IVF0000716 (gene) Melon (IVF77) v1

Overview


Name	IVF0000716
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	KNR4/SMI1 homolog 2-like
Location	chr05: 8145309 .. 8146054 (+)
RNA-Seq Expression	IVF0000716
Synteny	IVF0000716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGGAGAAGGGAGAAGTTAGAACGAGAACAAGTGACCGGTTAAAAGCCTTAGGGATCACTTGTTCGAAAAAAACAATTGCCAAAAGGGATTCAAACTCTATCGAGTTTTCAGATGAGGTACTAATGTATGTTTTTAAGAATTACACAGAAGTTGTAGATGTTTATAACTTTTTCTATGTCTAGCAGAGACCAGAAGATCGTGGAGGGGTCGAAAAGCAAGCCAAACAATCCAATAACTTTAAAAAAGAGGGGGAGGATTGAACCGCCAAAAGAAGATGTCACTGTACATAATAAGCAAAGGATAAAAAGCTTGGTAAACTGTAGATTTATTTTCTAATGAGTTGTGGTCTATGTAGGTTTCAAAAAGTAGCTTATTGATGTTGTGGTCTATGTAGGTTTCAAAAAGTCGAGTTTACAGAAGGAAACTTGAAGAAAAGAAACAAAAAGAGGTTGAAGAAAATGTATGTATTTTACCCCTTGTTGTACTTCAATTATGTATTATATAAATTGATTATAACTTTGACAAACAGGAAAATATTGAAAGCAAAAGCGAAGAAGATGAACAACGAGAAAAAGATAAACAAGTAGAAGAAGATAACGATGAAGAAGGGGAAGGGGAGACAGCAATAGATGAAGATTTGAGTTCATGGATGAGTAAACAAGATGAAAGATCAACGAATAAGAAGAAGAGAAAAAAGACTACGGAAAAGGGAAAGAAGGTAAGCGTATGGTTAATTTGA

mRNA sequence

ATGAAAAAGGAGAAGGGAGAAGTTAGAACGAGAACAAGTGACCGGTTAAAAGCCTTAGGGATCACTTGTTCGAAAAAAACAATTGCCAAAAGGGATTCAAACTCTATCGAGTTTTCAGATGAGGTTTCAAAAAGTCGAGTTTACAGAAGGAAACTTGAAGAAAAGAAACAAAAAGAGGTTGAAGAAAATGAAAATATTGAAAGCAAAAGCGAAGAAGATGAACAACGAGAAAAAGATAAACAAGTAGAAGAAGATAACGATGAAGAAGGGGAAGGGGAGACAGCAATAGATGAAGATTTGAGTTCATGGATGAGTAAACAAGATGAAAGATCAACGAATAAGAAGAAGAGAAAAAAGACTACGGAAAAGGGAAAGAAGGTAAGCGTATGGTTAATTTGA

Coding sequence (CDS)

ATGAAAAAGGAGAAGGGAGAAGTTAGAACGAGAACAAGTGACCGGTTAAAAGCCTTAGGGATCACTTGTTCGAAAAAAACAATTGCCAAAAGGGATTCAAACTCTATCGAGTTTTCAGATGAGGTTTCAAAAAGTCGAGTTTACAGAAGGAAACTTGAAGAAAAGAAACAAAAAGAGGTTGAAGAAAATGAAAATATTGAAAGCAAAAGCGAAGAAGATGAACAACGAGAAAAAGATAAACAAGTAGAAGAAGATAACGATGAAGAAGGGGAAGGGGAGACAGCAATAGATGAAGATTTGAGTTCATGGATGAGTAAACAAGATGAAAGATCAACGAATAAGAAGAAGAGAAAAAAGACTACGGAAAAGGGAAAGAAGGTAAGCGTATGGTTAATTTGA

Protein sequence

MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEVEENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKTTEKGKKVSVWLI

Homology

[Close]

BLAST of IVF0000716 vs. ExPASy TrEMBL
Match: A0A1S3C6E3 (uncharacterized protein DDB_G0286299-like OS=Cucumis melo OX=3656 GN=LOC103497002 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.6e-52
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV
Sbjct: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120
           EE ENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT
Sbjct: 61  EEKENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120

Query: 121 TEKGKKVSVWLI 133
           TEKGKK  V L+
Sbjct: 121 TEKGKKFKVSLM 132

[Close]

BLAST of IVF0000716 vs. ExPASy TrEMBL
Match: A0A5A7TF74 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00140 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKK K +V+TRTSDRL+  GIT S+K++A R  N     +EVS+ RVYR K E KKQK+V
Sbjct: 1   MKKGKRDVKTRTSDRLRVAGITGSRKSLATRIQNLSSSFEEVSRRRVYRGKREGKKQKDV 60

Query: 61  EENENIESKSEEDEQREKDKQVEED----------------NDEEGEGETAIDEDLSSWM 120
           E  E+ +S+SE++E+ ++D++VEED                 DEE EGETAI ED +S  
Sbjct: 61  EGKEDTKSESEKEEKVQEDEEVEEDEQDEDKEDEEKQDEEEQDEEEEGETAIGEDSNSST 120

Query: 121 SKQDERSTNKKKRKKTTEKGKKV 128
           S   E  T+ KKRKK  EKGKKV
Sbjct: 121 S---EIPTDTKKRKKVAEKGKKV 140

[Close]

BLAST of IVF0000716 vs. ExPASy TrEMBL
Match: A0A5D3BVR2 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00650 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.6e-12
Identity = 63/127 (49.61%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKK K EVRTR SDRL+A  I  SKK +  +    +  SDEVSK RVY RK EEKKQKEV
Sbjct: 1   MKKGKREVRTRISDRLRAAEIIGSKKRLPTKIQTLLSSSDEVSKIRVYIRKFEEKKQKEV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120
           EE                            +GE ++DED SS  S+QDER T  KKRKKT
Sbjct: 61  EE----------------------------KGEASVDEDSSSSTSEQDERPTGTKKRKKT 99

Query: 121 TEKGKKV 128
            EK KKV
Sbjct: 121 VEKEKKV 99

[Close]

BLAST of IVF0000716 vs. ExPASy TrEMBL
Match: A0A5A7U540 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00850 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 63/128 (49.22%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKK K EVRTR SDRL+A  I  SKK +  +    +  SDEVSK RVY RK EEKKQKEV
Sbjct: 1   MKKGKREVRTRISDRLRAAEIIGSKKRLPTKIQTLLSSSDEVSKIRVYIRKFEEKKQKEV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120
           EE                            +GE ++DED SS  S+QDER T  KKRKKT
Sbjct: 61  EE----------------------------KGEASVDEDSSSSTSEQDERPTGTKKRKKT 100

Query: 121 TEKGKKVS 129
            EK KK S
Sbjct: 121 VEKEKKSS 100

[Close]

BLAST of IVF0000716 vs. ExPASy TrEMBL
Match: A0A1S3CI25 (KNR4/SMI1 homolog 2-like OS=Cucumis melo OX=3656 GN=LOC103501208 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 43  SKSRVYRRKLEEKKQKEVEENENI-ESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLS 102
           SK  V   K +  K  E  E+E++ E + EEDEQREKDK+VEEDN+EEG+ ETA+DED S
Sbjct: 7   SKEDVTVEKKQRIKSLENTESESVEEEQGEEDEQREKDKEVEEDNNEEGKRETAVDEDSS 66

Query: 103 SWMSKQDERSTNKKKRKKTTEKGKKV 128
           SW S+QDER  + KKRK TT+K KKV
Sbjct: 67  SWTSEQDERPMDNKKRKNTTKKRKKV 92

[Close]

BLAST of IVF0000716 vs. NCBI nr
Match: XP_008457273.1 (PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis melo])

HSP 1 Score: 212 bits (540), Expect = 5.84e-68
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV
Sbjct: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120
           EE ENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT
Sbjct: 61  EEKENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120

Query: 121 TEKGKKVSVWLI 132
           TEKGKK  V L+
Sbjct: 121 TEKGKKFKVSLM 132

[Close]

BLAST of IVF0000716 vs. NCBI nr
Match: TYK03567.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 5.48e-16
Identity = 63/127 (49.61%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKK K EVRTR SDRL+A  I  SKK +  +    +  SDEVSK RVY RK EEKKQKEV
Sbjct: 1   MKKGKREVRTRISDRLRAAEIIGSKKRLPTKIQTLLSSSDEVSKIRVYIRKFEEKKQKEV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120
           EE                             GE ++DED SS  S+QDER T  KKRKKT
Sbjct: 61  EEK----------------------------GEASVDEDSSSSTSEQDERPTGTKKRKKT 99

Query: 121 TEKGKKV 127
            EK KKV
Sbjct: 121 VEKEKKV 99

[Close]

BLAST of IVF0000716 vs. NCBI nr
Match: KAA0041558.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.07e-15
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKK K +V+TRTSDRL+  GIT S+K++A R  N     +EVS+ RVYR K E KKQK+V
Sbjct: 1   MKKGKRDVKTRTSDRLRVAGITGSRKSLATRIQNLSSSFEEVSRRRVYRGKREGKKQKDV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDN----------------DEEGEGETAIDEDLSSWM 120
           E  E+ +S+SE++E+ ++D++VEED                 DEE EGETAI ED +S  
Sbjct: 61  EGKEDTKSESEKEEKVQEDEEVEEDEQDEDKEDEEKQDEEEQDEEEEGETAIGEDSNSST 120

Query: 121 SKQDERSTNKKKRKKTTEKGKKV 127
           S   E  T+ KKRKK  EKGKKV
Sbjct: 121 S---EIPTDTKKRKKVAEKGKKV 140

[Close]

BLAST of IVF0000716 vs. NCBI nr
Match: KAA0050354.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.37e-15
Identity = 63/128 (49.22%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 1   MKKEKGEVRTRTSDRLKALGITCSKKTIAKRDSNSIEFSDEVSKSRVYRRKLEEKKQKEV 60
           MKK K EVRTR SDRL+A  I  SKK +  +    +  SDEVSK RVY RK EEKKQKEV
Sbjct: 1   MKKGKREVRTRISDRLRAAEIIGSKKRLPTKIQTLLSSSDEVSKIRVYIRKFEEKKQKEV 60

Query: 61  EENENIESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKT 120
           EE                             GE ++DED SS  S+QDER T  KKRKKT
Sbjct: 61  EEK----------------------------GEASVDEDSSSSTSEQDERPTGTKKRKKT 100

Query: 121 TEKGKKVS 128
            EK KK S
Sbjct: 121 VEKEKKSS 100

[Close]

BLAST of IVF0000716 vs. NCBI nr
Match: XP_008462944.1 (PREDICTED: KNR4/SMI1 homolog 2-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 7.40e-12
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 67  ESKSEEDEQREKDKQVEEDNDEEGEGETAIDEDLSSWMSKQDERSTNKKKRKKTTEKGKK 126
           E + EEDEQREKDK+VEEDN+EEG+ ETA+DED SSW S+QDER  + KKRK TT+K KK
Sbjct: 32  EEQGEEDEQREKDKEVEEDNNEEGKRETAVDEDSSSWTSEQDERPMDNKKRKNTTKKRKK 91

The following BLAST results are available for this feature:

BLAST of IVF0000716 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6E3	2.6e-52	96.21	uncharacterized protein DDB_G0286299-like OS=Cucumis melo OX=3656 GN=LOC10349700...	[more]
A0A5A7TF74	5.3e-13	49.65	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001...	[more]
A0A5D3BVR2	7.6e-12	49.61	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00...	[more]
A0A5A7U540	1.3e-11	49.22	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3CI25	1.1e-07	59.30	KNR4/SMI1 homolog 2-like OS=Cucumis melo OX=3656 GN=LOC103501208 PE=4 SV=1	[more]

BLAST of IVF0000716 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457273.1	5.84e-68	96.21	PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis melo]	[more]
TYK03567.1	5.48e-16	49.61	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0041558.1	3.07e-15	49.65	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0050354.1	4.37e-15	49.22	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
XP_008462944.1	7.40e-12	70.49	PREDICTED: KNR4/SMI1 homolog 2-like [Cucumis melo]	[more]

BLAST of IVF0000716 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000716.2	IVF0000716.2	mRNA