IVF0000933 (gene) Melon (IVF77) v1

Overview


Name	IVF0000933
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pro-like protein
Location	chr01: 23616825 .. 23617217 (-)
RNA-Seq Expression	IVF0000933
Synteny	IVF0000933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGAGGAGAAGTTTGGATGCGCCAACGAGAAGCAGTGTTTATTCCACCCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGCTCAAGAATGAGGTACTAAAGTTGATGGATGCAAAGATTCTATTGGTAGGACAAGTGAGCATGCAAGAAATCAAGGTCGATATGATTATTGATAAGGAAACTTCAAATGATACCTCAATTACGGTTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAGTGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTCTCTAAAGGATCACAAAAGTAA

mRNA sequence

ATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGAGGAGAAGTTTGGATGCGCCAACGAGAAGCAGTGTTTATTCCACCCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGCTCAAGAATGAGGTACTAAAGTTGATGGATGCAAAGATTCTATTGGTAGGACAAGTGAGCATGCAAGAAATCAAGGTCGATATGATTATTGATAAGGAAACTTCAAATGATACCTCAATTACGGTTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAGTGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTCTCTAAAGGATCACAAAAGTAA

Coding sequence (CDS)

ATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGAGGAGAAGTTTGGATGCGCCAACGAGAAGCAGTGTTTATTCCACCCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGCTCAAGAATGAGGTACTAAAGTTGATGGATGCAAAGATTCTATTGGTAGGACAAGTGAGCATGCAAGAAATCAAGGTCGATATGATTATTGATAAGGAAACTTCAAATGATACCTCAATTACGGTTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAGTGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTCTCTAAAGGATCACAAAAGTAA

Protein sequence

MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMDAKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKRTLKVSKGSQK

Homology

[Close]

BLAST of IVF0000933 vs. ExPASy TrEMBL
Match: A0A5D3E596 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001150 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.8e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD
Sbjct: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120

Query: 121 TLKVSKGSQK 131
           TLKVSKGSQK
Sbjct: 121 TLKVSKGSQK 130

[Close]

BLAST of IVF0000933 vs. ExPASy TrEMBL
Match: A0A5A7SM74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00440 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILR AGYLS RFNNDE EKFGCANEKQCLFH EIDDHFIEDCCELKNEV KLMD
Sbjct: 1   MNTLFQILRRAGYLSPRFNNDEGEKFGCANEKQCLFHSEIDDHFIEDCCELKNEVQKLMD 60

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQVSMQEI+VDMIIDKETSNDTSIT+ISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 61  AKILLVGQVSMQEIEVDMIIDKETSNDTSITIISENTISPNLLVYQCPPKFELNNWEIKR 120

Query: 121 TLKVSKGSQK 131
           TLKVSKGSQK
Sbjct: 121 TLKVSKGSQK 130

[Close]

BLAST of IVF0000933 vs. ExPASy TrEMBL
Match: A0A5D3C9I5 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00830 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.9e-62
Identity = 121/130 (93.08%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILRGAGYLS RFNNDE EKFGCANEKQCLFHPEIDDHFIEDCCE KNEV KLMD
Sbjct: 55  MNTLFQILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMD 114

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQ+SMQEI+VD+IIDK+TSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 115 AKILLVGQMSMQEIEVDIIIDKKTSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 174

Query: 121 TLKVSKGSQK 131
           TLKV KGSQK
Sbjct: 175 TLKVFKGSQK 184

[Close]

BLAST of IVF0000933 vs. ExPASy TrEMBL
Match: A0A5A7T401 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00270 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 120/130 (92.31%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQIL  AGYLS RFNNDE  KFGCANEKQCLFHPEIDDHFIEDCCE KNEV KLMD
Sbjct: 472 MNTLFQILSRAGYLSPRFNNDEGVKFGCANEKQCLFHPEIDDHFIEDCCEPKNEVQKLMD 531

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQVS+QEI+VDMIIDKETSNDTSIT+ISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 532 AKILLVGQVSIQEIEVDMIIDKETSNDTSITIISENTISPNLLVYQCPPKFELNNWEIKR 591

Query: 121 TLKVSKGSQK 131
           TLKVSKGSQK
Sbjct: 592 TLKVSKGSQK 601

[Close]

BLAST of IVF0000933 vs. ExPASy TrEMBL
Match: A0A1S4E534 (uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 120/130 (92.31%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQIL  AGYLS RFNNDE  KFGCANEKQCLFHPEIDDHFIEDCCE KNEV KLMD
Sbjct: 472 MNTLFQILSRAGYLSPRFNNDEGVKFGCANEKQCLFHPEIDDHFIEDCCEPKNEVQKLMD 531

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQVS+QEI+VDMIIDKETSNDTSIT+ISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 532 AKILLVGQVSIQEIEVDMIIDKETSNDTSITIISENTISPNLLVYQCPPKFELNNWEIKR 591

Query: 121 TLKVSKGSQK 131
           TLKVSKGSQK
Sbjct: 592 TLKVSKGSQK 601

[Close]

BLAST of IVF0000933 vs. NCBI nr
Match: KAA0026188.1 (uncharacterized protein E6C27_scaffold19G001530 [Cucumis melo var. makuwa] >TYK30770.1 uncharacterized protein E5676_scaffold343G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 264 bits (675), Expect = 4.40e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD
Sbjct: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120

Query: 121 TLKVSKGSQK 130
           TLKVSKGSQK
Sbjct: 121 TLKVSKGSQK 130

[Close]

BLAST of IVF0000933 vs. NCBI nr
Match: KAA0025555.1 (uncharacterized protein E6C27_scaffold253G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 248 bits (634), Expect = 7.91e-83
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILR AGYLS RFNNDE EKFGCANEKQCLFH EIDDHFIEDCCELKNEV KLMD
Sbjct: 1   MNTLFQILRRAGYLSPRFNNDEGEKFGCANEKQCLFHSEIDDHFIEDCCELKNEVQKLMD 60

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQVSMQEI+VDMIIDKETSNDTSIT+ISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 61  AKILLVGQVSMQEIEVDMIIDKETSNDTSITIISENTISPNLLVYQCPPKFELNNWEIKR 120

Query: 121 TLKVSKGSQK 130
           TLKVSKGSQK
Sbjct: 121 TLKVSKGSQK 130

[Close]

BLAST of IVF0000933 vs. NCBI nr
Match: KAA0050802.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK08543.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 247 bits (630), Expect = 1.98e-81
Identity = 121/130 (93.08%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILRGAGYLS RFNNDE EKFGCANEKQCLFHPEIDDHFIEDCCE KNEV KLMD
Sbjct: 55  MNTLFQILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMD 114

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKILLVGQ+SMQEI+VD+IIDK+TSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR
Sbjct: 115 AKILLVGQMSMQEIEVDIIIDKKTSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 174

Query: 121 TLKVSKGSQK 130
           TLKV KGSQK
Sbjct: 175 TLKVFKGSQK 184

[Close]

BLAST of IVF0000933 vs. NCBI nr
Match: KAA0063108.1 (uncharacterized protein E6C27_scaffold1337G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 7.01e-77
Identity = 116/130 (89.23%), Postives = 122/130 (93.85%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILR AGYLS RFNND+ EKFGCANEKQCLFHPEIDDHFI+DCCE KNEV KLMD
Sbjct: 1   MNTLFQILRRAGYLSPRFNNDDGEKFGCANEKQCLFHPEIDDHFIKDCCEFKNEVQKLMD 60

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKIL VGQ+SMQ+I+VDMIIDKETSNDTSITVIS+NTISPNLLV Q PPKFELNNWEIKR
Sbjct: 61  AKILWVGQMSMQKIEVDMIIDKETSNDTSITVISKNTISPNLLVSQFPPKFELNNWEIKR 120

Query: 121 TLKVSKGSQK 130
           TLKVSKGSQK
Sbjct: 121 TLKVSKGSQK 130

[Close]

BLAST of IVF0000933 vs. NCBI nr
Match: TYK00168.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 232 bits (591), Expect = 7.83e-75
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MNTLFQILRGAGYLSLRFNNDEEEKFGCANEKQCLFHPEIDDHFIEDCCELKNEVLKLMD 60
           MNTLFQILR AGYLS RFNND+ EKFGCANEKQCLFHPEIDDHFI+DCCE KNEV KLMD
Sbjct: 1   MNTLFQILRRAGYLSPRFNNDDGEKFGCANEKQCLFHPEIDDHFIKDCCEFKNEVQKLMD 60

Query: 61  AKILLVGQVSMQEIKVDMIIDKETSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKR 120
           AKIL VGQ+SMQ+I+VDMIIDKETSNDTSITVIS+NTISPNLLV Q PPKFELNNWEIKR
Sbjct: 61  AKILWVGQMSMQKIEVDMIIDKETSNDTSITVISKNTISPNLLVSQFPPKFELNNWEIKR 120

Query: 121 TLKVSKGSQ 129
           TLKVSKGSQ
Sbjct: 121 TLKVSKGSQ 129

The following BLAST results are available for this feature:

BLAST of IVF0000933 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E596	4.8e-67	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SM74	2.7e-62	94.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C9I5	7.9e-62	93.08	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323...	[more]
A0A5A7T401	1.9e-60	92.31	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4E534	1.9e-60	92.31	uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=...	[more]

BLAST of IVF0000933 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026188.1	4.40e-89	100.00	uncharacterized protein E6C27_scaffold19G001530 [Cucumis melo var. makuwa] >TYK3...	[more]
KAA0025555.1	7.91e-83	94.62	uncharacterized protein E6C27_scaffold253G00440 [Cucumis melo var. makuwa]	[more]
KAA0050802.1	1.98e-81	93.08	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK08543.1 Gag-pro-like protein...	[more]
KAA0063108.1	7.01e-77	89.23	uncharacterized protein E6C27_scaffold1337G00160 [Cucumis melo var. makuwa]	[more]
TYK00168.1	7.83e-75	89.15	putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu...	[more]

BLAST of IVF0000933 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000933.1	IVF0000933.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity