F+W      Q    +   I +   + GG+ + 
Sbjct: 819 PKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRARIAKSILSQKNKAGGITLP 878

Query: 212 KLKDTNQALLCK--WLWRYHNESNSLWKK 235
             K   +A + K  W W Y N     W +
Sbjct: 879 DFKLYYKATVTKTAWYW-YQNRDIDQWNR 901

BLAST of IVF0001077 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 37/144 (25.69%), Postives = 65/144 (45.14%), Query Frame = 0

Query: 150 SLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNW-RICTSPKELGGLGISK 209
           +LP Y +S F+    + K++     +F W   E+K+    V W ++C S ++ GGLG   
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 210 LKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIKKWK 269
           L   NQALL K  +R  ++ ++L  + + ++Y  +       VG   S    W +I   +
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSY--AWRSIIHGR 121

Query: 270 DWFESKISWIPNDGSSLSFWHSKW 293
           +     +     DG     W  +W
Sbjct: 122 ELLSRGLLRTIGDGIHTKVWLDRW 143

BLAST of IVF0001077 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.0e-190
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0

Query: 1    MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHL+NW ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
            TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLS 
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
            QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 1599

BLAST of IVF0001077 vs. ExPASy TrEMBL
Match: A0A5A7TQA8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00190 PE=4 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.0e-190
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS 
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
           QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467

BLAST of IVF0001077 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 7.6e-189
Identity = 311/339 (91.74%), Postives = 324/339 (95.58%), Query Frame = 0

Query: 1    MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHL+NW ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
            TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLS 
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
            QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 1599

BLAST of IVF0001077 vs. ExPASy TrEMBL
Match: A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 7.6e-189
Identity = 311/339 (91.74%), Postives = 324/339 (95.58%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS 
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
           QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467

BLAST of IVF0001077 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 4.2e-187
Identity = 308/339 (90.86%), Postives = 322/339 (94.99%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NW ICTSPKELGGLGISK+KDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISW+ NDGSSLSFWHSKW NNIPLS 
Sbjct: 448 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWHNNIPLSL 507

Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 340
           Q PRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 508 QFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNERE 546

BLAST of IVF0001077 vs. NCBI nr
Match: KAA0045532.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 671 bits (1730), Expect = 1.13e-237
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS 
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
           QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467

BLAST of IVF0001077 vs. NCBI nr
Match: TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 666 bits (1719), Expect = 5.28e-236
Identity = 311/339 (91.74%), Postives = 324/339 (95.58%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 129 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 188

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 189 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 248

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 249 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 308

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NW ICTSPKELGG+GISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 309 SEDKQNAHLINWNICTSPKELGGMGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 368

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISWIPNDGSSLSFWHSKW NNIPLS 
Sbjct: 369 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWIPNDGSSLSFWHSKWHNNIPLSL 428

Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
           QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 429 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 467

BLAST of IVF0001077 vs. NCBI nr
Match: KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 660 bits (1704), Expect = 3.22e-232
Identity = 308/339 (90.86%), Postives = 322/339 (94.99%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLE+KGAIKGVSFNN CNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 208 MDYLSRLLSHLESKGAIKGVSFNNYCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 267

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 268 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWSQTI 327

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 328 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 387

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NW ICTSPKELGGLGISK+KDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 388 SEDKQNAHLINWNICTSPKELGGLGISKVKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 447

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISW+ NDGSSLSFWHSKW NNIPLS 
Sbjct: 448 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWMANDGSSLSFWHSKWHNNIPLSL 507

Query: 301 QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
           Q PRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 508 QFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLNERE 546

BLAST of IVF0001077 vs. NCBI nr
Match: TYK10887.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 640 bits (1651), Expect = 3.36e-231
Identity = 304/319 (95.30%), Postives = 308/319 (96.55%), Query Frame = 0

Query: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
           MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYL+NLQMAL LFEK
Sbjct: 1   MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLNNLQMALYLFEK 60

Query: 61  ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
           ASGLTFN  KSTI+PINISADRTDQIAR FGFQTKFLP NYLGVPLGGNPRSRSFWGQTI
Sbjct: 61  ASGLTFNLLKSTINPINISADRTDQIARLFGFQTKFLPVNYLGVPLGGNPRSRSFWGQTI 120

Query: 121 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
           ECIHKKLNGWKYSQI K GRLTLLKASLSSLPTYQLSTFKA VSVYKEIEKHWRDFLWGG
Sbjct: 121 ECIHKKLNGWKYSQIFKGGRLTLLKASLSSLPTYQLSTFKALVSVYKEIEKHWRDFLWGG 180

Query: 181 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
           SEDKQNAHL+NWRICTSPKEL GLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 181 SEDKQNAHLINWRICTSPKELEGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240

Query: 241 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
           TKNHQGDIP+VGRN S KSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH
Sbjct: 241 TKNHQGDIPVVGRNSSAKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300

Query: 301 QIPRLYALSNLQSATVKEV 319
           QIPRLYALSNLQSATVKEV
Sbjct: 301 QIPRLYALSNLQSATVKEV 319

BLAST of IVF0001077 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 671 bits (1730), Expect = 5.31e-224
Identity = 312/339 (92.04%), Postives = 325/339 (95.87%), Query Frame = 0

Query: 1    MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 60
            MDYLSRLLSHLE+KGAIKGVSFNNCCNISHLLFADDVLIFVEDNE+YL+NLQMAL+LFEK
Sbjct: 1261 MDYLSRLLSHLESKGAIKGVSFNNCCNISHLLFADDVLIFVEDNERYLNNLQMALTLFEK 1320

Query: 61   ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 120
            ASGLTFN+SKSTISPINISA RTDQIA FFGFQTKFLP NYLGVPLGGNPRSRSFW QTI
Sbjct: 1321 ASGLTFNNSKSTISPINISAGRTDQIASFFGFQTKFLPVNYLGVPLGGNPRSRSFWDQTI 1380

Query: 121  ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 180
            ECIHKKLNGWKYSQISK GRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG
Sbjct: 1381 ECIHKKLNGWKYSQISKGGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 1440

Query: 181  SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 240
            SEDKQNAHL+NW ICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY
Sbjct: 1441 SEDKQNAHLINWNICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 1500

Query: 241  TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKWQNNIPLSH 300
            TKNHQGDIP+VGRN S  SPWNAIKKWKDW+ESKISW+PNDGSSLSFWHSKW NNIPLS 
Sbjct: 1501 TKNHQGDIPVVGRNSSANSPWNAIKKWKDWYESKISWLPNDGSSLSFWHSKWHNNIPLSL 1560

Query: 301  QIPRLYALSNLQSATVKEVWDQSTDGWNINPRRPLNERE 339
            QIPRLYALSN+QSATVKE+WDQ +D WN+ PRRPLNERE
Sbjct: 1561 QIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLNERE 1599

BLAST of IVF0001077 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-12
Identity = 47/184 (25.54%), Postives = 79/184 (42.93%), Query Frame = 0

Query: 150 SLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGLGISKL 209
           +LPTY ++ F  P +V K+I     DF W   ++ +  H   W   +  K  GG+G   +
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 210 KDTNQALLCKWLWRYHNESNSLWKKCIDAKY-TKNHQGDIPIVGRNCSVKSPWNAIKKWK 269
           +  N ALL K +WR  +   SL  K   ++Y  K+   + P+  R   V   W +I   +
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFV---WKSIHASQ 121

Query: 270 DWFESKISWIPNDGSSLSFWHSKWQNNIPLS-----HQIPRLYALSNLQSATVKEVWDQS 328
           +        +  +G  +  W  KW ++ P S      ++P     S      V ++ D+S
Sbjct: 122 EILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDES 181

BLAST of IVF0001077 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 58.9 bits (141), Expect = 9.1e-09
Identity = 37/144 (25.69%), Postives = 65/144 (45.14%), Query Frame = 0

Query: 150 SLPTYQLSTFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNW-RICTSPKELGGLGISK 209
           +LP Y +S F+    + K++     +F W   E+K+    V W ++C S ++ GGLG   
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 210 LKDTNQALLCKWLWRYHNESNSLWKKCIDAKYTKNHQGDIPIVGRNCSVKSPWNAIKKWK 269
           L   NQALL K  +R  ++ ++L  + + ++Y  +       VG   S    W +I   +
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSY--AWRSIIHGR 121

Query: 270 DWFESKISWIPNDGSSLSFWHSKW 293
           +     +     DG     W  +W
Sbjct: 122 ELLSRGLLRTIGDGIHTKVWLDRW 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F62.2e-3132.47Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
O003704.7e-1024.88LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1[more]
P932951.3e-0725.69Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7US624.0e-19092.04LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TQA84.0e-19092.04LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CA177.6e-18991.74LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DZM57.6e-18991.74LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UTI64.2e-18790.86LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0045532.11.13e-23792.04LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK28859.15.28e-23691.74LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0056839.13.22e-23290.86LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... [more]
TYK10887.13.36e-23195.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0057507.15.31e-22492.04LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT4G29090.12.3e-1225.54Ribonuclease H-like superfamily protein [more]
ATMG00310.19.1e-0925.69RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 26..106
e-value: 1.4E-7
score: 31.3
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..94
score: 8.855118
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 13..331
NoneNo IPR availablePANTHERPTHR33116:SF33OS01G0885550 PROTEINcoord: 13..331

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001077.2IVF0001077.2mRNA