IVF0000622 (gene) Melon (IVF77) v1

Overview


Name	IVF0000622
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cell wall protein RBR3-like
Location	chr04: 9976128 .. 9976412 (+)
RNA-Seq Expression	IVF0000622
Synteny	IVF0000622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGAAGATATTCCATCCCCTATTCATACTACTAACAATTCTGGTGTACCTGTAGAAGACAATGCTGATACCTTAGCTGCTAATCACATTGAAGTTCCTTACGCTGATTCAGCTTTCACCTCATCTGCATCTCCTACTGATAAATCTACTCCAACTAAGCAGCAACAACACCCTCCATCAAGTGATACTAGTGGTGCTGGTGCTTTATCAATTCCCAAAATGCCTCGTTGTTCGCTTACCAAAGATCAAAAGGTGGTTACCACAAAGGCGAGTCGCTAA

mRNA sequence

ATGTCTACTGAAGATATTCCATCCCCTATTCATACTACTAACAATTCTGGTGTACCTGTAGAAGACAATGCTGATACCTTAGCTGCTAATCACATTGAAGTTCCTTACGCTGATTCAGCTTTCACCTCATCTGCATCTCCTACTGATAAATCTACTCCAACTAAGCAGCAACAACACCCTCCATCAAGTGATACTAGTGGTGCTGGTGCTTTATCAATTCCCAAAATGCCTCGTTGTTCGCTTACCAAAGATCAAAAGGTGGTTACCACAAAGGCGAGTCGCTAA

Coding sequence (CDS)

ATGTCTACTGAAGATATTCCATCCCCTATTCATACTACTAACAATTCTGGTGTACCTGTAGAAGACAATGCTGATACCTTAGCTGCTAATCACATTGAAGTTCCTTACGCTGATTCAGCTTTCACCTCATCTGCATCTCCTACTGATAAATCTACTCCAACTAAGCAGCAACAACACCCTCCATCAAGTGATACTAGTGGTGCTGGTGCTTTATCAATTCCCAAAATGCCTCGTTGTTCGCTTACCAAAGATCAAAAGGTGGTTACCACAAAGGCGAGTCGCTAA

Protein sequence

MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHPPSSDTSGAGALSIPKMPRCSLTKDQKVVTTKASR

Homology

[Close]

BLAST of IVF0000622 vs. ExPASy TrEMBL
Match: A0A5A7TUG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00710 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.9e-39
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60
          MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP
Sbjct: 1  MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60

Query: 61 PSSDTSGAGALSIPKMPRCSLTKDQKV 88
          PSSDTSGAGALSIPKMPRCSLTKDQK+
Sbjct: 61 PSSDTSGAGALSIPKMPRCSLTKDQKL 87

[Close]

BLAST of IVF0000622 vs. ExPASy TrEMBL
Match: A0A5D3BF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00220 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60
          MSTEDIPSPIHTT+NSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP
Sbjct: 1  MSTEDIPSPIHTTDNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60

Query: 61 PSSDTSGAGALSIPKMPRCSLTKDQKV 88
          PSSDTSGAGALSIPKMPRCSLTKDQK+
Sbjct: 61 PSSDTSGAGALSIPKMPRCSLTKDQKL 87

[Close]

BLAST of IVF0000622 vs. ExPASy TrEMBL
Match: A0A5D3E1T9 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00210 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 42/87 (48.28%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 1   MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60
           MS  DIPSPI  T N GV V DN DT      +VP  DSAF+ S S  D   PT  +  P
Sbjct: 81  MSMGDIPSPIRATGNPGVTVRDNIDTSTNPRTKVPPPDSAFSPSVSLADTPAPTLSR--P 140

Query: 61  PSSDTSGAGALSIPKMPRCSLTKDQKV 88
           PSSD SG+  L   +MP   LTK+  V
Sbjct: 141 PSSDASGSFVL---RMPHRQLTKEDNV 162

[Close]

BLAST of IVF0000622 vs. NCBI nr
Match: KAA0046488.1 (uncharacterized protein E6C27_scaffold543G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (427), Expect = 5.01e-51
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60
          MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP
Sbjct: 1  MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60

Query: 61 PSSDTSGAGALSIPKMPRCSLTKDQKV 87
          PSSDTSGAGALSIPKMPRCSLTKDQK+
Sbjct: 61 PSSDTSGAGALSIPKMPRCSLTKDQKL 87

[Close]

BLAST of IVF0000622 vs. NCBI nr
Match: TYJ97724.1 (uncharacterized protein E5676_scaffold1251G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 2.88e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60
          MSTEDIPSPIHTT+NSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP
Sbjct: 1  MSTEDIPSPIHTTDNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60

Query: 61 PSSDTSGAGALSIPKMPRCSLTKDQKV 87
          PSSDTSGAGALSIPKMPRCSLTKDQK+
Sbjct: 61 PSSDTSGAGALSIPKMPRCSLTKDQKL 87

[Close]

BLAST of IVF0000622 vs. NCBI nr
Match: KAA0047180.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK29748.1 cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.90e-08
Identity = 42/87 (48.28%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 1   MSTEDIPSPIHTTNNSGVPVEDNADTLAANHIEVPYADSAFTSSASPTDKSTPTKQQQHP 60
           MS  DIPSPI  T N GV V DN DT      +VP  DSAF+ S S  D   PT  +  P
Sbjct: 81  MSMGDIPSPIRATGNPGVTVRDNIDTSTNPRTKVPPPDSAFSPSVSLADTPAPTLSR--P 140

Query: 61  PSSDTSGAGALSIPKMPRCSLTKDQKV 87
           PSSD SG+  L   +MP   LTK+  V
Sbjct: 141 PSSDASGSFVL---RMPHRQLTKEDNV 162

The following BLAST results are available for this feature:

BLAST of IVF0000622 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0000622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUG5	8.9e-39	98.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BF79	3.4e-38	97.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E1T9	3.4e-06	48.28	Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of IVF0000622 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046488.1	5.01e-51	98.85	uncharacterized protein E6C27_scaffold543G00710 [Cucumis melo var. makuwa]	[more]
TYJ97724.1	2.88e-50	97.70	uncharacterized protein E5676_scaffold1251G00220 [Cucumis melo var. makuwa]	[more]
KAA0047180.1	1.90e-08	48.28	cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK29748.1 cell wall pro...	[more]

BLAST of IVF0000622 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0000622.1	IVF0000622.1	mRNA