IVF0000890 (gene) Melon (IVF77) v1

Overview


Name	IVF0000890
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Late embryogenesis abundant protein
Location	chr08: 5397010 .. 5397685 (+)
RNA-Seq Expression	IVF0000890
Synteny	IVF0000890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCTATTGTCCTCACATCACCTCTTCCGCCGCAGCTTCGCCGTAGTATATGCTCGCTTGAGCTTCGATCCCGTCAAGCGACTGGTTTTGCCACCGCACCTGATCAGAATCCAAAGGACGAAGAAATGGATGAGTCTCAGAACAAAACCAAGGAGACTGGGTTAGTAGACTCCATTTTGTTGATTATTTTGGTCGACGATTATGCTTTTTTTCTTTAATTTATATATATTTTTATAAATTGTTTACGATTTTCATCCATTTTAAACCAACTATTGAATAAAATTTTAAAAAATAAAATATGTTTTAGAAATTTGAAACAAAATGATTGTCAGAATAGGACTTCATTTTTTGTTTTGTTTCTTTTAATTTTGGGGAGAAAACATATAACAAAACATTAAGTATGATTAGAAATTAAATGACAGAACATATAGAGAATTGTAGGTTTAAACGGGAATGACGAAGTTCTTCAATATGAATCGGTTGATGTGTGAAAACAGAGATATAATGTGTGATTCATTCGGGGAAGGGTATGCGACCCGAAGTGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAATGTTCTCGACGACGACGATGAAGAACACAGGAATAAAAAATCAGTCAATGAACATGGTAATTAA

mRNA sequence

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCTATTGTCCTCACATCACCTCTTCCGCCGCAGCTTCGCCGTAGTATATGCTCGCTTGAGCTTCGATCCCGTCAAGCGACTGGTTTTGCCACCGCACCTGATCAGAATCCAAAGGACGAAGAAATGGATGAGTCTCAGAACAAAACCAAGGAGACTGGAGATATAATGTGTGATTCATTCGGGGAAGGGTATGCGACCCGAAGTGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAATGTTCTCGACGACGACGATGAAGAACACAGGAATAAAAAATCAGTCAATGAACATGGTAATTAA

Coding sequence (CDS)

ATGATAAACGCAATCAGATTCGGCCGTACTCCACCGCCTATTGTCCTCACATCACCTCTTCCGCCGCAGCTTCGCCGTAGTATATGCTCGCTTGAGCTTCGATCCCGTCAAGCGACTGGTTTTGCCACCGCACCTGATCAGAATCCAAAGGACGAAGAAATGGATGAGTCTCAGAACAAAACCAAGGAGACTGGAGATATAATGTGTGATTCATTCGGGGAAGGGTATGCGACCCGAAGTGAGGAAGAAGGATTTGGAGGAACTTATGGAGGGAATGTTCTCGACGACGACGATGAAGAACACAGGAATAAAAAATCAGTCAATGAACATGGTAATTAA

Protein sequence

MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNKTKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEHGN

Homology

[Close]

BLAST of IVF0000890 vs. ExPASy TrEMBL
Match: A0A5D3CN97 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002150 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 111
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110

[Close]

BLAST of IVF0000890 vs. ExPASy TrEMBL
Match: A0A1S3B3C5 (uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 111
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110

[Close]

BLAST of IVF0000890 vs. ExPASy TrEMBL
Match: A0A0A0KGG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 91/110 (82.73%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR I S EL SRQA  FATAPD+NPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ISSPELPSRQAISFATAPDRNPKCEEMDDSQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 111
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG     DD+EH NKK VN+H
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQH 109

[Close]

BLAST of IVF0000890 vs. ExPASy TrEMBL
Match: A0A6J1BUB9 (uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005770 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.3e-25
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           M +AIR GR+PPP VLT+PLPPQLRR   S ELRSRQ  G ATAP     D  MD+S+N 
Sbjct: 1   MFHAIRLGRSPPPSVLTTPLPPQLRRR-SSPELRSRQVIGLATAPADQSSD-NMDDSKNT 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRN 104
            K+TGDIM  SFGEGYATRS+EEGFGG YGGN  DDDD E +N
Sbjct: 61  VKKTGDIMSHSFGEGYATRSDEEGFGGIYGGNRSDDDDTEGKN 101

[Close]

BLAST of IVF0000890 vs. ExPASy TrEMBL
Match: A0A6J1IUE6 (uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.1e-25
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
          MINAIRFGR+PPPIVLT PLPPQLRR + S ELRSRQ  GF+TAPDQNP++  MD+S+N 
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRR-VDSPELRSRQLIGFSTAPDQNPRN--MDDSKNT 60

Query: 61 TKETGDIMCDSFGEGYATRSEEEGFGGTY 90
           K+TGDIM DSFG+ YA RSE EGFGG Y
Sbjct: 61 AKQTGDIMTDSFGQAYACRSEYEGFGGIY 86

[Close]

BLAST of IVF0000890 vs. NCBI nr
Match: XP_008441122.1 (PREDICTED: uncharacterized protein LOC103485350 [Cucumis melo] >KAA0036233.1 late embryogenesis abundant protein [Cucumis melo var. makuwa] >TYK12628.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 5.66e-72
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110

[Close]

BLAST of IVF0000890 vs. NCBI nr
Match: XP_011658492.1 (uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical protein Csa_003589 [Cucumis sativus])

HSP 1 Score: 174 bits (440), Expect = 1.52e-53
Identity = 91/110 (82.73%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           MINAIRFGRTPPPIVLTSPLPP+LRR I S EL SRQA  FATAPD+NPK EEMD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRR-ISSPELPSRQAISFATAPDRNPKCEEMDDSQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEH 110
           TKETGDIMCDSFGEGYATRSEEEGFGGTYGG     DD+EH NKK VN+H
Sbjct: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPVNQH 109

[Close]

BLAST of IVF0000890 vs. NCBI nr
Match: XP_038883658.1 (uncharacterized protein LOC120074572 [Benincasa hispida])

HSP 1 Score: 154 bits (390), Expect = 6.09e-46
Identity = 86/112 (76.79%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           MINAIRFGRTPPPIVLTSPLPPQLRR ICS ELRSRQA G ATAPDQN  D  MD+SQNK
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRR-ICSPELRSRQAIGLATAPDQNSND--MDDSQNK 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSVNEHGN 112
            KETGDIMCDSFGE YATRSEEEGFGGTYG N   DD+ +++   S   HGN
Sbjct: 61  AKETGDIMCDSFGEAYATRSEEEGFGGTYGRNQPSDDETDNKKWPS---HGN 106

[Close]

BLAST of IVF0000890 vs. NCBI nr
Match: XP_022133090.1 (uncharacterized protein LOC111005770 [Momordica charantia])

HSP 1 Score: 124 bits (311), Expect = 6.70e-34
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
           M +AIR GR+PPP VLT+PLPPQLRR   S ELRSRQ  G ATAP     D  MD+S+N 
Sbjct: 1   MFHAIRLGRSPPPSVLTTPLPPQLRRR-SSPELRSRQVIGLATAPADQSSDN-MDDSKNT 60

Query: 61  TKETGDIMCDSFGEGYATRSEEEGFGGTYGGNVLDDDDEEHRN 103
            K+TGDIM  SFGEGYATRS+EEGFGG YGGN  DDDD E +N
Sbjct: 61  VKKTGDIMSHSFGEGYATRSDEEGFGGIYGGNRSDDDDTEGKN 101

[Close]

BLAST of IVF0000890 vs. NCBI nr
Match: XP_022978574.1 (uncharacterized protein LOC111478513 [Cucurbita maxima])

HSP 1 Score: 123 bits (308), Expect = 1.86e-33
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60
          MINAIRFGR+PPPIVLT PLPPQLRR + S ELRSRQ  GF+TAPDQNP++  MD+S+N 
Sbjct: 1  MINAIRFGRSPPPIVLTLPLPPQLRR-VDSPELRSRQLIGFSTAPDQNPRN--MDDSKNT 60

Query: 61 TKETGDIMCDSFGEGYATRSEEEGFGGTY 89
           K+TGDIM DSFG+ YA RSE EGFGG Y
Sbjct: 61 AKQTGDIMTDSFGQAYACRSEYEGFGGIY 86

[Close]

BLAST of IVF0000890 vs. TAIR 10
Match: AT5G66780.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELR-SRQATG--FATAPDQNPKDEEMDES 60
           MINA +  R+         LP     S CS   R  R+ TG  FAT  DQ   D+   + 
Sbjct: 1   MINAFKTIRS---------LPSNTTVSFCSTPSRLGRKVTGVSFATTSDQQKMDK---KP 60

Query: 61  QNKTKETGDIMCDSFGEGYATRSEEEGFGGTYGGN-VLDDDDEEHRN 104
           +N  ++TGD+M  S+GEGYATRS+EEGFGG YGGN  L  ++E H N
Sbjct: 61  ENPNEKTGDVMSHSYGEGYATRSDEEGFGGIYGGNQTLQKENEIHEN 95

The following BLAST results are available for this feature:

BLAST of IVF0000890 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CN97	1.8e-54	100.00	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B3C5	1.8e-54	100.00	uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=...	[more]
A0A0A0KGG3	1.9e-40	82.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1	[more]
A0A6J1BUB9	2.3e-25	66.99	uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1IUE6	5.1e-25	73.03	uncharacterized protein LOC111478513 OS=Cucurbita maxima OX=3661 GN=LOC111478513...	[more]

BLAST of IVF0000890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441122.1	5.66e-72	100.00	PREDICTED: uncharacterized protein LOC103485350 [Cucumis melo] >KAA0036233.1 lat...	[more]
XP_011658492.1	1.52e-53	82.73	uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical ...	[more]
XP_038883658.1	6.09e-46	76.79	uncharacterized protein LOC120074572 [Benincasa hispida]	[more]
XP_022133090.1	6.70e-34	66.99	uncharacterized protein LOC111005770 [Momordica charantia]	[more]
XP_022978574.1	1.86e-33	73.03	uncharacterized protein LOC111478513 [Cucurbita maxima]	[more]

BLAST of IVF0000890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66780.1	3.8e-12	44.86	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..112
None	No IPR available	PANTHER	PTHR36410:SF1	EXPRESSED PROTEIN	coord: 1..106
None	No IPR available	PANTHER	PTHR36410	EXPRESSED PROTEIN	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000890.1	IVF0000890.1	mRNA