IVF0001029 (gene) Melon (IVF77) v1

Overview


Name	IVF0001029
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	chr04: 25730799 .. 25733748 (+)
RNA-Seq Expression	IVF0001029
Synteny	IVF0001029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCACTCTCTCCACTGCATCTCTCCGATCCCCATCTCCTTCTTCTTCTTCTTCTTCTTATCCATCAAATTTCTCCCATTCCCTCAAACCCACTCCCCTCCGTTTCCCCTTTTCTTTCGCCCCCACAAATCTCTCTCTTCGCCTTATTCATCACCGCCCAATCTCCGCCGTCGCTGTTCCGGAGAAAGTGTCAGAAATCGGCGATGTCATCTCCAAGTTGACTCTCGAAGAGGCACGAACCCTTGTCGATTACCTCCAAGAGAAACTCGGCGTTTCCGCTGCCTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGTGATGATGCGGCTGCTGCTGTCGAGGAGAAAACGGAGTTTGATGTTGTTATTGAGGAAGTGCCGAGTAATGCAAGGATTGCGGTTATTAAAGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAGGAGTTGATTGAAGGTTTGCCGAAGAAGTTTAAGGAAGGAATTTCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGTGCGAAGATTGCTATTGTTTGATTTTGCTGGTTAGTTTCTTCAATTCTTAAGGTTTACAATGTAGGCATTCTGGTGGAACTAGAGTTGGGGTTTATTATTATTATTTTTTTTTATCATTAACTGATGAAGAATTTTGTTGATATTCTGCTTACGAATGCCTTGTTGTTCATGAATTGCTACGGCTGTGGTTACATCCTCTGTTCTGTTGTTTTTGCTTGCTTATAACGTGTTTGTCAAAATGCCAACATGAACTTTCCTTAGGCATTCTCATGAAATTTTTCTTTGTTTTTTTCAATTGTTAATTGATGGATAATTTTATTAGACAATGAGATCAAAACTCTGGCTTGAGAAATTTCATCAAGTCTAAGCCATATATAATGGGAGGAGTGAGGTTTATCAAGAAATTGGTAGTAGCTAGTACACATTCTTCCGAAAATTTCATAGGTACCCTTTCTCGAACAAAAGAGACCGAGCAACATTAAGGAGATGCTAACGTATGTGTTCAAACCATAGAGTTTTGTTCAGGTTGTCCAACAACCGATAGCTGATGACAACACCTTGAGATTGGAAAATGACCAACATCAAGGAGATGCTAATTACCAGAATGAAATTGTTTGATAGAAGCCCTATCAACTTAGAGAAAATGAGGAACGGTGAGAATTAGCCATTGACAAAGGCAGTGTTTTGAAAAGCCCTCTTGGAGGGATCTAGCACCTTCCCTTGGAAAGGCAAGCTCAAAAATAAGGCACACCTCTAGGCGTATTTCTTTTATCAACTAAAAGAATCAAGTTTACTAAGCCTATATGAAAAAAATACTTTGCGGGTTTTTTTTCTTCCATATTTTAACTTCACCAATGCTTTCTCTTTTTAATCTAATATTTTTAGGAAAAAAAAAAAGAAAACCGGCAGCCCTTGCGCCTTGTGCATTTAAAAACACTGCACAAAGGTTAAAAAGAAAAGGTAACGGTTATTAGCATACGACCCCTAAATGTCACAATGAATCAACTTAGAAGTATTAGCCAAAGGACACTAAACAAGACGTGGAAGTATCTATCTTAGAGGAATCAAATGTTTGTTATTCAAATTATTCAAAGGGTAGCTAAGACAAGCATACCAGTACCAAGTATCGGAAGAAACAAGATTAGTAGTGTAAAAACTCAAAACAGTGGCACCAAAAGTATGAGAAATGTATGCCAAATCTTAGTTTTTGCATATTATCATCAAAGAGAACTTGTCTAAAAGGAGAACTAATCACCCTCAAGTGGAACCAAAATAGGTAAATTTGTAGTTAAGCCCTGATGTAGATGAGATTTAAGCAAAATGATGGAATGAACGGTTACGGATACTAATATGGGGTGGATAAATCTCACCCGTAAAATACTTGGCACACCCAAAACGGGATGCAATGTTGCAAAATCATCTCCATTAACTTTAAAGTGGATAGGAATTAACAAAATTTTGGCGAATAGTTTACGTTAGATGTTATATTAATTTTACTTTCATCTACTAGTTAAGCTTTTGGATCAATCGGTGATTTAAAATGCTCTTCAGAATGTCTTGGGTTCAAGCTTCTGCAATGTTGTTTTCTCCCCAATTTAAATTAATTTCCATTTGTTTGACTCTTCTTCAAATTCCAAGCTCATAAATGAGTGAAAGTGTTGAATATTATATTAAATTTACTTTTACCAACTAGGTTAAATTTTAGGTCAATCACTTGTTTAAGAGTTTATGTTTCTATATGAAATAAATTTATCGTGGTCATGCACTAAACTTTTCTATAAGTTTGATTGAGTTGACATATGGAGAACCACGTTTTACACTAACAAATATGATGAGAATAATCGAACAATCAAAATCATGCTAGATTTCTTTCATTTGAAATCAAAGCTATTTTTGGAATAAACAAAACATAATCAGAATAAGTGAAGAAAATTTGCTATGATTTCTATTTGTTTCAAGGTTTCCTATATCCATCAATTAATTATTCTGAAAATGCTATTCATTATAACTACATTTTTTAGAATAAGTATATACTTAATTATTTTGAATTTAATTGGATTATAAAAACTCTTTTGTTTATTACCAAATTTTCAACCAACAGTTTGGACTATAACCAACCCAATCCAACGGGCTTTTAAACAACAACGGCCCACATCGAGCCTCGAGTTAAAAAGCCCAAACGTTAAGCTATAAAACTCCCCGAGGCGAAAGGGTTTCTTCGTTGTATCAAATGGAAATTCTCAAACCCTAATCTGAGAACCACAGGTCGGCGACAAGTCGCCTTTTCCTTTCGCCGCCACCTCCTTTACTATCGGTTAAACATTTTTTCATTCTATTTTCGTTTTTTATGTTATTCCGGCGAGGATGATTATTGCTTTATATTTCTGAC

mRNA sequence

ATGTCTTCCACTCTCTCCACTGCATCTCTCCGATCCCCATCTCCTTCTTCTTCTTCTTCTTCTTATCCATCAAATTTCTCCCATTCCCTCAAACCCACTCCCCTCCGTTTCCCCTTTTCTTTCGCCCCCACAAATCTCTCTCTTCGCCTTATTCATCACCGCCCAATCTCCGCCGTCGCTGTTCCGGAGAAAGTGTCAGAAATCGGCGATGTCATCTCCAAGTTGACTCTCGAAGAGGCACGAACCCTTGTCGATTACCTCCAAGAGAAACTCGGCGTTTCCGCTGCCTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGTGATGATGCGGCTGCTGCTGTCGAGGAGAAAACGGAGTTTGATGTTGTTATTGAGGAAGTGCCGAGTAATGCAAGGATTGCGGTTATTAAAGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAGGAGTTGATTGAAGGTTTGCCGAAGAAGTTTAAGGAAGGAATTTCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGTGCGAAGATTGCTATTGTTTGATTTTGCTGTTTGGACTATAACCAACCCAATCCAACGGGCTTTTAAACAACAACGGCCCACATCGAGCCTCGAGTTAAAAAGCCCAAACGTTAAGCTATAAAACTCCCCGAGGCGAAAGGGTTTCTTCGTTGTATCAAATGGAAATTCTCAAACCCTAATCTGAGAACCACAGGTCGGCGACAAGTCGCCTTTTCCTTTCGCCGCCACCTCCTTTACTATCGGTTAAACATTTTTTCATTCTATTTTCGTTTTTTATGTTATTCCGGCGAGGATGATTATTGCTTTATATTTCTGAC

Coding sequence (CDS)

ATGTCTTCCACTCTCTCCACTGCATCTCTCCGATCCCCATCTCCTTCTTCTTCTTCTTCTTCTTATCCATCAAATTTCTCCCATTCCCTCAAACCCACTCCCCTCCGTTTCCCCTTTTCTTTCGCCCCCACAAATCTCTCTCTTCGCCTTATTCATCACCGCCCAATCTCCGCCGTCGCTGTTCCGGAGAAAGTGTCAGAAATCGGCGATGTCATCTCCAAGTTGACTCTCGAAGAGGCACGAACCCTTGTCGATTACCTCCAAGAGAAACTCGGCGTTTCCGCTGCCTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGTGATGATGCGGCTGCTGCTGTCGAGGAGAAAACGGAGTTTGATGTTGTTATTGAGGAAGTGCCGAGTAATGCAAGGATTGCGGTTATTAAAGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAGGAGTTGATTGAAGGTTTGCCGAAGAAGTTTAAGGAAGGAATTTCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGTGCGAAGATTGCTATTGTTTGA

Protein sequence

MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

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BLAST of IVF0001029 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-52
Identity = 133/195 (68.21%), Postives = 154/195 (78.97%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTP---LRFPFSFAPTNLSLRLIHHRPIS 60
           M+STLST +LRSPSPS++SS      +H+  P P   L FP    P     R    RP++
Sbjct: 1   MASTLSTITLRSPSPSTASS------THASIPFPKKALEFPIR-TPKLHHRRATFLRPLA 60

Query: 61  AVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAA 120
           AV  PEKV ++GD IS LTL +A+ LV+YLQ+KLGV+AASFAPAAVA APGAAA   +A 
Sbjct: 61  AVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAP 120

Query: 121 AAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 180
           A VEEKTEFDVVI+EVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAE
Sbjct: 121 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAE 180

Query: 181 DAKKQLEEAGAKIAI 193
           DAKKQLEEAGAK++I
Sbjct: 181 DAKKQLEEAGAKVSI 185

[Close]

BLAST of IVF0001029 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-51
Identity = 131/195 (67.18%), Postives = 154/195 (78.97%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTP---LRFPFSFAPTNLSLRLIHHRPIS 60
           M+STLST +LRSPSPS+++S      +H+  P P   L FP    P   + R    RP++
Sbjct: 1   MASTLSTITLRSPSPSTATS------THASIPFPKKTLEFPIR-TPKLQNRRATFLRPLA 60

Query: 61  AVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAA 120
           AV  PEKV ++GD IS LTL +A+ LV+YLQ+KLGV+AASFAPAAV  APGAAA   +A 
Sbjct: 61  AVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAP 120

Query: 121 AAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 180
           A VEEKTEFDVVI+EVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAE
Sbjct: 121 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAE 180

Query: 181 DAKKQLEEAGAKIAI 193
           DAKKQLEEAGAK++I
Sbjct: 181 DAKKQLEEAGAKVSI 185

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BLAST of IVF0001029 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-49
Identity = 124/196 (63.27%), Postives = 150/196 (76.53%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSL---RLIHHRPIS 60
           M++T + A+L  P    S +S+P++ +    P PL+FPF      +SL   R    RPI+
Sbjct: 1   MAATTTMATLNLP----SLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIA 60

Query: 61  AVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAA 120
           AV  PEK+ ++G  +S LTLEEAR LVD+LQ+KLGVSAASFAPAA   APGA A   DAA
Sbjct: 61  AVEAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPA---DAA 120

Query: 121 AAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 180
            AVEEKTEFDV I+EVPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AE
Sbjct: 121 PAVEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAE 180

Query: 181 DAKKQLEEAGAKIAIV 194
           DAKKQLE+AGAK++IV
Sbjct: 181 DAKKQLEDAGAKVSIV 189

[Close]

BLAST of IVF0001029 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-47
Identity = 128/193 (66.32%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 2   SSTLSTA-SLRSPSPSSSSSSYPSNFSHSL-KPTPLRFPFSFAPTNLSLRLIHHRPISAV 61
           S+TLS A ++RS SP +S+S++     H L KPT + FPF  + ++ S R I+ RPISAV
Sbjct: 3   STTLSIATTIRSSSPLTSASTH-----HFLSKPTAIEFPFRLSSSS-SHRAINLRPISAV 62

Query: 62  AVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAA 121
             PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   AAA 
Sbjct: 63  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAV 122

Query: 122 VEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 181
           VEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+A
Sbjct: 123 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 182

Query: 182 KKQLEEAGAKIAI 193
           KK LEEAGAK++I
Sbjct: 183 KKTLEEAGAKVSI 186

[Close]

BLAST of IVF0001029 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.1e-44
Identity = 124/197 (62.94%), Postives = 145/197 (73.60%), Query Frame = 0


Query: 2   SSTLSTASLRSPSPSSSSSSYPSNFSHSLKP---TPLRFPFSF---APTNLSLRLIHHRP 61
           S+TLS A+      +  SSSYP+  S +  P   T + FP  F   + + L+ R  H RP
Sbjct: 3   STTLSIAT------TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRP 62

Query: 62  ISAVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDD 121
           I+AV  PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   
Sbjct: 63  IAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--- 122

Query: 122 AAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEE 181
           AAA VEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+E
Sbjct: 123 AAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDE 182

Query: 182 AEDAKKQLEEAGAKIAI 193
           AE+AKK LEEAGAK++I
Sbjct: 183 AEEAKKTLEEAGAKVSI 190

[Close]

BLAST of IVF0001029 vs. ExPASy TrEMBL
Match: A0A5A7UJJ4 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00330 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.6e-89
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 194
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of IVF0001029 vs. ExPASy TrEMBL
Match: A0A1S3B8B3 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487096 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.6e-89
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 194
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of IVF0001029 vs. ExPASy TrEMBL
Match: A0A0A0LHZ4 (Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSSTLSTASLR  SPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA
Sbjct: 1   MSSTLSTASLR--SPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPA   VAPG AAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 194
           KQLEEAGAKI+IV
Sbjct: 181 KQLEEAGAKISIV 191

[Close]

BLAST of IVF0001029 vs. ExPASy TrEMBL
Match: A0A6J1J1D9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481837 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-74
Identity = 171/193 (88.60%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSS LSTASLR   PS SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA A
Sbjct: 1   MSSALSTASLR--LPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAA+GGDD AAAV
Sbjct: 61  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDD-AAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 194
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 190

[Close]

BLAST of IVF0001029 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.1e-74
Identity = 171/193 (88.60%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSS LSTASLR   PS SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA A
Sbjct: 1   MSSALSTASLR--FPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAAAGGDD AAAV
Sbjct: 61  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDD-AAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 194
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 190

[Close]

BLAST of IVF0001029 vs. NCBI nr
Match: XP_008443526.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053661.1 50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK00831.1 50S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 338 bits (868), Expect = 1.88e-116
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 193
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of IVF0001029 vs. NCBI nr
Match: XP_004141094.1 (50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN59676.1 hypothetical protein Csa_002198 [Cucumis sativus])

HSP 1 Score: 322 bits (824), Expect = 8.89e-110
Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSSTLSTASLRSP  SSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA
Sbjct: 1   MSSTLSTASLRSP--SSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPA   VAPG AAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 193
           KQLEEAGAKI+IV
Sbjct: 181 KQLEEAGAKISIV 191

[Close]

BLAST of IVF0001029 vs. NCBI nr
Match: XP_038903222.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 318 bits (816), Expect = 1.47e-108
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSSTLSTASLRSP  SSS SSYPSNFSHSLKPTPL FPFSF+ TNLSLRL+HHRPISAVA
Sbjct: 1   MSSTLSTASLRSP--SSSLSSYPSNFSHSLKPTPLNFPFSFSSTNLSLRLVHHRPISAVA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKVSEIGDVIS+LTLEEARTLVDYLQEKLGVSAASFAPA VAVAPGAAAGGDDAAAAV
Sbjct: 61  VPEKVSEIGDVISQLTLEEARTLVDYLQEKLGVSAASFAPAVVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 193
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 191

[Close]

BLAST of IVF0001029 vs. NCBI nr
Match: XP_022983181.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 291 bits (746), Expect = 6.56e-98
Identity = 171/193 (88.60%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSS LSTASLR P  S SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA A
Sbjct: 1   MSSALSTASLRLP--SCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAA+GGDDAAA V
Sbjct: 61  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDDAAA-V 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 193
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 190

[Close]

BLAST of IVF0001029 vs. NCBI nr
Match: XP_022934872.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 291 bits (745), Expect = 9.31e-98
Identity = 171/193 (88.60%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60
           MSS LSTASLR P  S SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA A
Sbjct: 1   MSSALSTASLRFP--SCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAA 60

Query: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAAAGGDDAAA V
Sbjct: 61  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAA-V 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 193
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 190

[Close]

BLAST of IVF0001029 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 128/193 (66.32%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 2   SSTLSTA-SLRSPSPSSSSSSYPSNFSHSL-KPTPLRFPFSFAPTNLSLRLIHHRPISAV 61
           S+TLS A ++RS SP +S+S++     H L KPT + FPF  + ++ S R I+ RPISAV
Sbjct: 3   STTLSIATTIRSSSPLTSASTH-----HFLSKPTAIEFPFRLSSSS-SHRAINLRPISAV 62

Query: 62  AVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAA 121
             PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   AAA 
Sbjct: 63  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAV 122

Query: 122 VEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 181
           VEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+A
Sbjct: 123 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 182

Query: 182 KKQLEEAGAKIAI 193
           KK LEEAGAK++I
Sbjct: 183 KKTLEEAGAKVSI 186

[Close]

BLAST of IVF0001029 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-45
Identity = 124/197 (62.94%), Postives = 145/197 (73.60%), Query Frame = 0


Query: 2   SSTLSTASLRSPSPSSSSSSYPSNFSHSLKP---TPLRFPFSF---APTNLSLRLIHHRP 61
           S+TLS A+      +  SSSYP+  S +  P   T + FP  F   + + L+ R  H RP
Sbjct: 3   STTLSIAT------TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRP 62

Query: 62  ISAVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDD 121
           I+AV  PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A  G   
Sbjct: 63  IAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG--- 122

Query: 122 AAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEE 181
           AAA VEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+E
Sbjct: 123 AAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDE 182

Query: 182 AEDAKKQLEEAGAKIAI 193
           AE+AKK LEEAGAK++I
Sbjct: 183 AEEAKKTLEEAGAKVSI 190

[Close]

BLAST of IVF0001029 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 108/196 (55.10%), Postives = 137/196 (69.90%), Query Frame = 0


Query: 2   SSTLSTA-SLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSF---APTNLSLRLIHHRPIS 61
           ++TLS A ++RS   SS SS   S      +P  + FPFSF   + + LS R I+  PIS
Sbjct: 3   ATTLSIATTIRS---SSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPIS 62

Query: 62  AVAVPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAA 121
           AV  P+K+ +IG  IS LTLEE+R LVDY+Q+K GVS    APAA A+ P    GG  A 
Sbjct: 63  AVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--AT 122

Query: 122 AAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
           A+VE +T FDVVI +VP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE
Sbjct: 123 ASVERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAE 182

Query: 182 DAKKQLEEAGAKIAIV 194
           + K QLEEAGAK++IV
Sbjct: 183 EDKTQLEEAGAKVSIV 193

[Close]

BLAST of IVF0001029 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-16
Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 24  SNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAV-PEKVSEIGDVISKLTLEEART 83
           S+FS  LK T  R       +++ L  I  R  S+ A   E VS+I + +S LTL E   
Sbjct: 9   SHFSRVLKSTETR------SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMD 68

Query: 84  LVDYLQEKLGVSAASFAPAAVAVAPG---------AAAGGDDAAAAVEEKTEFDVVIEEV 143
           L + L++KL +S     P   A+ PG          +AGG+      E KT FDV+++  
Sbjct: 69  LTEILRQKLNISE---LPVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAY 128

Query: 144 PSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 193
            + ++I VIK VR +T+L LKEAK+L+E  P   K+G+SKEEAE   ++L+  GAK+A+
Sbjct: 129 DAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of IVF0001029 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-10
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 54  RPISAVAVPE----KVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGA 113
           R + AVA PE    K+  I D + KL   E          K+G++    A A       A
Sbjct: 27  RHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVAVTGSVGDA 86

Query: 114 AAGGDDAAAAVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKE 173
           +A  +   A   EKT FDV +E+  + ++I VIK +RA T L LKEAK L+E  P   K 
Sbjct: 87  SASTETKTA---EKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKN 146

Query: 174 GISKEEAEDAKKQLEEAGAKIAI 193
           G++KEEAE   ++L+  GA +A+
Sbjct: 147 GLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of IVF0001029 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24929	3.7e-52	68.21	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36688	1.1e-51	67.18	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P02398	1.7e-49	63.27	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36212	2.1e-47	66.32	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	2.1e-44	62.94	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of IVF0001029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJJ4	8.6e-89	100.00	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B8B3	8.6e-89	100.00	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LHZ4	1.4e-83	95.85	Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1	[more]
A0A6J1J1D9	1.6e-74	88.60	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F403	2.1e-74	88.60	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of IVF0001029 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443526.1	1.88e-116	100.00	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053...	[more]
XP_004141094.1	8.89e-110	95.85	50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN59676.1 hypotheti...	[more]
XP_038903222.1	1.47e-108	95.34	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
XP_022983181.1	6.56e-98	88.60	50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima]	[more]
XP_022934872.1	9.31e-98	88.60	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of IVF0001029 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	1.5e-48	66.32	ribosomal protein L12-C	[more]
AT3G27830.1	1.5e-45	62.94	ribosomal protein L12-A	[more]
AT3G27840.1	1.1e-38	55.10	ribosomal protein L12-B	[more]
AT4G36420.1	4.3e-16	37.99	Ribosomal protein L12 family protein	[more]
AT4G37660.1	3.5e-10	37.06	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 64..112 e-value: 3.1E-14 score: 52.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 64..121 e-value: 4.9E-14 score: 54.1
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 64..128
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 126..192 e-value: 4.8E-24 score: 84.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 122..192 e-value: 1.4E-25 score: 91.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 121..192
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 66..192 e-value: 4.4E-33 score: 112.3
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..192
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 60..193 score: 22.959446
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 63..192 e-value: 6.07731E-40 score: 130.738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0001029.2	IVF0001029.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome