IVF0000959 (gene) Melon (IVF77) v1

Overview
NameIVF0000959
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 18372471 .. 18372737 (-)
RNA-Seq ExpressionIVF0000959
SyntenyIVF0000959
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGCAGGACGGCTCAGACAGGCGTGCACGGCTCAGGGAAACGCGTACGGCTCGCACGCGTGTTCGGCTGGGGTAGCTCGGCTCTTCGCGCGACTTGCAGGGATGCGCATGCGGGTAGCCGCTGGCGGCTCGGCTTCACGCGGCTATGGAGGCGCGAAACAGTTGGAGACGGGTCAGCTCGTGGAGAAGGGTACGGGCGTGCGGATTGGTTTTCAACGGACGACGACTGACGATGCAGCAGTGCGTTGGGTGACGGCGAAATGA

mRNA sequence

ATGTGCGCAGGACGGCTCAGACAGGCGTGCACGGCTCAGGGAAACGCGTACGGCTCGCACGCGTGTTCGGCTGGGGTAGCTCGGCTCTTCGCGCGACTTGCAGGGATGCGCATGCGGGTAGCCGCTGGCGGCTCGGCTTCACGCGGCTATGGAGGCGCGAAACAGTTGGAGACGGGTCAGCTCGTGGAGAAGGGTACGGGCGTGCGGATTGGTTTTCAACGGACGACGACTGACGATGCAGCAGTGCGTTGGGTGACGGCGAAATGA

Coding sequence (CDS)

ATGTGCGCAGGACGGCTCAGACAGGCGTGCACGGCTCAGGGAAACGCGTACGGCTCGCACGCGTGTTCGGCTGGGGTAGCTCGGCTCTTCGCGCGACTTGCAGGGATGCGCATGCGGGTAGCCGCTGGCGGCTCGGCTTCACGCGGCTATGGAGGCGCGAAACAGTTGGAGACGGGTCAGCTCGTGGAGAAGGGTACGGGCGTGCGGATTGGTTTTCAACGGACGACGACTGACGATGCAGCAGTGCGTTGGGTGACGGCGAAATGA

Protein sequence

MCAGRLRQACTAQGNAYGSHACSAGVARLFARLAGMRMRVAAGGSASRGYGGAKQLETGQLVEKGTGVRIGFQRTTTDDAAVRWVTAK
Homology
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BLAST of IVF0000959 vs. NCBI nr
Match: KAA0032400.1 (hypothetical protein E6C27_scaffold219G002780 [Cucumis melo var. makuwa] >TYJ96350.1 hypothetical protein E5676_scaffold1159G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 6.50e-05
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 6   LRQACTAQGNAYGSHACSAG---VARLFARLAGMRMRVAAGGSASRGYGGAKQLETGQLV 65
           +RQ  TA+GN + SHA S G   V R+   LAGMR+R+AAGGS SRGYGG +     + +
Sbjct: 52  VRQTHTARGNVHDSHASSTGGSSVPRV--PLAGMRVRLAAGGSTSRGYGGVRMARGAKRL 111

Query: 66  EKGTGVRIGF 72
           E G     GF
Sbjct: 112 EAGVAQVSGF 119

The following BLAST results are available for this feature:
BLAST of IVF0000959 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0000959 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0000959 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032400.16.50e-0548.57hypothetical protein E6C27_scaffold219G002780 [Cucumis melo var. makuwa] >TYJ963... [more]
BLAST of IVF0000959 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000959.1IVF0000959.1mRNA