IVF0000820 (gene) Melon (IVF77) v1

Overview
NameIVF0000820
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr09: 5341165 .. 5341497 (+)
RNA-Seq ExpressionIVF0000820
SyntenyIVF0000820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATAGCTCGCGTGCGGCTTGGGTGTGGCTCAGAGACGACTTGGAGTTCGTGTGACTTGCGAGGGTTAACAGCTGGGGTGGTTTCAACTTGGCCGACGATCGATAACTACACGGTGAACGACAAAGACGAACGAAGATTTGCAGTGTAGGCTTCGACGGTTGGGCACGAAGGACGCGAACCGAAGATCATAACAGTCAACATCTATGAGCGAAGAAACGAACGACTTGCGACGATGAAATTGGGCTCGGTAAGGTGGATCAACACGAAACTTCGGCTAGGGTTGACGACAAGGTCTGATGGCGGTGGAGGCTCGTCGACGGCGGAATAG

mRNA sequence

ATGCAAATAGCTCGCGTGCGGCTTGGGTGTGGCTCAGAGACGACTTGGAGTTCGTGTGACTTGCGAGGGTTAACAGCTGGGGTGGTTTCAACTTGGCCGACGATCGATAACTACACGGCTTCGACGGTTGGGCACGAAGGACGCGAACCGAAGATCATAACAGTCAACATCTATGAGCGAAGAAACGAACGACTTGCGACGATGAAATTGGGCTCGGTAAGGTGGATCAACACGAAACTTCGGCTAGGGTTGACGACAAGGTCTGATGGCGGTGGAGGCTCGTCGACGGCGGAATAG

Coding sequence (CDS)

ATGCAAATAGCTCGCGTGCGGCTTGGGTGTGGCTCAGAGACGACTTGGAGTTCGTGTGACTTGCGAGGGTTAACAGCTGGGGTGGTTTCAACTTGGCCGACGATCGATAACTACACGGCTTCGACGGTTGGGCACGAAGGACGCGAACCGAAGATCATAACAGTCAACATCTATGAGCGAAGAAACGAACGACTTGCGACGATGAAATTGGGCTCGGTAAGGTGGATCAACACGAAACTTCGGCTAGGGTTGACGACAAGGTCTGATGGCGGTGGAGGCTCGTCGACGGCGGAATAG

Protein sequence

MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYTASTVGHEGREPKIITVNIYERRNERLATMKLGSVRWINTKLRLGLTTRSDGGGGSSTAE
Homology
[Close]
BLAST of IVF0000820 vs. ExPASy TrEMBL
Match: A0A5D3DH42 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00240 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYTAS 42
           MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYT +
Sbjct: 796 MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYTVN 836

[Close]
BLAST of IVF0000820 vs. NCBI nr
Match: TYK22885.1 (hypothetical protein E5676_scaffold334G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 7.47e-17
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYTAS 41
           MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYT +
Sbjct: 796 MQIARVRLGCGSETTWSSCDLRGLTAGVVSTWPTIDNYTVN 836

The following BLAST results are available for this feature:
BLAST of IVF0000820 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0000820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DH426.1e-1495.12Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of IVF0000820 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22885.17.47e-1795.12hypothetical protein E5676_scaffold334G00240 [Cucumis melo var. makuwa][more]
BLAST of IVF0000820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000820.1IVF0000820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding