IVF0000534 (gene) Melon (IVF77) v1

Overview
NameIVF0000534
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 27294548 .. 27294890 (-)
RNA-Seq ExpressionIVF0000534
SyntenyIVF0000534
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACTCAGAAGCTTCTTACTTTGTCCATTGCGGTCATGGTCCTATTTGCTTCTTTTGTCTCATCGCGTATTATTCTATATCTCAACTATTATAATTTCAGAACGTTTTTTTTTATTTTGTTATTTCGAAAGTTAAAGAGGTACTATTTATATGCTAATTCTTGATCATATGGCAGGGGAGGGAGATGATCTTTGGAATTGTGTTATACCATGTTCTAACAACATCGGAGATCTTTTGTGTAATACTGCATGCATCGAACAAGACCAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATCTCTGATATAAAAGTTTGTTGTTGCAATAATGGATGA

mRNA sequence

ATGGGAACTCAGAAGCTTCTTACTTTGTCCATTGCGGTCATGGTCCTATTTGCTTCTTTTGTCTCATCGCGGGAGGGAGATGATCTTTGGAATTGTGTTATACCATGTTCTAACAACATCGGAGATCTTTTGTGTAATACTGCATGCATCGAACAAGACCAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATCTCTGATATAAAAGTTTGTTGTTGCAATAATGGATGA

Coding sequence (CDS)

ATGGGAACTCAGAAGCTTCTTACTTTGTCCATTGCGGTCATGGTCCTATTTGCTTCTTTTGTCTCATCGCGGGAGGGAGATGATCTTTGGAATTGTGTTATACCATGTTCTAACAACATCGGAGATCTTTTGTGTAATACTGCATGCATCGAACAAGACCAAGGCGCTGGATTTTGTGTTCCCAAGTTACCTGGCATCTCTGATATAAAAGTTTGTTGTTGCAATAATGGATGA

Protein sequence

MGTQKLLTLSIAVMVLFASFVSSREGDDLWNCVIPCSNNIGDLLCNTACIEQDQGAGFCVPKLPGISDIKVCCCNNG
Homology
BLAST of IVF0000534 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDLWNCVIPCSNNIGDLLCNTACIEQDQGAGFCV 60
          M TQKL  +S+ V V F+ F SS EGDDLWNCVIPCSNN GD+LCNTACIEQD+GAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDIKVCCCNNG 78
          PKLPGISD+KVCCCNNG
Sbjct: 61 PKLPGISDMKVCCCNNG 77

BLAST of IVF0000534 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.4e-11
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDL-WNCVIPCSNNIGDLLCNTACIEQDQGAGFC 60
          M TQKL T+SI V+++FA   S+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDIKVCCCN 76
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of IVF0000534 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDLWNCVIPCSNNIGDLLCNTACIEQDQGAGFCV 60
          M T+KLL + +A+ VL A FV+  EG  LWNC+ PCS     L C   C   ++G G C+
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLPGISDIKVCCC 75
          PK P +SD  VCCC
Sbjct: 61 PKRP-VSDEYVCCC 73

BLAST of IVF0000534 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDL-WNCVIPCSNNIGDLLCNTACIEQDQGAGFC 60
          M TQKL T+SI V+V+F   VS+ +GD L  +CV PC +   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDIKVCCCNN 77
           PKLP  S  K CCCN+
Sbjct: 61 YPKLP--STDKDCCCND 75

BLAST of IVF0000534 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0

Query: 31 NCVIPCSNNIGDLLCNTACIEQDQGAGFCVPKLPGISDIKVCCCN 76
          +CV PCS+   D  C   CI ++ GAGFC PKLP  S  K CCCN
Sbjct: 11 HCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLP--STDKDCCCN 53

BLAST of IVF0000534 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 137 bits (345), Expect = 2.11e-40
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDLWNCVIPCSNNIGDLLCNTACIEQDQGAGFCV 60
          M TQKL  +S+ V V F+ F SS EGDDLWNCVIPCSNN GD+LCNTACIEQD+GAGFCV
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCV 60

Query: 61 PKLPGISDIKVCCCNNG 77
          PKLPGISD+KVCCCNNG
Sbjct: 61 PKLPGISDMKVCCCNNG 77

BLAST of IVF0000534 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.84e-16
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDL-WNCVIPCSNNIGDLLCNTACIEQDQGAGFC 60
          M TQKL T+SI V+++FA   S+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 VPKLPGISDIKVCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of IVF0000534 vs. NCBI nr
Match: KAA0043464.1 (hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 1.38e-15
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDLWNCVIPCSNNIGDLLCNTACIEQDQGAGFCV 60
          M T+KLL + +A+ VL A FV+  EG  LWNC+ PCS     L C   C   ++G G C+
Sbjct: 1  MPTRKLLVVFVAITVLLACFVTLSEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACI 60

Query: 61 PKLPGISDIKVCCCNN 76
          PK P +SD  VCCC  
Sbjct: 61 PKRP-VSDEYVCCCTG 75

BLAST of IVF0000534 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.96e-15
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDL-WNCVIPCSNNIGDLLCNTACIEQDQGAGFC 60
          M TQKL T+SI ++++ A  VS+ +GD L  NCV PCS+   D  C   CI ++ GAGFC
Sbjct: 1  MATQKLATVSIVMLMILACIVSTTKGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFC 60

Query: 61 VPKLPGISDIKVCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 YPKLP--STDKDCCCN 74

BLAST of IVF0000534 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 7.96e-15
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MGTQKLLTLSIAVMVLFASFVSSREGDDLWNCVIPCSNNIGDLLCNTACIEQDQGAGFCV 60
          M ++KL T+   VM++F  F SS +GD    C+ PC +   D  C   C+  ++GAGFC 
Sbjct: 1  MASRKLFTVFAIVMMMFY-FASSAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCY 60

Query: 61 PKLPGISDIKVCCCNN 76
          PKLP +++ K CCCNN
Sbjct: 61 PKLPSVTNEKDCCCNN 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1R81.4e-2979.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A0A0LHG96.4e-1151.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A5A7TJH11.4e-1047.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LJG51.9e-1050.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF55.8e-0453.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN54497.12.11e-4079.22hypothetical protein Csa_012842 [Cucumis sativus][more]
KGN61228.16.84e-1651.32hypothetical protein Csa_006463 [Cucumis sativus][more]
KAA0043464.11.38e-1546.05hypothetical protein E6C27_scaffold1167G00010 [Cucumis melo var. makuwa][more]
KAE8651697.11.96e-1551.32hypothetical protein Csa_006343 [Cucumis sativus][more]
KAG6586428.17.96e-1543.42hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0000534.1IVF0000534.1mRNA