IVF0000874 (gene) Melon (IVF77) v1

Overview


Name	IVF0000874
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	TPRXL protein
Location	chr10: 7895295 .. 7895534 (-)
RNA-Seq Expression	IVF0000874
Synteny	IVF0000874

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTACAGACAAAATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACATGTATGCTAAGGAGTACTGGAACTAATTAACATGGAAAATGGTGGTCGTTGTCAAGTTACTATGATGTTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTATGTACATAA

mRNA sequence

ATGGAAGAAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTACAGACAAAATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACATGTATTTACTATGATGTTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTATGTACATAA

Coding sequence (CDS)

ATGGAAGAAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTACAGACAAAATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACATGTATTTACTATGATGTTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTATGTACATAA

Protein sequence

MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQKETCIYYDVVKGEGNNNVNPTMILCT

Homology

[Close]

BLAST of IVF0000874 vs. ExPASy TrEMBL
Match: A0A5A7UKK3 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001080 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQKETCI----------------YYD 59
          ME NEESIKNKEKVKSLL+LLQ  ++ERDEARDQLQKET                  YYD
Sbjct: 6  MEANEESIKNKEKVKSLLILLQAAHDERDEARDQLQKETMCAEEYWNQHEKWWSLSSYYD 65

[Close]

BLAST of IVF0000874 vs. ExPASy TrEMBL
Match: A0A6J1L7E2 (uncharacterized protein LOC111499860 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499860 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 12 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 48

[Close]

BLAST of IVF0000874 vs. ExPASy TrEMBL
Match: A0A6J1JHW9 (uncharacterized protein LOC111484506 OS=Cucurbita maxima OX=3661 GN=LOC111484506 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 83

[Close]

BLAST of IVF0000874 vs. ExPASy TrEMBL
Match: A0A6J1KYE1 (uncharacterized protein LOC111499860 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499860 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 61 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 97

[Close]

BLAST of IVF0000874 vs. ExPASy TrEMBL
Match: A0A6J1D3L3 (uncharacterized protein LOC111016987 OS=Momordica charantia OX=3673 GN=LOC111016987 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 61 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 97

[Close]

BLAST of IVF0000874 vs. NCBI nr
Match: KAA0054205.1 (TPRXL protein [Cucumis melo var. makuwa] >TYK15058.1 TPRXL protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.98e-16
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQKETCI----------------YYD 58
          ME NEESIKNKEKVKSLL+LLQ  ++ERDEARDQLQKET                  YYD
Sbjct: 6  MEANEESIKNKEKVKSLLILLQAAHDERDEARDQLQKETMCAEEYWNQHEKWWSLSSYYD 65

[Close]

BLAST of IVF0000874 vs. NCBI nr
Match: XP_023007333.1 (uncharacterized protein LOC111499860 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 2.36e-09
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 37
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 12 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 48

[Close]

BLAST of IVF0000874 vs. NCBI nr
Match: KAG7010574.1 (hypothetical protein SDJN02_27368 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 2.49e-09
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 37
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 33 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

[Close]

BLAST of IVF0000874 vs. NCBI nr
Match: KAG6570730.1 (hypothetical protein SDJN03_29645, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 2.49e-09
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 37
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 33 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

[Close]

BLAST of IVF0000874 vs. NCBI nr
Match: XP_022986908.1 (uncharacterized protein LOC111484506 [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 2.64e-09
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 37
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 83

The following BLAST results are available for this feature:

BLAST of IVF0000874 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000874 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKK3	1.8e-11	62.16	TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001080 ...	[more]
A0A6J1L7E2	5.9e-07	91.89	uncharacterized protein LOC111499860 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JHW9	5.9e-07	91.89	uncharacterized protein LOC111484506 OS=Cucurbita maxima OX=3661 GN=LOC111484506...	[more]
A0A6J1KYE1	5.9e-07	91.89	uncharacterized protein LOC111499860 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1D3L3	5.9e-07	91.89	uncharacterized protein LOC111016987 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of IVF0000874 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054205.1	1.98e-16	62.16	TPRXL protein [Cucumis melo var. makuwa] >TYK15058.1 TPRXL protein [Cucumis melo...	[more]
XP_023007333.1	2.36e-09	91.89	uncharacterized protein LOC111499860 isoform X2 [Cucurbita maxima]	[more]
KAG7010574.1	2.49e-09	91.89	hypothetical protein SDJN02_27368 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6570730.1	2.49e-09	91.89	hypothetical protein SDJN03_29645, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022986908.1	2.64e-09	91.89	uncharacterized protein LOC111484506 [Cucurbita maxima]	[more]

BLAST of IVF0000874 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000874.1	IVF0000874.1	mRNA