IVF0000908 (gene) Melon (IVF77) v1

Overview


Name	IVF0000908
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr04: 16062452 .. 16063162 (-)
RNA-Seq Expression	IVF0000908
Synteny	IVF0000908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTGCAATATTAAGAGATAACCAATTATATGCTAATCGAAAGAAATGCGTGTTCGCCCATTCCCAAATACGATACTTGGGCCATATTATTTCAAAAAACGGGGTAGAAGCAGACCAGGATAAAGTTAGAAGCATGCTACAATGGCCCCAACCTAAAGATATAACAAGCTTAAGAGGATTTTCAGGCCTGACGGGTTACTATAGACGCTTTGTCAAGAGTTATGGAGAGATTGCAGCACCCTTGACCAAACTGCTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACACTTGCATTTGAAAGTCTAAAAACAGCTATGACTACAATACCCGTGCTAGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAGACTGATGCCTCTGGCAGTGGATTAGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCGCCAAGGGCCCAATCCAAATCCATCTATGAAAGAGAATTGATGGTTGTAGTACTATCAGTACAGAAGTGGCGGCATTATCTCATAGGAAGAAGGTTTACCATTGTATCGGACCAAAAAGCTCTAAAGTTCCTATTGGAGCAGAGGGAGGTTCAACCACAATTCCAAAAATGGTTAACCAAGCTGTTGGGATATGACTTTGAGATTCTATATCAACCAAGACTCCAAAATAAAGCAGCTGATGCACTTTGA

mRNA sequence

ATGATTTTTGCAATATTAAGAGATAACCAATTATATGCTAATCGAAAGAAATGCGTGTTCGCCCATTCCCAAATACGATACTTGGGCCATATTATTTCAAAAAACGGGGTAGAAGCAGACCAGGATAAAGTTAGAAGCATGCTACAATGGCCCCAACCTAAAGATATAACAAGCTTAAGAGGATTTTCAGGCCTGACGGGTTACTATAGACGCTTTGTCAAGAGTTATGGAGAGATTGCAGCACCCTTGACCAAACTGCTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACACTTGCATTTGAAAGTCTAAAAACAGCTATGACTACAATACCCGTGCTAGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAGACTGATGCCTCTGGCAGTGGATTAGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCGCCAAGGGCCCAATCCAAATCCATCTATGAAAGAGAATTGATGGTTGTAGTACTATCAGTACAGAAGTGGCGGCATTATCTCATAGGAAGAAGGTTTACCATTGTATCGGACCAAAAAGCTCTAAAGTTCCTATTGGAGCAGAGGGAGGTTCAACCACAATTCCAAAAATGGTTAACCAAGCTGTTGGGATATGACTTTGAGATTCTATATCAACCAAGACTCCAAAATAAAGCAGCTGATGCACTTTGA

Coding sequence (CDS)

ATGATTTTTGCAATATTAAGAGATAACCAATTATATGCTAATCGAAAGAAATGCGTGTTCGCCCATTCCCAAATACGATACTTGGGCCATATTATTTCAAAAAACGGGGTAGAAGCAGACCAGGATAAAGTTAGAAGCATGCTACAATGGCCCCAACCTAAAGATATAACAAGCTTAAGAGGATTTTCAGGCCTGACGGGTTACTATAGACGCTTTGTCAAGAGTTATGGAGAGATTGCAGCACCCTTGACCAAACTGCTGCAGAAGAATGCTTTCAAATGGGATGAGAACGCCACACTTGCATTTGAAAGTCTAAAAACAGCTATGACTACAATACCCGTGCTAGCACTACCCGATTGGTCTTTGCCTTTTATGATAGAGACTGATGCCTCTGGCAGTGGATTAGGAGCAGTACTGTCTCAGAACGGCCATCCCATCGCATTCTTCAGCCAGAAGTTGTCGCCAAGGGCCCAATCCAAATCCATCTATGAAAGAGAATTGATGGTTGTAGTACTATCAGTACAGAAGTGGCGGCATTATCTCATAGGAAGAAGGTTTACCATTGTATCGGACCAAAAAGCTCTAAAGTTCCTATTGGAGCAGAGGGAGGTTCAACCACAATTCCAAAAATGGTTAACCAAGCTGTTGGGATATGACTTTGAGATTCTATATCAACCAAGACTCCAAAATAAAGCAGCTGATGCACTTTGA

Protein sequence

MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHYLIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL

Homology

[Close]

BLAST of IVF0000908 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-44
Identity = 94/239 (39.33%), Postives = 143/239 (59.83%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           ++F  L D  L     KC F   +  +LGHI++ +G++ +  KV++++ +P P     +R
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENA---TLAFESLKTAMTTIPVLAL 120
            F GLTGYYR+F+ +Y +IA P+T  L+K   K D        AFE LK  +   P+L L
Sbjct: 443 AFLGLTGYYRKFIPNYADIAKPMTSCLKKRT-KIDTQKLEYIEAFEKLKALIIRDPILQL 502

Query: 121 PDWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKW 180
           PD+   F++ TDAS   LGAVLSQNGHPI+F S+ L+    + S  E+EL+ +V + + +
Sbjct: 503 PDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTF 562

Query: 181 RHYLIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
           RHYL+GR+F I SD + L++L   +E   + ++W  +L  Y F+I Y    +N  ADAL
Sbjct: 563 RHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADAL 620

[Close]

BLAST of IVF0000908 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-41
Identity = 85/238 (35.71%), Postives = 142/238 (59.66%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           ++F  L    L     KC F   +  +LGH+++ +G++ + +K+ ++ ++P P     ++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATL--AFESLKTAMTTIPVLALP 120
            F GLTGYYR+F+ ++ +IA P+TK L+KN      N     AF+ LK  ++  P+L +P
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 121 DWSLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWR 180
           D++  F + TDAS   LGAVLSQ+GHP+++ S+ L+    + S  E+EL+ +V + + +R
Sbjct: 504 DFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFR 563

Query: 181 HYLIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
           HYL+GR F I SD + L +L   ++   +  +W  KL  +DF+I Y    +N  ADAL
Sbjct: 564 HYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADAL 621

[Close]

BLAST of IVF0000908 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.7e-39
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLG--HIISKNGVEADQDKVRSMLQWPQPKDITS 60
           M+  I   +Q YANRKKC F   QI YLG  HIIS  GV AD  K+ +M+ WP+PK+ T 
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  LRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALP 120
           LRGF GLTGYYRRFVK+YG+I  PLT+LL+KN+ KW E A LAF++LK A+TT+PVLALP
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

Query: 121 DWSLPFM 126
           D  LPF+
Sbjct: 126 DLKLPFV 132

[Close]

BLAST of IVF0000908 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 81/253 (32.02%), Postives = 139/253 (54.94%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           ++ A L    L  N +K  F  +Q+ +LG+I++ +G++AD  KVR++ + P P  +  L+
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQ------------KNAFKWDENATLAFESLKTA 120
            F G+T YYR+F++ Y ++A PLT L +            K     DE A  +F  LK+ 
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSI 419

Query: 121 MTTIPVLALPDWSLPFMIETDASGSGLGAVLSQN----GHPIAFFSQKLSPRAQSKSIYE 180
           + +  +LA P ++ PF + TDAS   +GAVLSQ+      PIA+ S+ L+   ++ +  E
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

Query: 181 RELMVVVLSVQKWRHYLIGR-RFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEIL 237
           +E++ ++ S+   R YL G     + +D + L F L  R    + ++W  ++  Y+ E++
Sbjct: 480 KEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELI 539

[Close]

BLAST of IVF0000908 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.5e-35
Identity = 82/241 (34.02%), Postives = 134/241 (55.60%), Query Frame = 0


Query: 6   LRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLRGFSGL 65
           L++  L  N+ KC F  SQ++++G+ IS+ G    Q+ +  +LQW QPK+   LR F G 
Sbjct: 589 LKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGS 648

Query: 66  TGYYRRFVKSYGEIAAPLTKLLQKNA-FKWDENATLAFESLKTAMTTIPVLALPDWSLPF 125
             Y R+F+    ++  PL  LL+K+  +KW    T A E++K  + + PVL   D+S   
Sbjct: 649 VNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI 708

Query: 126 MIETDASGSGLGAVLSQNG-----HPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRH 185
           ++ETDAS   +GAVLSQ       +P+ ++S K+S    + S+ ++E++ ++ S++ WRH
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRH 768

Query: 186 YLIG--RRFTIVSDQKAL--KFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADA 237
           YL      F I++D + L  +   E      +  +W   L  ++FEI Y+P   N  ADA
Sbjct: 769 YLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADA 828

[Close]

BLAST of IVF0000908 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.6e-123
Identity = 222/236 (94.07%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           M+FAILRDNQLYANRKKCVFAHSQI+YLGHIISK+GVEADQDKVRSMLQWPQP+DIT LR
Sbjct: 662 MVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSMLQWPQPQDITGLR 721

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
           GF GLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLK AMTTIPVL LPDW
Sbjct: 722 GFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKLAMTTIPVLVLPDW 781

Query: 121 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
           SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLSVQKWRHY
Sbjct: 782 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSVQKWRHY 841

Query: 181 LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
           L+GRRFTI+SDQKALKFL EQREVQPQFQKWLTKLLG DFEILYQP LQNKAADAL
Sbjct: 842 LLGRRFTIISDQKALKFLSEQREVQPQFQKWLTKLLGNDFEILYQPGLQNKAADAL 897

[Close]

BLAST of IVF0000908 vs. ExPASy TrEMBL
Match: A0A5A7V529 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1505G00350 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121
Identity = 218/236 (92.37%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LR
Sbjct: 222 MVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLR 281

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
           GF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATLAFESLK+AMTTIPVLALPDW
Sbjct: 282 GFLGPTGYYRRFVKSYGEIAAPLTKLLHKNAFKWDENATLAFESLKSAMTTIPVLALPDW 341

Query: 121 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
           SLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HY
Sbjct: 342 SLPFMIETDASGSGLGAILSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSMQKWQHY 401

Query: 181 LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
           L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Sbjct: 402 LLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAVDAL 457

[Close]

BLAST of IVF0000908 vs. ExPASy TrEMBL
Match: A0A5D3DX13 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003250 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.6e-121
Identity = 217/236 (91.95%), Postives = 224/236 (94.92%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LR
Sbjct: 222 MVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLR 281

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
           GF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATLAFESLK+AMTTIPVL LPDW
Sbjct: 282 GFLGPTGYYRRFVKSYGEIAAPLTKLLHKNAFKWDENATLAFESLKSAMTTIPVLVLPDW 341

Query: 121 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
           SLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HY
Sbjct: 342 SLPFMIETDASGSGLGAILSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSMQKWQHY 401

Query: 181 LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
           L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Sbjct: 402 LLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAVDAL 457

[Close]

BLAST of IVF0000908 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-121
Identity = 216/236 (91.53%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1    MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
            M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LR
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
            GF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATLAFESLK+AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
            SLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
            L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADAL 1002

[Close]

BLAST of IVF0000908 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 8.0e-121
Identity = 216/236 (91.53%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1    MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
            M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LR
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
            GF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATLAFESLK+AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
            SLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 237
            L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADAL 1002

[Close]

BLAST of IVF0000908 vs. NCBI nr
Match: KAA0065995.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 451 bits (1161), Expect = 5.51e-150
Identity = 222/236 (94.07%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           M+FAILRDNQLYANRKKCVFAHSQI+YLGHIISK+GVEADQDKVRSMLQWPQP+DIT LR
Sbjct: 662 MVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSMLQWPQPQDITGLR 721

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
           GF GLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLK AMTTIPVL LPDW
Sbjct: 722 GFLGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKLAMTTIPVLVLPDW 781

Query: 121 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
           SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLSVQKWRHY
Sbjct: 782 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSVQKWRHY 841

Query: 181 LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 236
           L+GRRFTI+SDQKALKFL EQREVQPQFQKWLTKLLG DFEILYQP LQNKAADAL
Sbjct: 842 LLGRRFTIISDQKALKFLSEQREVQPQFQKWLTKLLGNDFEILYQPGLQNKAADAL 897

[Close]

BLAST of IVF0000908 vs. NCBI nr
Match: KAA0063362.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 447 bits (1151), Expect = 4.16e-148
Identity = 218/236 (92.37%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LR
Sbjct: 222 MVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLR 281

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
           GF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATLAFESLK+AMTTIPVLALPDW
Sbjct: 282 GFLGPTGYYRRFVKSYGEIAAPLTKLLHKNAFKWDENATLAFESLKSAMTTIPVLALPDW 341

Query: 121 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
           SLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HY
Sbjct: 342 SLPFMIETDASGSGLGAILSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSMQKWQHY 401

Query: 181 LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 236
           L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Sbjct: 402 LLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAVDAL 457

[Close]

BLAST of IVF0000908 vs. NCBI nr
Match: TYK28064.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 446 bits (1147), Expect = 1.64e-147
Identity = 217/236 (91.95%), Postives = 224/236 (94.92%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
           M+FAILRDNQLYANRKKCVFAHSQI YLGHIISK GVE DQDKVR MLQWPQPKDIT LR
Sbjct: 222 MVFAILRDNQLYANRKKCVFAHSQIHYLGHIISKQGVETDQDKVRCMLQWPQPKDITGLR 281

Query: 61  GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
           GF G TGYYRRFVKSYGEIAAPLTKLL KNAFKWDENATLAFESLK+AMTTIPVL LPDW
Sbjct: 282 GFLGPTGYYRRFVKSYGEIAAPLTKLLHKNAFKWDENATLAFESLKSAMTTIPVLVLPDW 341

Query: 121 SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
           SLPFMIETDASGSGLGA+LSQNGHPIAFFSQKLSPRAQSKSIYERELM VVLS+QKW+HY
Sbjct: 342 SLPFMIETDASGSGLGAILSQNGHPIAFFSQKLSPRAQSKSIYERELMAVVLSMQKWQHY 401

Query: 181 LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 236
           L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKA DAL
Sbjct: 402 LLGRRFTIISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAVDAL 457

[Close]

BLAST of IVF0000908 vs. NCBI nr
Match: TYJ96663.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 445 bits (1144), Expect = 1.44e-142
Identity = 216/236 (91.53%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1    MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
            M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LR
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
            GF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATLAFESLK+AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
            SLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 236
            L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADAL 1002

[Close]

BLAST of IVF0000908 vs. NCBI nr
Match: TYK21035.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 445 bits (1144), Expect = 1.44e-142
Identity = 216/236 (91.53%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1    MIFAILRDNQLYANRKKCVFAHSQIRYLGHIISKNGVEADQDKVRSMLQWPQPKDITSLR 60
            M+FA LRDNQLYANRKKCVFAHSQI YLGH+ISK+GVEADQDKV+SMLQWP+PKD+T LR
Sbjct: 767  MVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSMLQWPKPKDVTGLR 826

Query: 61   GFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALPDW 120
            GF GLTGYYRRFVK YGEIAAPLTKLLQKNAFKWDENATLAFESLK+AM+TIPVLALPDW
Sbjct: 827  GFLGLTGYYRRFVKGYGEIAAPLTKLLQKNAFKWDENATLAFESLKSAMSTIPVLALPDW 886

Query: 121  SLPFMIETDASGSGLGAVLSQNGHPIAFFSQKLSPRAQSKSIYERELMVVVLSVQKWRHY 180
            SLPFMIETDASGSGLGAVLSQN HPIAFFSQKLS RAQ+KSIYERELM VVLSVQKWRHY
Sbjct: 887  SLPFMIETDASGSGLGAVLSQNSHPIAFFSQKLSTRAQAKSIYERELMAVVLSVQKWRHY 946

Query: 181  LIGRRFTIVSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPRLQNKAADAL 236
            L+GRRFTI+SDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQP LQNKAADAL
Sbjct: 947  LLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADAL 1002

[Close]

BLAST of IVF0000908 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-40
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MIFAILRDNQLYANRKKCVFAHSQIRYLG--HIISKNGVEADQDKVRSMLQWPQPKDITS 60
           M+  I   +Q YANRKKC F   QI YLG  HIIS  GV AD  K+ +M+ WP+PK+ T 
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  LRGFSGLTGYYRRFVKSYGEIAAPLTKLLQKNAFKWDENATLAFESLKTAMTTIPVLALP 120
           LRGF GLTGYYRRFVK+YG+I  PLT+LL+KN+ KW E A LAF++LK A+TT+PVLALP
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

Query: 121 DWSLPFM 126
           D  LPF+
Sbjct: 126 DLKLPFV 132

The following BLAST results are available for this feature:

BLAST of IVF0000908 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.5e-44	39.33	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.6e-41	35.71	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P92523	5.7e-39	61.42	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8I7P9	1.3e-35	32.02	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	8.5e-35	34.02	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of IVF0000908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJU2	8.6e-123	94.07	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V529	1.2e-121	92.37	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DX13	3.6e-121	91.95	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3E325	8.0e-121	91.53	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH7	8.0e-121	91.53	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of IVF0000908 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065995.1	5.51e-150	94.07	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gyp...	[more]
KAA0063362.1	4.16e-148	92.37	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK28064.1	1.64e-147	91.95	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96663.1	1.44e-142	91.53	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21035.1	1.44e-142	91.53	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gyp...	[more]

BLAST of IVF0000908 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.0e-40	61.42	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 235..236
None	No IPR available	GENE3D	3.10.20.370		coord: 123..189 e-value: 4.5E-9 score: 38.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 6..212
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 6..212
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 126..236 e-value: 1.45845E-47 score: 151.491
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 94..188 e-value: 1.9E-31 score: 108.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..39 e-value: 1.3E-8 score: 37.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 41..122 e-value: 3.0E-26 score: 93.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000908.1	IVF0000908.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding