IVF0000825 (gene) Melon (IVF77) v1

Overview


Name	IVF0000825
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr11: 18858807 .. 18859763 (-)
RNA-Seq Expression	IVF0000825
Synteny	IVF0000825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTTGACACATTTTCCAGAGGTATAGATCGGGAAGTGAGCTCATTGGAGGAAGAATTAAGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTCACGAACGCTCGACCGATGTCGAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGAACTTCTGGTGTTCGTCACAAGAAAACGCGAGCGAGAATACCCTGGACTCAGTTTTCTTGTCCTCGTGTAAAAATTGGTCCCCCCGACGGTTTCTTCCCTTTTCTTTGTATTGGTCATAAGTCTTTCGATCCTCGGGGCTTGTACTCCAAGGACTTCAACCCACACTCCTGGCAAGCTCTCAGACACGTTTTCCAAAGGTATAGTCGAGAAGCGAGCTATTTGGAGGAAGAACTGAGGTGCGACCCAAACAGTTCAAAAGATGGCCAATGCTTCCAACGAGTAGTGAACGTTCGTTCGATTAGAAACCACTGGAAATGGACTTGCGATGAAGGAAACGGGTTGAGCTCAAGGACTTAAAGTGTTCGTCCCAAGAAAATGCAAGCGAGAAAGCCCCGAACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGTTCTCCCGACGGTTTCTTCCTTTTGCTTCGTATTGGTCTTAATTTTTTCGATCTTTAAGGCTTGTACTCCGAGGACTTCAACCAACACTTTTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGTCAGAAGGCGAGATCGTTCGAGGGAGAACGGAGGTGAGACTCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACATGTGGCAGACGCTCGTCCAGTGTCATAAACCACTGGAAATGCACTTGCAGTGAAGGAAATGGGCTGAGCTCGAGGACATCCAGTGTTCATCCCATGAAAACGCGAGCGAGAATGCTCCGGACTCAATTTTCTCGTCTTGGGTAA

mRNA sequence

ATGCTGCTTGACACATTTTCCAGAGGTATAGATCGGGAAGTGAGCTCATTGGAGGAAGAATTAAGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTCACGAACGCTCGACCGATGTCGAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGAACTTCTGGTGTTCGTCACAAGAAAACGCGAGCGAGAATACCCTGGACTCAGTTTTCTTGTCCTCGTGTAAAAATTGGTCCCCCCGACGGTTTCTTCCCTTTTCTTTGTATTGGTCATAAGTCTTTCGATCCTCGGGGCTTGTACTCCAAGGACTTCAACCCACACTCCTGGCAAGCTCTCAGACACGTTTTCCAAAGGTATAGTCGAGAAGCGAGCTATTTGGAGGAAGAACTGAGGAAACGGGTTGAGCTCAAGGACTTAAAGTGTTCGTCCCAAGAAAATGCAAGCGAGAAAGCCCCGAACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGTTCTCCCGACGGTTTCTTCCTTTTGACTTCAACCAACACTTTTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGTCAGAAGGCGAGATCGTTCGAGGGAGAACGGAGTGAAGGAAATGGGCTGAGCTCGAGGACATCCAGTGTTCATCCCATGAAAACGCGAGCGAGAATGCTCCGGACTCAATTTTCTCGTCTTGGGTAA

Coding sequence (CDS)

ATGCTGCTTGACACATTTTCCAGAGGTATAGATCGGGAAGTGAGCTCATTGGAGGAAGAATTAAGGTGCAACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTCACGAACGCTCGACCGATGTCGAAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGAACTTCTGGTGTTCGTCACAAGAAAACGCGAGCGAGAATACCCTGGACTCAGTTTTCTTGTCCTCGTGTAAAAATTGGTCCCCCCGACGGTTTCTTCCCTTTTCTTTGTATTGGTCATAAGTCTTTCGATCCTCGGGGCTTGTACTCCAAGGACTTCAACCCACACTCCTGGCAAGCTCTCAGACACGTTTTCCAAAGGTATAGTCGAGAAGCGAGCTATTTGGAGGAAGAACTGAGGAAACGGGTTGAGCTCAAGGACTTAAAGTGTTCGTCCCAAGAAAATGCAAGCGAGAAAGCCCCGAACTCAGTTTTCTCGTCCTGGGGTAAAAAGTGTTCTCCCGACGGTTTCTTCCTTTTGACTTCAACCAACACTTTTGACATGCTCGCTGACACGTTTTCCCAAGGTATAGGTCAGAAGGCGAGATCGTTCGAGGGAGAACGGAGTGAAGGAAATGGGCTGAGCTCGAGGACATCCAGTGTTCATCCCATGAAAACGCGAGCGAGAATGCTCCGGACTCAATTTTCTCGTCTTGGGTAA

Protein sequence

MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGHKSFDPRGLYSKDFNPHSWQALRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLTSTNTFDMLADTFSQGIGQKARSFEGERSEGNGLSSRTSSVHPMKTRARMLRTQFSRLG

Homology

[Close]

BLAST of IVF0000825 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-32
Identity = 117/284 (41.20%), Postives = 132/284 (46.48%), Query Frame = 0


Query: 1   MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
           MLLD F +GI R+ SSL+ ELRC+PKRSKRWPML    ERS  V NHWK TC+E N LSS
Sbjct: 297 MLLDMFCQGIGRDASSLQRELRCDPKRSKRWPMLRMRGERSYGVRNHWKSTCNERNRLSS 356

Query: 61  RTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGHKSFDPRGLYSKDFNPHSWQA 120
           RT  VRHK T+AR P T    P                        G+    F+      
Sbjct: 357 RTFDVRHKITQARTPRTSTHTP------------------------GMLPNTFS------ 416

Query: 121 LRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCS---PDGF 180
                Q   REAS LE EL KR  L     S       K  +SVFSSW K  S      +
Sbjct: 417 -----QGIGREASLLEGELSKRNRLS----SRNSGVRPKKMDSVFSSWSKTWSQTVSSLY 476

Query: 181 FLL-------------TSTNTFDMLADTFSQGIGQKARSFEGER---------------- 238
           FLL             TST+T DML D FSQGIG++A S EGE                 
Sbjct: 477 FLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTS 536

[Close]

BLAST of IVF0000825 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 103/239 (43.10%), Postives = 123/239 (51.46%), Query Frame = 0


Query: 4    DTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTS 63
            D F   + RE SSLEEEL C+ KRSKRWPM PT+ ERS+ V NHWKCTCSEGNGL+SRTS
Sbjct: 1468 DVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTS 1527

Query: 64   GVRHKKTRARIPWTQFSCPRVKIGPP--DGFFPFLCIGHKSFDPRGLYSKDFNPHSWQAL 123
            G   KKTRAR+P +QFS    K   P        L I    F+ R   +   + H+   L
Sbjct: 1528 GASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEAR---TPRTSTHTTGML 1587

Query: 124  RHVFQR-YSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLL 183
              +F R   +EAS LE EL                            W   C+P      
Sbjct: 1588 PDMFSRGIGQEASSLEGEL----------------------------W---CNP------ 1647

Query: 184  TSTNTFDMLADTFSQGIGQKARSFEGERSEGNGLSSRTSSVHPMKTRARMLRTQFSRLG 240
              +  + ML  +  +  G +    +  R EGNGLSSRT S HP KTRARM RTQFSR G
Sbjct: 1648 KRSKRWTMLPTSVERSSGIR-NHLKCTRCEGNGLSSRTLSAHPKKTRARMPRTQFSRAG 1665

[Close]

BLAST of IVF0000825 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-27
Identity = 82/164 (50.00%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 1   MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
           ML DTFS+GI ++ SSLE E RC+PK+SK WPMLPT  +RS+ V+NHWKCTC E N LSS
Sbjct: 89  MLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCTCREENRLSS 148

Query: 61  RTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGHKSFDPRGLYSKDFNPHSWQA 120
           RTS VR KKTRAR+P TQFS P V+        P  C   K     G       P   Q 
Sbjct: 149 RTSSVRPKKTRARMPRTQFSRPVVR-------KPTRCWEKKGATQNG-------PKDGQC 208

Query: 121 LRHVFQRY-SREASYLEEELRKRVELKDLKCSSQENASEKAPNS 164
            + V       EA+      RK +EL+D +CSSQENAS  A +S
Sbjct: 209 FQQVTNTLPMSEATGNALPTRKWIELEDFQCSSQENASVNAADS 238

[Close]

BLAST of IVF0000825 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.8e-27
Identity = 65/87 (74.71%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
          ML D FS GI RE +SLE EL C+PKRSKRWPMLPTS ERS+   NHWKCTCSEGNGLSS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 RTSGVRHKKTRARIPWTQFSCPRVKIG 88
          RTSG R KKTRA +P TQFS P VK G
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRPGVKSG 87

[Close]

BLAST of IVF0000825 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.5e-26
Identity = 64/84 (76.19%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1   MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
           ML DTFS GI RE SSLE EL C+PKRSKRWP LPTS ERS+ V NHWKCTCSEGNGLSS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  RTSGVRHKKTRARIPWTQFSCPRV 85
           RTSG R KKT A +P TQFS P V
Sbjct: 239 RTSGARPKKTPAGMPRTQFSRPGV 262

[Close]

BLAST of IVF0000825 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 1.15e-37
Identity = 117/284 (41.20%), Postives = 132/284 (46.48%), Query Frame = 0


Query: 1   MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
           MLLD F +GI R+ SSL+ ELRC+PKRSKRWPML    ERS  V NHWK TC+E N LSS
Sbjct: 297 MLLDMFCQGIGRDASSLQRELRCDPKRSKRWPMLRMRGERSYGVRNHWKSTCNERNRLSS 356

Query: 61  RTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGHKSFDPRGLYSKDFNPHSWQA 120
           RT  VRHK T+AR P T    P                        G+    F+      
Sbjct: 357 RTFDVRHKITQARTPRTSTHTP------------------------GMLPNTFS------ 416

Query: 121 LRHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDG---F 180
                Q   REAS LE EL KR  L     S       K  +SVFSSW K  S      +
Sbjct: 417 -----QGIGREASLLEGELSKRNRLS----SRNSGVRPKKMDSVFSSWSKTWSQTVSSLY 476

Query: 181 FLL-------------TSTNTFDMLADTFSQGIGQKARSFEGER---------------- 237
           FLL             TST+T DML D FSQGIG++A S EGE                 
Sbjct: 477 FLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTS 536

[Close]

BLAST of IVF0000825 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (367), Expect = 9.11e-36
Identity = 105/269 (39.03%), Postives = 116/269 (43.12%), Query Frame = 0


Query: 4    DTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSSRTS 63
            D F   + RE SSLEEEL C+ KRSKRWPM PT+ ERS+ V NHWKCTCSEGNGL+SRTS
Sbjct: 1468 DVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTS 1527

Query: 64   GVRHKKTRARIPWTQFSCPRVKIGPP--DGFFPFLCIGHKSFDPRGLYSKDFNPHSWQAL 123
            G   KKTRAR+P +QFS    K   P        L I    F+ R               
Sbjct: 1528 GASPKKTRARMPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEAR--------------- 1587

Query: 124  RHVFQRYSREASYLEEELRKRVELKDLKCSSQENASEKAPNSVFSSWGKKCSPDGFFLLT 183
                                                   P                   T
Sbjct: 1588 --------------------------------------TPR------------------T 1647

Query: 184  STNTFDMLADTFSQGIGQKARSFEGE-------------------------------RSE 239
            ST+T  ML D FS+GIGQ+A S EGE                               R E
Sbjct: 1648 STHTTGMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTMLPTSVERSSGIRNHLKCTRCE 1665

[Close]

BLAST of IVF0000825 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (336), Expect = 1.33e-34
Identity = 65/87 (74.71%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
          ML D FS GI RE +SLE EL C+PKRSKRWPMLPTS ERS+   NHWKCTCSEGNGLSS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 RTSGVRHKKTRARIPWTQFSCPRVKIG 87
          RTSG R KKTRA +P TQFS P VK G
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRPGVKSG 87

[Close]

BLAST of IVF0000825 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 5.33e-33
Identity = 82/164 (50.00%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 1   MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
           ML DTFS+GI ++ SSLE E RC+PK+SK WPMLPT  +RS+ V+NHWKCTC E N LSS
Sbjct: 89  MLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCTCREENRLSS 148

Query: 61  RTSGVRHKKTRARIPWTQFSCPRVKIGPPDGFFPFLCIGHKSFDPRGLYSKDFNPHSWQA 120
           RTS VR KKTRAR+P TQFS P V+        P  C   K     G       P   Q 
Sbjct: 149 RTSSVRPKKTRARMPRTQFSRPVVRK-------PTRCWEKKGATQNG-------PKDGQC 208

Query: 121 LRHVFQRYSR-EASYLEEELRKRVELKDLKCSSQENASEKAPNS 163
            + V       EA+      RK +EL+D +CSSQENAS  A +S
Sbjct: 209 FQQVTNTLPMSEATGNALPTRKWIELEDFQCSSQENASVNAADS 238

[Close]

BLAST of IVF0000825 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 1.99e-32
Identity = 64/84 (76.19%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1   MLLDTFSRGIDREVSSLEEELRCNPKRSKRWPMLPTSHERSTDVENHWKCTCSEGNGLSS 60
           ML DTFS GI RE SSLE EL C+PKRSKRWP LPTS ERS+ V NHWKCTCSEGNGLSS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  RTSGVRHKKTRARIPWTQFSCPRV 84
           RTSG R KKT A +P TQFS P V
Sbjct: 239 RTSGARPKKTPAGMPRTQFSRPGV 262

The following BLAST results are available for this feature:

BLAST of IVF0000825 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIF8	3.2e-32	41.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5A7V5J2	1.3e-30	43.10	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3E5W4	4.0e-27	50.00	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SLK2	6.8e-27	74.71	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7VGB1	7.5e-26	76.19	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]

BLAST of IVF0000825 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23424.1	1.15e-37	41.20	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062888.1	9.11e-36	39.03	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0026022.1	1.33e-34	74.71	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0035524.1	5.33e-33	50.00	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0066117.1	1.99e-32	76.19	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]

BLAST of IVF0000825 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000825.1	IVF0000825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0046872	metal ion binding