IVF0000913 (gene) Melon (IVF77) v1

Overview
NameIVF0000913
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr01: 24471990 .. 24472193 (-)
RNA-Seq ExpressionIVF0000913
SyntenyIVF0000913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTATTCCCGACGCACAAAAATATCGGGAATAGTGGAAAATACGTTGAGAACACAATTTTCGACGTAAAATCGTGCATCGGGAAGACCGTCGGAAGAAACACATCGAAAGACCTTTTCCCGATGCGTCACCAACAAGGAGTCAGGAATACCCTTCTCCCGTCGTCATCTTTTCTGACGTTGTTGATGCGTCAGGAATAA

mRNA sequence

ATGGGGCTATTCCCGACGCACAAAAATATCGGGAATAGTGGAAAATACGTTGAGAACACAATTTTCGACGTAAAATCGTGCATCGGGAAGACCGTCGGAAGAAACACATCGAAAGACCTTTTCCCGATGCGTCACCAACAAGGAGTCAGGAATACCCTTCTCCCGTCGTCATCTTTTCTGACGTTGTTGATGCGTCAGGAATAA

Coding sequence (CDS)

ATGGGGCTATTCCCGACGCACAAAAATATCGGGAATAGTGGAAAATACGTTGAGAACACAATTTTCGACGTAAAATCGTGCATCGGGAAGACCGTCGGAAGAAACACATCGAAAGACCTTTTCCCGATGCGTCACCAACAAGGAGTCAGGAATACCCTTCTCCCGTCGTCATCTTTTCTGACGTTGTTGATGCGTCAGGAATAA

Protein sequence

MGLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNTLLPSSSFLTLLMRQE
Homology
BLAST of IVF0000913 vs. ExPASy TrEMBL
Match: A0A5A7TBZ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00370 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-07
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 7  HKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNTLLPSSSFLTLLMRQ 66
          HKN+  SGK +   I +V+S I K VGRN   + FPM HQQG+ N LLP+SS LT  MR+
Sbjct: 2  HKNVSESGKDIGKGIPNVESYIIKVVGRNVLGERFPMPHQQGIGNNLLPTSSLLTPSMRR 61

Query: 67 E 68
          +
Sbjct: 62 Q 62

BLAST of IVF0000913 vs. ExPASy TrEMBL
Match: A0A5A7T7S7 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2967G00080 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.4e-06
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 1   MGLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNTLLPSSSF- 60
           +G    HK +  SGK V N I D +  +  T+ RNTS+D FP  HQQGV NT LP+SS  
Sbjct: 167 VGRLLMHKYVDESGKDVGNQILDAERDVRTTIERNTSRDRFPTCHQQGVENTFLPTSSLP 226

Query: 61  LTLLMRQE 68
           ++ + RQ+
Sbjct: 227 MSSMHRQQ 234

BLAST of IVF0000913 vs. ExPASy TrEMBL
Match: A0A5A7TPM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001190 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 2   GLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVR 51
           G+ PTHKN+G S KYV     DV   +G  VGRN S ++FP  +Q GVR
Sbjct: 154 GVIPTHKNVGESEKYVGKGYADVFHDVGNNVGRNESGEVFPTSYQHGVR 202

BLAST of IVF0000913 vs. ExPASy TrEMBL
Match: A0A5A7SP10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00270 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 7  HKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNT 53
          HK +G + KYVE    DV++ +GK VGRNTS++ FP ++Q GVR T
Sbjct: 2  HKYVGENAKYVEKGYPDVQNDVGKNVGRNTSREAFPTQYQIGVRKT 47

BLAST of IVF0000913 vs. ExPASy TrEMBL
Match: A0A5A7SVV0 (Transcription factor HBP-1b(C38)-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00200 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0

Query: 2   GLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGV 50
           G+ PTHK +G + KYVE    DV++ +GK VG N S++ FP  +Q GV
Sbjct: 237 GVLPTHKYVGKNAKYVEKGYPDVQNDVGKNVGGNASREAFPTPYQHGV 284

BLAST of IVF0000913 vs. NCBI nr
Match: KAA0039107.1 (hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa] >TYK25976.1 hypothetical protein E5676_scaffold1441G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.56e-10
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 7  HKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNTLLPSSSFLTLLMRQ 66
          HKN+  SGK +   I +V+S I K VGRN   + FPM HQQG+ N LLP+SS LT  MR+
Sbjct: 2  HKNVSESGKDIGKGIPNVESYIIKVVGRNVLGERFPMPHQQGIGNNLLPTSSLLTPSMRR 61

BLAST of IVF0000913 vs. NCBI nr
Match: KAA0038928.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.40e-08
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 0

Query: 1   MGLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNTLLPSSS 58
           +G    HK +  SGK V N I D +  +  T+ RNTS+D FP  HQQGV NT LP+SS
Sbjct: 167 VGRLLMHKYVDESGKDVGNQILDAERDVRTTIERNTSRDRFPTCHQQGVENTFLPTSS 224

BLAST of IVF0000913 vs. NCBI nr
Match: KAA0032063.1 (hypothetical protein E6C27_scaffold223G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 4.96e-07
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 7  HKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVRNT 52
          HK +G + KYVE    DV++ +GK VGRNTS++ FP ++Q GVR T
Sbjct: 2  HKYVGENAKYVEKGYPDVQNDVGKNVGRNTSREAFPTQYQIGVRKT 47

BLAST of IVF0000913 vs. NCBI nr
Match: KAA0037655.1 (hypothetical protein E6C27_scaffold277G003180 [Cucumis melo var. makuwa] >TYK22800.1 hypothetical protein E5676_scaffold311G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.56e-06
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0

Query: 2  GLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGV 49
          G+ PT KN+G + KYV  T  DV + +GK VGRN S + FP  +Q+GV
Sbjct: 31 GVLPTPKNVGENEKYVGITFPDVPNGVGKNVGRNASGEAFPTPYQRGV 78

BLAST of IVF0000913 vs. NCBI nr
Match: KAA0045130.1 (hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK23607.1 hypothetical protein E5676_scaffold500G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.59e-06
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 2   GLFPTHKNIGNSGKYVENTIFDVKSCIGKTVGRNTSKDLFPMRHQQGVR 50
           G+ PTHKN+G S KYV     DV   +G  VGRN S ++FP  +Q GVR
Sbjct: 154 GVIPTHKNVGESEKYVGKGYADVFHDVGNNVGRNESGEVFPTSYQHGVR 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBZ34.9e-0752.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T7S75.4e-0645.59Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
A0A5A7TPM21.3e-0451.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SP101.7e-0452.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SVV02.3e-0447.92Transcription factor HBP-1b(C38)-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
KAA0039107.11.56e-1052.46hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa] >TYK2597... [more]
KAA0038928.13.40e-0850.00retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0032063.14.96e-0752.17hypothetical protein E6C27_scaffold223G00270 [Cucumis melo var. makuwa][more]
KAA0037655.11.56e-0650.00hypothetical protein E6C27_scaffold277G003180 [Cucumis melo var. makuwa] >TYK228... [more]
KAA0045130.11.59e-0651.02hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK2360... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000913.1IVF0000913.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding