IVF0000984 (gene) Melon (IVF77) v1

Overview


Name	IVF0000984
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein BIC2
Location	chr11: 26246722 .. 26247224 (-)
RNA-Seq Expression	IVF0000984
Synteny	IVF0000984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAACCCTTCTATTTAACTATTACTATCTCTCCCTCTCAGAACTCAATTCCACAATTCGCTATGATTCCCCCAAACTCCTCCCATCCCCATGACTCTCTTTCCGTCGTAGCAAGCGCTACGGCTCCTGCACCATCCCCCGCCGGTGCCTCCACCGGAGATTCTAGCAGCACTGTTGGGCCTGAGAAATTGAAGGGCTGTTGTGGTGTTCGAGAGCGGCTGAAAAGGCACCGTGAAGAGGTCGCCGGGAAAGTGACGGTGCCCGAGAAATGGGGCAAAGAGGAGCTGCTCAAGGATTGGATCGACTACTCGGCGTTCGACAGAATCTTGGCCGCCGGCAGAATAGCGTCGGCGAGGGCGTCTCTAGCGGCGGAGGGACAGCAGAACCGTTCACGGCGGAGGGTAGAAAGCAGGTGTTGAGATTGGGGAAAATCTGTTTTTAATTAACAACTTTGAATTCATATTTTATTGTTATCTATAGAGAGATTAAAACATAAACACAC

mRNA sequence

ACACAACCCTTCTATTTAACTATTACTATCTCTCCCTCTCAGAACTCAATTCCACAATTCGCTATGATTCCCCCAAACTCCTCCCATCCCCATGACTCTCTTTCCGTCGTAGCAAGCGCTACGGCTCCTGCACCATCCCCCGCCGGTGCCTCCACCGGAGATTCTAGCAGCACTGTTGGGCCTGAGAAATTGAAGGGCTGTTGTGGTGTTCGAGAGCGGCTGAAAAGGCACCGTGAAGAGGTCGCCGGGAAAGTGACGGTGCCCGAGAAATGGGGCAAAGAGGAGCTGCTCAAGGATTGGATCGACTACTCGGCGTTCGACAGAATCTTGGCCGCCGGCAGAATAGCGTCGGCGAGGGCGTCTCTAGCGGCGGAGGGACAGCAGAACCGTTCACGGCGGAGGGTAGAAAGCAGGTGTTGAGATTGGGGAAAATCTGTTTTTAATTAACAACTTTGAATTCATATTTTATTGTTATCTATAGAGAGATTAAAACATAAACACAC

Coding sequence (CDS)

ATGATTCCCCCAAACTCCTCCCATCCCCATGACTCTCTTTCCGTCGTAGCAAGCGCTACGGCTCCTGCACCATCCCCCGCCGGTGCCTCCACCGGAGATTCTAGCAGCACTGTTGGGCCTGAGAAATTGAAGGGCTGTTGTGGTGTTCGAGAGCGGCTGAAAAGGCACCGTGAAGAGGTCGCCGGGAAAGTGACGGTGCCCGAGAAATGGGGCAAAGAGGAGCTGCTCAAGGATTGGATCGACTACTCGGCGTTCGACAGAATCTTGGCCGCCGGCAGAATAGCGTCGGCGAGGGCGTCTCTAGCGGCGGAGGGACAGCAGAACCGTTCACGGCGGAGGGTAGAAAGCAGGTGTTGA

Protein sequence

MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC

Homology

[Close]

BLAST of IVF0000984 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.8e-13
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 50  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNR 109
           R+RLKRHREEVAGKV +P+ WGKE LL  W+D+S FD    + +I SARA+L A+   + 
Sbjct: 41  RDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDA 100

Query: 110 SRR-------RVESRC 119
             R       RVES C
Sbjct: 101 GARGSRPQRLRVESSC 116

[Close]

BLAST of IVF0000984 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 50  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNR 109
           RERLK+HR E+AG+V +PE WG+EELLKDWID S FD  L    I+SAR +L  E ++  
Sbjct: 67  RERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

Query: 110 S 111
           S
Sbjct: 127 S 127

[Close]

BLAST of IVF0000984 vs. ExPASy TrEMBL
Match: A0A5D3D5X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold28061G00010 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 119
           AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118

[Close]

BLAST of IVF0000984 vs. ExPASy TrEMBL
Match: A0A5A7STT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00580 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.9e-56
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 119
           AGKVTVP+KWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118

[Close]

BLAST of IVF0000984 vs. ExPASy TrEMBL
Match: A0A1S3C9F3 (uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.9e-56
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 119
           AGKVTVP+KWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118

[Close]

BLAST of IVF0000984 vs. ExPASy TrEMBL
Match: A0A0A0KBS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.2e-44
Identity = 104/120 (86.67%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 119
           AGKV VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123

[Close]

BLAST of IVF0000984 vs. ExPASy TrEMBL
Match: A0A6J1DHR5 (protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 73/101 (72.28%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 25  SPAGASTGDSSSTVGPEKL----KGCCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWI 84
           +PA A+  +S    G EKL    K  CGVRERLKRHREEVAGKVTVPEKWGKEELLKDWI
Sbjct: 6   NPASAAAPESHDGSGVEKLLQPSKSSCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWI 65

Query: 85  DYSAFDRILAAGRIASARASLAAEGQQ---NRSRRRVESRC 119
           DYSAFDRILAA RIA+ARASLAAEG++   +R   RVESRC
Sbjct: 66  DYSAFDRILAAKRIATARASLAAEGRRAANSRPALRVESRC 106

[Close]

BLAST of IVF0000984 vs. NCBI nr
Match: TYK18920.1 (uncharacterized protein E5676_scaffold28061G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (577), Expect = 1.61e-74
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118
           AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118

[Close]

BLAST of IVF0000984 vs. NCBI nr
Match: XP_008458586.1 (PREDICTED: uncharacterized protein LOC103497945 [Cucumis melo] >KAA0033406.1 uncharacterized protein E6C27_scaffold111G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 4.61e-74
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118
           AGKVTVP+KWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESRC 118

[Close]

BLAST of IVF0000984 vs. NCBI nr
Match: KGN46948.1 (hypothetical protein Csa_020684 [Cucumis sativus])

HSP 1 Score: 186 bits (471), Expect = 2.75e-58
Identity = 104/120 (86.67%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 118
           AGKV VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123

[Close]

BLAST of IVF0000984 vs. NCBI nr
Match: KAG7010351.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146 bits (368), Expect = 5.73e-40
Identity = 86/117 (73.50%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           M+PPN S   D LS   ++T PA +P   S GDSS   G EK KGCCG RERLKRHREEV
Sbjct: 1   MVPPNRSDSGDRLSTGINST-PAAAPVDGSPGDSSG--GAEKFKGCCGFRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRRRVESR 117
           AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASL AEG      RRVESR
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEG------RRVESR 108

[Close]

BLAST of IVF0000984 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (366), Expect = 1.50e-37
Identity = 81/107 (75.70%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60
           M+PPN S   D LS   ++T PA +P   S GDSS   G EKLKGCCG RERLKRHREEV
Sbjct: 1   MVPPNRSDSGDRLSTGINST-PAAAPVDGSPGDSSG--GAEKLKGCCGFRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQ 107
           AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASL AEG++
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRR 104

[Close]

BLAST of IVF0000984 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-14
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 50  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNR 109
           R+RLKRHREEVAGKV +P+ WGKE LL  W+D+S FD    + +I SARA+L A+   + 
Sbjct: 41  RDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDA 100

Query: 110 SRR-------RVESRC 119
             R       RVES C
Sbjct: 101 GARGSRPQRLRVESSC 116

[Close]

BLAST of IVF0000984 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 50  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNR 109
           RERLK+HR E+AG+V +PE WG+EELLKDWID S FD  L    I+SAR +L  E ++  
Sbjct: 67  RERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

Query: 110 S 111
           S
Sbjct: 127 S 127

The following BLAST results are available for this feature:

BLAST of IVF0000984 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M280	7.8e-13	51.32	Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1	[more]
Q9LXJ1	1.7e-12	57.38	Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1	[more]

BLAST of IVF0000984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5X1	2.6e-56	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7STT7	5.9e-56	99.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3C9F3	5.9e-56	99.15	uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=...	[more]
A0A0A0KBS7	5.2e-44	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1	[more]
A0A6J1DHR5	4.9e-26	72.28	protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1	[more]

BLAST of IVF0000984 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18920.1	1.61e-74	100.00	uncharacterized protein E5676_scaffold28061G00010 [Cucumis melo var. makuwa]	[more]
XP_008458586.1	4.61e-74	99.15	PREDICTED: uncharacterized protein LOC103497945 [Cucumis melo] >KAA0033406.1 unc...	[more]
KGN46948.1	2.75e-58	86.67	hypothetical protein Csa_020684 [Cucumis sativus]	[more]
KAG7010351.1	5.73e-40	73.50	60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6570486.1	1.50e-37	75.70	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of IVF0000984 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44450.1	5.5e-14	51.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52740.1	1.2e-13	57.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..38
None	No IPR available	PANTHER	PTHR34207:SF12	SUBFAMILY NOT NAMED	coord: 11..118
IPR040374	Protein BIC	PANTHER	PTHR34207	PROTEIN BIC1	coord: 11..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000984.1	IVF0000984.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009785	blue light signaling pathway