IVF0000848 (gene) Melon (IVF77) v1

Overview
NameIVF0000848
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr01: 8763363 .. 8763820 (+)
RNA-Seq ExpressionIVF0000848
SyntenyIVF0000848
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTTGTAAAGGGGTTTCTACTGTGGCTCCAAGAGCTAAGATCAAAGGAGATACACACTTGGTGTATCAGGTAAGTGAGATTTGAATGACCCTTCTCGTGGTTGGTTCTCTAGGCAGCACAGTTCAGGGAGTACCTTTTAGAGGCAGAGTCAAAGGACTCTTAGTCAGTCGGCTAGATCGACGACTTTTTCTAGAGCAAGGCAAGTGTCTCTAGTTGGTGCAGCATCAAAGTCATGTCTTGTTGGGGTGGATGTGTGCTACCACTGCAAGTAGGTAGATCACTGTAAGAGAGATTGCTCACAGTTGAAAGCAGAGATACAGAGCAACCAGAGGGTTGAGTCTTGGACAATAGAGCAGCTGAAAACTTCAGAGGCTGGAGGAGAGAAGACTAATGGGTCGAAGCAGATGGAGTTGTGGGAAGACCTTACCAACAGGGCAAGGTGTACGCCATGA

mRNA sequence

ATGGAGCCTTGTAAAGGGGTTTCTACTGTGGCTCCAAGAGCTAAGATCAAAGGAGATACACACTTGGTGTATCAGGTAGATCACTGTAAGAGAGATTGCTCACAGTTGAAAGCAGAGATACAGAGCAACCAGAGGGTTGAGTCTTGGACAATAGAGCAGCTGAAAACTTCAGAGGCTGGAGGAGAGAAGACTAATGGGTCGAAGCAGATGGAGTTGTGGGAAGACCTTACCAACAGGGCAAGGTGTACGCCATGA

Coding sequence (CDS)

ATGGAGCCTTGTAAAGGGGTTTCTACTGTGGCTCCAAGAGCTAAGATCAAAGGAGATACACACTTGGTGTATCAGGTAGATCACTGTAAGAGAGATTGCTCACAGTTGAAAGCAGAGATACAGAGCAACCAGAGGGTTGAGTCTTGGACAATAGAGCAGCTGAAAACTTCAGAGGCTGGAGGAGAGAAGACTAATGGGTCGAAGCAGATGGAGTTGTGGGAAGACCTTACCAACAGGGCAAGGTGTACGCCATGA

Protein sequence

MEPCKGVSTVAPRAKIKGDTHLVYQVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNGSKQMELWEDLTNRARCTP
Homology
[Close]
BLAST of IVF0000848 vs. ExPASy TrEMBL
Match: A0A5A7U053 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00420 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 7  VSTVAPRAKIKGDTHLVYQVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG 66
          V  V  R ++KG       VDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG
Sbjct: 13 VQGVPFRGRVKG-----LLVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG 72

Query: 67 SKQMELWEDLTNRARC 83
          SKQMELWEDLTNRARC
Sbjct: 73 SKQMELWEDLTNRARC 83

[Close]
BLAST of IVF0000848 vs. NCBI nr
Match: KAA0048780.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK31553.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 2.22e-31
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0 

Query: 7  VSTVAPRAKIKGDTHLVYQVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG 66
          V  V  R ++KG       VDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG
Sbjct: 13 VQGVPFRGRVKG-----LLVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG 72

Query: 67 SKQMELWEDLTNRARC 82
          SKQMELWEDLTNRARC
Sbjct: 73 SKQMELWEDLTNRARC 83

[Close]
BLAST of IVF0000848 vs. NCBI nr
Match: KAA0066738.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK27886.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 2.39e-04
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 28  HCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNGSKQ 69
           H KRDC QL+  ++ +QRVES T+EQL+ S A GE T+G++Q
Sbjct: 355 HFKRDCPQLRVAVRRDQRVESHTVEQLRISTAAGEGTSGARQ 396

[Close]
BLAST of IVF0000848 vs. NCBI nr
Match: KAA0025360.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK23442.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 5.99e-04
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0 

Query: 2  EPCKGVSTVAPRAKIKGDTHLVYQVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGG 61
          +P  G  +VA  ++    T    Q  H KRDC QL+  IQ +Q VES TIEQ + S A G
Sbjct: 24 KPPTGQESVATESR---RTPCCGQTGHFKRDCPQLRVAIQRDQGVESHTIEQPRISAAAG 83

Query: 62 EKTNGSKQ 69
          E T+G++Q
Sbjct: 84 EGTSGARQ 88

The following BLAST results are available for this feature:
BLAST of IVF0000848 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0000848 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0531.5e-2481.58DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of IVF0000848 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048780.12.22e-3181.58DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK31553.1 D... [more]
KAA0066738.12.39e-0454.76DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK27886.1 D... [more]
KAA0025360.15.99e-0444.12DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK23442.1 D... [more]
BLAST of IVF0000848 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000848.1IVF0000848.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0016779 nucleotidyltransferase activity