IVF0000638 (gene) Melon (IVF77) v1

Overview


Name	IVF0000638
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	replication protein A 14 kDa subunit B
Location	chr04: 29798355 .. 29801443 (+)
RNA-Seq Expression	IVF0000638
Synteny	IVF0000638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTTCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGGTATTGTAGTTCCTCAGTGCTCTTTTGATTCTTTGTTCGAGTGTTTTGCAATTATTCTCCCCCTTGTTTGGTTCAGTTTGTTAGATCGAAGTGCACGATGAAATTCTTTTTGACTCTTTTCTTGTATCGTCTTGTCAGGAATATGGATATGTTTGTTTGGCGTCAAATTAAGTCTAGTTGTTTTCTAGTTTGGTCGCATTTTCTTCCTGATTATGGTCTGGGTTCCTCATTTTGACATTTAAAGAAAGTAGAGAATTTAGACGCTGGAAGACAGTTGTGAGTGGAGAATTTTAACATTAGTGAAGCTAAAATAAGAGCTAACCCACAGTGATCATCATTCATACTCGTATTGTTATAATTAATTTTTCTTTCAAATGCAAAGAGCTTAGAGAGAATGGAACCACCTACTTAGGATTTAAATTTTAACAAGTTATCTTGACAATCAAATGCGTTAAAATCACATGTTTCTTTTGTTAGAACAGTTGAGTGCAACAAAGTGGGATGAACACTCTGTGAAAATTTCTCTGACTGATATCTTATAGACATTTTTTAAACATAGCAATTGGTTTTGAGTACAAATGTCAAAAGTAACTGTTTGGATCTCCACCACATTAGATTTTTGTAACGAGGAAGAAAATTACTTGTGAAATGCTGTCTGCTAGTTGCATAAATGCCACCATGAATTTTTTTTATTGATTTGGTGTTTAACCCAACAAATTTCAAGCATTGCTAACATGGTGGAACAAGTTTGTTTTGTTCTCACTAGATGTTCCTCTCTGAAATATTTTCTTCTTGTTCTTGCTGTTTACTATAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGGTATGCTCTCTTCTTCAATCATGCTTACGCTAAAATGACATTTGGTATTCTTACGCAAAAATGACGGTAGAAATAGTTGGCTTGGGTCATGCTGAAAGCCCAAGGAATTTATTTTCCCCTAATTTTATTCTTTTGATGAGGCTATTTTCCCCTAATTTTATTCTTTTAATGAGGCTTGTGGTGTCTATAAATACTTCCCCTTTGTACCTTTATAATTTCAGAAATAATAAGAAACATCTATACCATGGTTTTTCTCCCTGTACTAGGGTTTTCACATAGACCTCGTATTCTTTCTTTCTCTTTACTTTCAATAATGACACTTTGAAGCTCAGAAACTGTATAGTGCCAATATTTATGTTTGAATTAGCTGAAGAGGATCACTAATTGTGTTTTCAGCTGTATCAATGTTCTTGGCGAAAGCAATGTTGAGTTTTAAATAGATATTTTCTCAAAAAGCCTAGCTAAATCTGGCATGTGCAATTCTGAAGCGTAACTTGGCTAGATCATCAGTTTGGAACCGGGATCAAACTAGTTGAAACTAGTATTTGACATTCATTTTGTATCTAGTTGAAACTAGCATTTGACATTCATTTTGTATCTAGTTGAAACTAAATCCATTCTCTTTTTAAAACCTTCTGCTTACCTTGTATGAATGTGAAATTACCGAACTGGAACATTGTGCACTTGAGTTGGATCTATCACACTTCTCTTGGTCCTTAGGTTTTAGGTCTTCCCACTCTCCTGGCGCTCTCTATTTTCTCTTGCTCTTGTACTCACTCCTTTTTTTATAATTAAAAGGGAGTGAATATAACAAGACTGCGAGAGTCAACATTAGGAATTGAAATTGAGGATGTATAGTTCCAAGAGCGAGAGTTGCCCAATACAAAAGCACAATAAGGTCATTTCAACAATTTTCTGACGACGATGCAAACAAAATGTCAAAAAACTTTTTATAAAGTGGAGCTGTTTCTAGTATTGACCCAAAATTTGGTTCAACCATACAATTATCAGCAGTCACCAAGTTCTATAAATGTAGAAATAAGAGAAAAAAACTATACCAAATGATGAACTTGGCGAGTGAAAAACCAGTTATATGTGGGTGTGAGTGCGTTTCATTTTGTGAGCCCTTGGGATAATTCTGTTAGTTGGGAAAGGGGCGTTGAATAGGCTGAGGTAGGGAGTCTTTCGTTATCTTTTGGCATATTTTTTTTGTAGATCTTTTCAGCATAAAGGAGAAGGGGGAGATTTCGAACTCCCTCCATATTTGCCAAAACAGGGAATCTATAATTCATATCTCTCAAATCCATCTTACTTAGCTCATTAAGACTTAAGAATTTGTTACCCCACGATGTTTTATATAATCTTCTCCTTGGATGAGGAGCCTGAAGATGAGATATGCCAATAATTCAAGCACGAGTTACTTATAGAATAATCACTCTTGGATTATTCTTTCAACATTCTATGAGATTAGATTAGTTATTGAACTTTTACCAACTATTATGAGAACAACTAGCATTCTGAATTCTTTGTTTAACGCTGTTTGCAGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCCAATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATGCAAATAAACTGAAAACCGATGATTACAAACTGAC

mRNA sequence

TATCTTCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCCAATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATGCAAATAAACTGAAAACCGATGATTACAAACTGAC

Coding sequence (CDS)

ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGA

Protein sequence

MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI

Homology

[Close]

BLAST of IVF0000638 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.9e-36
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGEF+HLFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of IVF0000638 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-33
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of IVF0000638 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-28
Identity = 55/106 (51.89%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTS P+ FVN E+L+++VGRRVR V+Q   E  G+++G+STD +Q+T+KG+   P+S +
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           VE+IGIA+ +++IRA+V T+FG++FD + FN LC+ ANG+ K LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]

BLAST of IVF0000638 vs. ExPASy TrEMBL
Match: A0A1S3B7E2 (replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]

BLAST of IVF0000638 vs. ExPASy TrEMBL
Match: A0A0A0LGP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.2e-49
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKF
Sbjct: 40  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 99

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGEFK LFI
Sbjct: 100 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 145

[Close]

BLAST of IVF0000638 vs. ExPASy TrEMBL
Match: A0A6J1J6J3 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111481797 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of IVF0000638 vs. ExPASy TrEMBL
Match: A0A6J1L034 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111498639 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]

BLAST of IVF0000638 vs. ExPASy TrEMBL
Match: A0A6J1FQS1 (replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111447925 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]

BLAST of IVF0000638 vs. NCBI nr
Match: XP_008442847.1 (PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo])

HSP 1 Score: 214 bits (545), Expect = 5.05e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]

BLAST of IVF0000638 vs. NCBI nr
Match: XP_038905423.1 (replication protein A 14 kDa subunit B [Benincasa hispida])

HSP 1 Score: 210 bits (535), Expect = 1.69e-68
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVI GKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVIFGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKHLFI 106

[Close]

BLAST of IVF0000638 vs. NCBI nr
Match: XP_004149201.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >KAE8651091.1 hypothetical protein Csa_001329 [Cucumis sativus])

HSP 1 Score: 203 bits (517), Expect = 9.44e-66
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 106

[Close]

BLAST of IVF0000638 vs. NCBI nr
Match: XP_022983164.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 199 bits (507), Expect = 3.17e-64
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of IVF0000638 vs. NCBI nr
Match: XP_023528146.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200 bits (509), Expect = 8.75e-64
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 54  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 113

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 114 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 159

[Close]

BLAST of IVF0000638 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 151.4 bits (381), Expect = 4.2e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60
           MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGEF+HLFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of IVF0000638 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-34
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of IVF0000638 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-34
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:

BLAST of IVF0000638 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLG7	5.9e-36	65.09	Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ...	[more]
Q9LXK1	4.6e-33	61.68	Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ...	[more]
Q9SDK9	2.0e-28	51.89	Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of IVF0000638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7E2	1.2e-52	100.00	replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 P...	[more]
A0A0A0LGP0	2.2e-49	95.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=3 SV=1	[more]
A0A6J1J6J3	3.1e-48	93.40	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1L034	6.9e-48	93.40	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FQS1	6.9e-48	93.40	replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of IVF0000638 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442847.1	5.05e-70	100.00	PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo]	[more]
XP_038905423.1	1.69e-68	98.11	replication protein A 14 kDa subunit B [Benincasa hispida]	[more]
XP_004149201.1	9.44e-66	95.28	replication protein A 14 kDa subunit B [Cucumis sativus] >KAE8651091.1 hypotheti...	[more]
XP_022983164.1	3.17e-64	93.40	replication protein A 14 kDa subunit B-like [Cucurbita maxima]	[more]
XP_023528146.1	8.75e-64	94.34	replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0000638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18590.1	4.2e-37	65.09	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.1	3.3e-34	61.68	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.2	3.3e-34	61.68	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..106 e-value: 2.8E-21 score: 77.6
None	No IPR available	PANTHER	PTHR47058	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 1..106
None	No IPR available	PANTHER	PTHR47058:SF3	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 1..106
None	No IPR available	CDD	cd04479	RPA3	coord: 6..98 e-value: 3.56906E-24 score: 86.1629
IPR013970	Replication factor A protein 3	PFAM	PF08661	Rep_fac-A_3	coord: 1..102 e-value: 3.5E-21 score: 75.5
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000638.2	IVF0000638.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0031981	nuclear lumen
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding