IVF0000781 (gene) Melon (IVF77) v1

Overview


Name	IVF0000781
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U6 snRNA-associated Sm-like protein LSm4
Location	chr01: 8510454 .. 8513453 (-)
RNA-Seq Expression	IVF0000781
Synteny	IVF0000781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAAGGAACAAAATGCACAAACCAACAAAAAAAAAAAACACAATGGAGATGAACCCAACACAAATGGACCTCCCATGCACTCCAACGTGTTAGGGATGAGGCAATGTATTTTGGCGATGCGTGAAGGTCATGTGCGGCTAATTCTGGCGAGCGAAGAACTCAGATAGGGGCGGATGGTGGTAGCGCTCCTTCTGAGGTGTGCGATGTCAACAAACGGCCACTCGTACTTGGTGACCAAACTTAAACCCTAACGGAATGTAGTTGTCAAAGAATAAACAAATAGACGAATGTCCCGAACCCTAGATTACTTGGATACCATGTTGTAGTTAGAGTGAAATATTAAATAACTCCCTTACTTAATTCTATACAACATATATGGGCATTCCTGAAAACCGTGAATAGAGACCAGTGAATTACAATGAAGTGCAGAAGAATAATAATGAGCTCCAATACTTACATATACACTAAAATATGATCATCTGGAAACTTGCATTCTCTTGGGGTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGGTATGTTCCTGAACTTCTGTTTTTCATCTGTTCCTGTTTTCGTTTTGGTACTTGATTAATTTTGCTCGTGTAACTTCAGAGTGTATTTATTCCTTTAATGTCTCCGATAAATTGAATTATTTCCTTCAAATGCGTGGTTCTCACCTGTTGTTTTTTCTTTTCCCTTCATGGGTGTGCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGGTAAGGGTTTTCTTTCAGTTGCCTTTCTGTTAATGGGTGAGCTTACATGCACTTAGAGTAAGTTCAAGAGAGAGTATCACATTTGATTGCTACTTTGAAGTTTCGATTGATTTGATATCCAGATAGGTGGGATAATACTTTTCAAATTGAGCCCCTGGAGCTTCTATTATGGTTATTATTATCATTATTATTTTAGATTTTTTTGCTTGGCTAAATCTTTAGTGCCACCACAGTGATACATGGTGGTTGTATATGGCTTTACTTTGTCTTGAGCTATTCTGGCTATTGTCAAGGACTTCTACTTTAGGATTTCGTTTATGTGCTTGTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGGATTTTTCTTCTTTCTCTAGGAGTTTGAACTTAAAATGACCATGTTTTCCAATTATCAAATGTCAGGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATGAAAACTGTTGCCTTTTATACTGTTTTATTGTGTGATGTTTGATGCATAAGAGTACCTTACATATAATATGTGGTTGTTGAACAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTCTATCACATGCTTCTCGGCCGCATCTCATTTTTATTTCTTGGTTTCTAATATTATTTCCTCTCTTCTTTGACTTGTACTTTTACAACTTTGTCATCATCTTTAACTTGCATGTGATCTTCTCGGCATCCACCAAAAAGTTATTTAATAAAACTGTTATTTTTCTTTCTGGTGATTTAAGTTATATCACTCCCTTTTTGTAATTTGCCCTAACTATAGTAACTTCCCTAGTTTTTGATCAGCTGTTTCAGTATTGTTAGCTCTTTCATACATGCATGGACCTGAGTGTACACTTGCATGCAATCCTGAAATGTTCTATTTCACTTATTTTGTATTGTTTTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATATTGTTTATGCATTTTATAATATATAACGATTGTCAAATGAAATAAAAAGGTAAAATGTATTTGAATTTGGGAAATTTGAAATTGAAAAACCAATTAGTTCTTGAAGTTCTCCCAAAAAAAAAATTAATAGATTAACTCTTAAATCTTTTCTTTCTGGAAACTTGTACAATATCCATGTTGTAAATCTGAAAAAAGATGGACATTCGATAACATCTCATAAAATACGAAATACTTTTTTTGCTAATGTTTGCATGTATTGGACTCCTGATTGTCCAGAACAACTATGCTATTAGAGACCAAGATAAATTATGCTATTATAGACCAAGATTAATTTCTCCTTTGCCCTTGGTTTCTGAAAAGTAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCAGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGGTAAACTAAACTGAATCTTTGTTACTTATGAAACTTGAATTTGCTGTTTTAGCTTCCCCATCTGATAACAGTTTTTCTTTTGCTTTTCTATGCCCTGTATAAACTATACCCCTTATCTATTTAATGTTTTCTTCGTTTAATTTTTCAACCTTTAAGAAGACGGGCCAAATTTTACAAACGAAATACAGGAATTTCATAAACTATTTCCGTTTTTCAGTTTTCTAAAATTTAGCTTTGACTTCAAAGTTGACTTGGAGTAGGTTAGAAATCAAAGGAAAAGGTTTAAATAGAAAAGAGTACAAACAAGAAAAATGTTTGTAAAAAAAAAAAAGGAAAAAAACTATAAACAAAAACGTTTACAAGTGGACTTCTTATCTCATCTTATTAAACTTATTTTTCTTTGTTTTTTCTGTTGATATAGTTGGAGGCAGGGGACGGGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACA

mRNA sequence

TTCAAAGGAACAAAATGCACAAACCAACAAAAAAAAAAAACACAATGGAGATGAACCCAACACAAATGGACCTCCCATGCACTCCAACGTGTTAGGGATGAGGCAATGTATTTTGGCGATGCGTGAAGGTCATGTGCGGCTAATTCTGGCGAGCGAAGAACTCAGATAGGGGCGGATGGTGGTAGCGCTCCTTCTGAGGTGTGCGATGTCAACAAACGGCCACTCGTACTTGGTGACCAAACTTAAACCCTAACGGAATGTAGTTGTCAAAGAATAAACAAATAGACGAATGTCCCGAACCCTAGATTACTTGGATACCATGTTGTAGTTAGAGTGAAATATTAAATAACTCCCTTACTTAATTCTATACAACATATATGGGCATTCCTGAAAACCGTGAATAGAGACCAGTGAATTACAATGAAGTGCAGAAGAATAATAATGAGCTCCAATACTTACATATACACTAAAATATGATCATCTGGAAACTTGCATTCTCTTGGGGTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCAGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGTTGGAGGCAGGGGACGGGGTTGATCAGATTGATATCGGTAACAGATGAAATGGACTAACTACA

Coding sequence (CDS)

ATGATCATCTGGAAACTTGCATTCTCTTGGGGTTTTTTTTTCTACAGGTCTTCTAGTGTCTGCTTCGTATCTTTAAAGATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAACGGTGAGACATACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCTAAAGACGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCAGGAGGATGGTCCAGGTGGCAGGTCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGTGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCATCAGAGTTGGAGGCAGGGGACGGGGTTGA

Protein sequence

MIIWKLAFSWGFFFYRSSSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDDGAKAASGGRGKGGPGGKPGAIRVGGRGRG

Homology

[Close]

BLAST of IVF0000781 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.1e-59
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGQ-EDGPGGRSAKGMGRGF 146
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 147 DDGAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           DDG     GGRG+GG GGK G I+ GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

[Close]

BLAST of IVF0000781 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.0e-58
Identity = 122/150 (81.33%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GQEDGPGGRSAKGMGRGFD 146
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R G++D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 147 DGAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           DG    + GRGKGGP  K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSGG-RGGGRGRG 146

[Close]

BLAST of IVF0000781 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.9e-56
Identity = 120/150 (80.00%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRG-FD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRG+E+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 147 DGAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
             AKA    RG+G   GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGG--RGGRGRG 148

[Close]

BLAST of IVF0000781 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-52
Identity = 114/149 (76.51%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           GA+    GRG+G   GK G  R  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of IVF0000781 vs. ExPASy Swiss-Prot
Match: Q9QXA5 (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-40
Identity = 91/140 (65.00%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRG-FD 146
           IRG+TIKYLR+PDE+ID V+EE            GRGRG  Q+    GR   G GRG F 
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFG 120

Query: 147 DGAKAASGGRGKGGPGGKPG 166
              +    G G+G P  KPG
Sbjct: 121 GRGRGGIPGAGRGQPEKKPG 131

[Close]

BLAST of IVF0000781 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 17  SSSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 76
           +SSVCF+SLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG
Sbjct: 86  ASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 145

Query: 77  DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRS 136
           DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPG R 
Sbjct: 146 DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRP 205

Query: 137 AKGMGRGFDDGAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           AKGMGRGFDDGAKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 206 AKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]

BLAST of IVF0000781 vs. ExPASy TrEMBL
Match: A0A1S3CFQ0 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103500419 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPGGRSAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           GAKAASGGRGKGGPGGKPGAIRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. ExPASy TrEMBL
Match: A0A1S3BYD6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           GAKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. ExPASy TrEMBL
Match: A0A6J1CRC5 (U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC111013478 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.3e-74
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRG+EDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           G+KA+SGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. ExPASy TrEMBL
Match: A0A0A0K9I4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPG R AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           GAKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. NCBI nr
Match: XP_038896461.1 (uncharacterized protein LOC120084721 [Benincasa hispida])

HSP 1 Score: 299 bits (766), Expect = 1.79e-99
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 17  SSSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 76
           +SSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG
Sbjct: 154 ASSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 213

Query: 77  DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRS 136
           DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRG+EDGPGGR 
Sbjct: 214 DRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRP 273

Query: 137 AKGMGRGFDDGAKAASGGRGKGGPGGKPGAIRVGGRGRG 175
           AKGMGRGFDD AKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 274 AKGMGRGFDDSAKAASGGRGKGGPGGKPGANRVGGRGRG 312

[Close]

BLAST of IVF0000781 vs. NCBI nr
Match: XP_008461936.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 288 bits (737), Expect = 1.84e-97
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE Y
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPEFY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPGGRSAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRSAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 175
           GAKAASGGRGKGGPGGKPGAIRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. NCBI nr
Match: XP_008454536.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454538.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454539.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 288 bits (736), Expect = 2.61e-97
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 175
           GAKAASGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. NCBI nr
Match: XP_011653886.2 (probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740554.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740555.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740556.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740557.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >KAE8649735.1 hypothetical protein Csa_012390 [Cucumis sativus])

HSP 1 Score: 285 bits (730), Expect = 2.14e-96
Identity = 144/149 (96.64%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRG+EDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 175
           GAKA++GGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GAKASTGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. NCBI nr
Match: XP_022143617.1 (probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia])

HSP 1 Score: 285 bits (729), Expect = 3.04e-96
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRG+EDGPGGR AKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 175
           G+KA+SGGRGKGGPGGKPGA RVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of IVF0000781 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-53
Identity = 114/149 (76.51%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 27  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 86
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 87  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 146
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 147 GAKAASGGRGKGGPGGKPGAIRVGGRGRG 176
           GA+    GRG+G   GK G  R  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of IVF0000781 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 28  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 87
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 88  RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGRGFDD 147
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 148 GAKAASGGRGKGGP 161
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]

BLAST of IVF0000781 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.5e-11
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 28  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 87
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 88  RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGQEDGPGGRSAKGMGR 147
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  +     G+ A G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 148 GFDDGAKAASGGRGKGGP 161
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]

BLAST of IVF0000781 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-08
Identity = 39/101 (38.61%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 43  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--E 102
           +ELKNG   +G +   D  MN HL+ V  T K G     +    +RGN I+Y  +PD   
Sbjct: 17  IELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 76

Query: 103 VIDKVQEET------KSRADRKPLGVGRGRGRGQEDGPGGR 136
           +   + E+T      K  A + P G GRGRGRG+  G GGR
Sbjct: 77  LETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 116

[Close]

BLAST of IVF0000781 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 39/111 (35.14%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 43  VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 102
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 103 KYLRVPD--EVIDKVQEET------KSRADRKPLGVGRGRGRGQEDGPGGR 136
           +Y  +PD   +   + E+T      K  A + P G GRGRGRG+  G GGR
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 126

The following BLAST results are available for this feature:

BLAST of IVF0000781 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LGE6	8.1e-59	82.78	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
Q43582	4.0e-58	81.33	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P...	[more]
Q9ZRU9	4.9e-56	80.00	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN...	[more]
F4K4E3	2.5e-52	76.51	Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1	[more]
Q9QXA5	2.2e-40	65.00	U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 S...	[more]

BLAST of IVF0000781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q6	1.3e-78	96.23	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A1S3CFQ0	1.1e-74	98.66	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103500419...	[more]
A0A1S3BYD6	1.4e-74	97.99	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929...	[more]
A0A6J1CRC5	9.3e-74	95.97	U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0K9I4	1.6e-73	97.32	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]

BLAST of IVF0000781 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896461.1	1.79e-99	96.23	uncharacterized protein LOC120084721 [Benincasa hispida]	[more]
XP_008461936.1	1.84e-97	98.66	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo]	[more]
XP_008454536.1	2.61e-97	97.99	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_...	[more]
XP_011653886.2	2.14e-96	96.64	probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_03174055...	[more]
XP_022143617.1	3.04e-96	95.97	probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia]	[more]

BLAST of IVF0000781 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27720.1	1.8e-53	76.51	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	3.8e-11	32.84	snRNP core protein SMD3	[more]
AT1G20580.1	8.5e-11	33.33	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	6.7e-08	38.61	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	1.4e-05	35.14	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 31..97 e-value: 1.4E-20 score: 84.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 32..96 e-value: 9.9E-17 score: 60.4
None	No IPR available	GENE3D	2.30.30.100		coord: 27..109 e-value: 2.5E-37 score: 128.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..175
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 27..163
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 27..163
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 28..103 e-value: 2.63501E-62 score: 185.087
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 29..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000781.1	IVF0000781.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0033962	P-body assembly
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006396	RNA processing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0017070	U6 snRNA binding