IVF0001060 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATATTTCCCCTGATACACTAGACTGGATAAAAAAGTGCTTCAAGTCTCTGTTGGACACATCCAATGCAAAGCACTTCTTCACTGAAAGGAGACAAGAGGATTATTGCATGTGGGTAGGGAAAATAAAAAATAAGAGCAAATATGGTACCATAGCTAAGATCTTCAAAATCGACAACAAAGACGGAAAGTGTAGTATTCTTGTTCCTGAAGGCTCTGATGAATTTGGTTAG ATGGATATTTCCCCTGATACACTAGACTGGATAAAAAAGTGCTTCAAGTCTCTGTTGGACACATCCAATGCAAAGCACTTCTTCACTGAAAGGAGACAAGAGGATTATTGCATGTGGGTAGGGAAAATAAAAAATAAGAGCAAATATGGTACCATAGCTAAGATCTTCAAAATCGACAACAAAGACGGAAAGTGTAGTATTCTTGTTCCTGAAGGCTCTGATGAATTTGGTTAG ATGGATATTTCCCCTGATACACTAGACTGGATAAAAAAGTGCTTCAAGTCTCTGTTGGACACATCCAATGCAAAGCACTTCTTCACTGAAAGGAGACAAGAGGATTATTGCATGTGGGTAGGGAAAATAAAAAATAAGAGCAAATATGGTACCATAGCTAAGATCTTCAAAATCGACAACAAAGACGGAAAGTGTAGTATTCTTGTTCCTGAAGGCTCTGATGAATTTGGTTAG MDISPDTLDWIKKCFKSLLDTSNAKHFFTERRQEDYCMWVGKIKNKSKYGTIAKIFKIDNKDGKCSILVPEGSDEFG Homology
BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5D3CPN2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00870 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28 Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5A7U199 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00620 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27 Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 0
BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24 Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0
BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24 Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0
BLAST of IVF0001060 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24 Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0
BLAST of IVF0001060 vs. NCBI nr
Match: TYK13823.1 (hypothetical protein E5676_scaffold488G00870 [Cucumis melo var. makuwa]) HSP 1 Score: 130 bits (328), Expect = 1.54e-35 Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0
BLAST of IVF0001060 vs. NCBI nr
Match: KAA0047997.1 (hypothetical protein E6C27_scaffold385G00620 [Cucumis melo var. makuwa]) HSP 1 Score: 128 bits (322), Expect = 8.07e-33 Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 0
BLAST of IVF0001060 vs. NCBI nr
Match: KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 119 bits (298), Expect = 4.14e-29 Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0
BLAST of IVF0001060 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 119 bits (298), Expect = 4.17e-29 Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0
BLAST of IVF0001060 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 119 bits (298), Expect = 4.17e-29 Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|