IVF0001060 (gene) Melon (IVF77) v1

Overview
NameIVF0001060
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDUF4283 domain-containing protein
Locationchr09: 703855 .. 704088 (-)
RNA-Seq ExpressionIVF0001060
SyntenyIVF0001060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTTCCCCTGATACACTAGACTGGATAAAAAAGTGCTTCAAGTCTCTGTTGGACACATCCAATGCAAAGCACTTCTTCACTGAAAGGAGACAAGAGGATTATTGCATGTGGGTAGGGAAAATAAAAAATAAGAGCAAATATGGTACCATAGCTAAGATCTTCAAAATCGACAACAAAGACGGAAAGTGTAGTATTCTTGTTCCTGAAGGCTCTGATGAATTTGGTTAG

mRNA sequence

ATGGATATTTCCCCTGATACACTAGACTGGATAAAAAAGTGCTTCAAGTCTCTGTTGGACACATCCAATGCAAAGCACTTCTTCACTGAAAGGAGACAAGAGGATTATTGCATGTGGGTAGGGAAAATAAAAAATAAGAGCAAATATGGTACCATAGCTAAGATCTTCAAAATCGACAACAAAGACGGAAAGTGTAGTATTCTTGTTCCTGAAGGCTCTGATGAATTTGGTTAG

Coding sequence (CDS)

ATGGATATTTCCCCTGATACACTAGACTGGATAAAAAAGTGCTTCAAGTCTCTGTTGGACACATCCAATGCAAAGCACTTCTTCACTGAAAGGAGACAAGAGGATTATTGCATGTGGGTAGGGAAAATAAAAAATAAGAGCAAATATGGTACCATAGCTAAGATCTTCAAAATCGACAACAAAGACGGAAAGTGTAGTATTCTTGTTCCTGAAGGCTCTGATGAATTTGGTTAG

Protein sequence

MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDNKDGKCSILVPEGSDEFG
Homology
BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5D3CPN2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00870 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDISP+TLDWI+KCFK+LL+TSN KH F ERRQEDYCMWV K KNKSK G+ A+IF+IDN
Sbjct: 1  MDISPETLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60

Query: 61 KDGKCSILVPEGSDEFG 78
          K  KCS+LVPEG D+FG
Sbjct: 61 KGRKCSVLVPEGIDKFG 77

BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5A7U199 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00620 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDISPD LDWI+KCFK+LL+TSN KH F ERRQEDYCMWV K KNKSK G+  +IF+IDN
Sbjct: 1  MDISPDILDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTTEIFRIDN 60

Query: 61 KDGKCSILVPEGSDEFG 78
          K  KCS+LVPEG D+FG
Sbjct: 61 KGRKCSVLVPEGIDKFG 77

BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDI+PDTL WI+ CFK LLDTS  KHFF ERR ED CMWV K KNKSK    A+IF+IDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73

Query: 61 KDGKCSILVPEGSDEFG 78
          K  KCSILVPEG D FG
Sbjct: 74 KGRKCSILVPEGPDSFG 90

BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDI+PDTL WI+ CFK LLDTS  KHFF ERR ED CMWV K KNKSK    A+IF+IDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73

Query: 61 KDGKCSILVPEGSDEFG 78
          K  KCSILVPEG D FG
Sbjct: 74 KGRKCSILVPEGPDSFG 90

BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDI+PDTL WI+ CFK LLDTS  KHFF ERR ED CMWV K KNKSK    A+IF+IDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73

Query: 61 KDGKCSILVPEGSDEFG 78
          K  KCSILVPEG D FG
Sbjct: 74 KGRKCSILVPEGPDSFG 90

BLAST of IVF0001060 vs. NCBI nr
Match: TYK13823.1 (hypothetical protein E5676_scaffold488G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 1.54e-35
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDISP+TLDWI+KCFK+LL+TSN KH F ERRQEDYCMWV K KNKSK G+ A+IF+IDN
Sbjct: 1  MDISPETLDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTAEIFRIDN 60

Query: 61 KDGKCSILVPEGSDEFG 77
          K  KCS+LVPEG D+FG
Sbjct: 61 KGRKCSVLVPEGIDKFG 77

BLAST of IVF0001060 vs. NCBI nr
Match: KAA0047997.1 (hypothetical protein E6C27_scaffold385G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 8.07e-33
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDISPD LDWI+KCFK+LL+TSN KH F ERRQEDYCMWV K KNKSK G+  +IF+IDN
Sbjct: 1  MDISPDILDWIRKCFKALLETSNTKHLFNERRQEDYCMWVRKTKNKSKSGSTTEIFRIDN 60

Query: 61 KDGKCSILVPEGSDEFG 77
          K  KCS+LVPEG D+FG
Sbjct: 61 KGRKCSVLVPEGIDKFG 77

BLAST of IVF0001060 vs. NCBI nr
Match: KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 4.14e-29
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDI+PDTL WI+ CFK LLDTS  KHFF ERR ED CMWV K KNKSK    A+IF+IDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73

Query: 61 KDGKCSILVPEGSDEFG 77
          K  KCSILVPEG D FG
Sbjct: 74 KGRKCSILVPEGPDSFG 90

BLAST of IVF0001060 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 4.17e-29
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDI+PDTL WI+ CFK LLDTS  KHFF ERR ED CMWV K KNKSK    A+IF+IDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73

Query: 61 KDGKCSILVPEGSDEFG 77
          K  KCSILVPEG D FG
Sbjct: 74 KGRKCSILVPEGPDSFG 90

BLAST of IVF0001060 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 4.17e-29
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDN 60
          MDI+PDTL WI+ CFK LLDTS  KHFF ERR ED CMWV K KNKSK    A+IF+IDN
Sbjct: 14 MDITPDTLAWIRNCFKDLLDTSTTKHFFAERRMEDNCMWVRKTKNKSKTSITAEIFRIDN 73

Query: 61 KDGKCSILVPEGSDEFG 77
          K  KCSILVPEG D FG
Sbjct: 74 KGRKCSILVPEGPDSFG 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CPN29.9e-2875.32DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U1994.9e-2774.03DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BKT83.0e-2471.43LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7US623.0e-2471.43LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CA173.0e-2471.43LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
TYK13823.11.54e-3575.32hypothetical protein E5676_scaffold488G00870 [Cucumis melo var. makuwa][more]
KAA0047997.18.07e-3374.03hypothetical protein E6C27_scaffold385G00620 [Cucumis melo var. makuwa][more]
KAA0056838.14.14e-2971.43LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... [more]
TYK08190.14.17e-2971.43LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0057507.14.17e-2971.43LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0001060.2IVF0001060.2mRNA