IVF0000947 (gene) Melon (IVF77) v1

Overview
NameIVF0000947
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr04: 6884045 .. 6884314 (+)
RNA-Seq ExpressionIVF0000947
SyntenyIVF0000947
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTCTTAGCAGAATACTACAACACCTAGAGCAGCAAAGAAACAAGATCAAAGGTATTGATATAAATGGTTTCAATCTAACTCATCTTCTCTTTACAAGTGACATCTTGCTTTTCGTTGAGGACAATGATGAATATATCATAAATCTCCAATTTTCTATTCATCTCTTTGAATTTGTTTCTGGTTTGAACATCAATCGGGTTAAACCTACCATCTCCCCAATTAATATCAGCAAAGAGAGAGTTGATTTGGTAGCCGATAGTTGA

mRNA sequence

ATGGATTGTCTTAGCAGAATACTACAACACCTAGAGCATGACATCTTGCTTTTCGTTGAGGACAATGATGAATATATCATAAATCTCCAATTTTCTATTCATCTCTTTGAATTTGTTTCTGGTTTGAACATCAATCGGGTTAAACCTACCATCTCCCCAATTAATATCAGCAAAGAGAGAGTTGATTTGGTAGCCGATAGTTGA

Coding sequence (CDS)

ATGGATTGTCTTAGCAGAATACTACAACACCTAGAGCATGACATCTTGCTTTTCGTTGAGGACAATGATGAATATATCATAAATCTCCAATTTTCTATTCATCTCTTTGAATTTGTTTCTGGTTTGAACATCAATCGGGTTAAACCTACCATCTCCCCAATTAATATCAGCAAAGAGAGAGTTGATTTGGTAGCCGATAGTTGA

Protein sequence

MDCLSRILQHLEHDILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS
Homology
BLAST of IVF0000947 vs. ExPASy TrEMBL
Match: A0A5A7TQ88 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00990 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  MDCLSRILQHLEHD--ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISK 60
          MD L+RIL  LE    IL+FVEDNDEYI NL+F+IHL E  S LNIN  K +ISPIN+  
Sbjct: 1  MDYLNRILIDLEKKGVILMFVEDNDEYIKNLKFAIHLSEAASSLNINLSKSSISPINVDS 60

Query: 61 ERVDLVADS 68
           +VDLVA +
Sbjct: 61 SKVDLVAST 69

BLAST of IVF0000947 vs. ExPASy TrEMBL
Match: A0A5A7SVC7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00530 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 1  MDCLSRILQHLEH---------------------DILLFVEDNDEYIINLQFSIHLFEFV 60
          MD LSR+L+HLE+                     DILLFV+D DE I NLQF+IHLFE  
Sbjct: 1  MDYLSRLLKHLENSNKIKGVIIKDINLTHLLFADDILLFVQDEDESIRNLQFAIHLFESA 60

Query: 61 SGLNINRVKPTISPINISKERVDLVADS 68
          +GLNIN  K +I+ +N+ KER + VA S
Sbjct: 61 TGLNINLTKSSITHVNVRKERSEKVAKS 88

BLAST of IVF0000947 vs. ExPASy TrEMBL
Match: A0A5D3BF46 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 14  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA 66
           DILLFV+DN E I NLQF+IHLFE  S LNIN +K +ISPIN++KER D VA
Sbjct: 50  DILLFVQDNVESIKNLQFTIHLFEAASSLNINLIKTSISPINVNKERSDKVA 101

BLAST of IVF0000947 vs. ExPASy TrEMBL
Match: A0A5D3E3T6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00010 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 1   MDCLSRILQHLE---------------------HDILLFVEDNDEYIINLQFSIHLFEFV 60
           MD LS IL+HLE                     +DILLFVED+D  I NLQ +IHLFE  
Sbjct: 108 MDYLSCILKHLENSNKIKGVLINDINLIHLLFANDILLFVEDDDNSIRNLQNAIHLFEVA 167

Query: 61  SGLNINRVKPTISPINISKERVDLVADS 68
           SGLNI+  K +ISP+NI KE ++ VA+S
Sbjct: 168 SGLNIHLSKSSISPVNIEKEIIERVANS 195

BLAST of IVF0000947 vs. ExPASy TrEMBL
Match: A0A5A7SXB2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00260 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1   MDCLSRILQHLE----------------------HDILLFVEDNDEYIINLQFSIHLFEF 60
           MD LSR+L HLE                       D+L+FVEDN++Y+ NLQ ++ LFE 
Sbjct: 57  MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 116

Query: 61  VSGLNINRVKPTISPINISKERVDLVA 66
            SGL  N  K TISPINIS +R D +A
Sbjct: 117 ASGLTFNHSKSTISPINISADRTDQIA 143

BLAST of IVF0000947 vs. NCBI nr
Match: KAA0045522.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK02111.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.23e-14
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  MDCLSRILQHLEHD--ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISK 60
          MD L+RIL  LE    IL+FVEDNDEYI NL+F+IHL E  S LNIN  K +ISPIN+  
Sbjct: 1  MDYLNRILIDLEKKGVILMFVEDNDEYIKNLKFAIHLSEAASSLNINLSKSSISPINVDS 60

Query: 61 ERVDLVADS 67
           +VDLVA +
Sbjct: 61 SKVDLVAST 69

BLAST of IVF0000947 vs. NCBI nr
Match: TYJ97747.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.37e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 14  DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVA 65
           DILLFV+DN E I NLQF+IHLFE  S LNIN +K +ISPIN++KER D VA
Sbjct: 50  DILLFVQDNVESIKNLQFTIHLFEAASSLNINLIKTSISPINVNKERSDKVA 101

BLAST of IVF0000947 vs. NCBI nr
Match: KAA0048634.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK10835.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 9.19e-11
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 14 DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVD 62
          DILLFV+D+DE I NLQF+IHLFE  SGLNIN  K +IS I ++KER D
Sbjct: 35 DILLFVQDDDESIGNLQFAIHLFESASGLNINLTKTSISSIKVNKERTD 83

BLAST of IVF0000947 vs. NCBI nr
Match: KAA0033401.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 9.94e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 14 DILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS 67
          DILLFV+D DE I NLQF+IHLFE  +GLNIN  K +I+ +N+ KER + VA S
Sbjct: 35 DILLFVQDEDESIRNLQFAIHLFESATGLNINLTKSSITHVNVRKERSEKVAKS 88

BLAST of IVF0000947 vs. NCBI nr
Match: TYK07347.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.02e-10
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 15  ILLFVEDNDEYIINLQFSIHLFEFVSGLNINRVKPTISPINISKERVDLVADS 67
           ILLFV+D DE I NLQFSIHLFE  +GLNIN  K  I+P+N+SK R + VA S
Sbjct: 81  ILLFVQDEDESIRNLQFSIHLFESATGLNINLTKSLITPVNVSKARSEKVAKS 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TQ881.6e-1060.87LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7SVC72.3e-0947.73LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BF464.0e-0969.23LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E3T61.2e-0848.86LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7SXB21.5e-0844.83LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0045522.11.23e-1460.87LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK021... [more]
TYJ97747.11.37e-1269.23LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0048634.19.19e-1167.35LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK108... [more]
KAA0033401.19.94e-1161.11LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK07347.13.02e-1064.15LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000947.1IVF0000947.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane